mRNA_M-pyrifera_M_contig12882.5772.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE) HSP 1 Score: 252 bits (643), Expect = 2.650e-76 Identity = 122/165 (73.94%), Postives = 142/165 (86.06%), Query Frame = 1
Query: 19 ELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLALPQ 513
E +DHVCIDMNQ+LHVA+RKARDE+HA+RRIF RC PR+SVVFAFDGSAPLAKL+VQRSRREN KRN++Y MS+LHLSPGT+FM+ ASAMEYYAFQE +PCY+GV FY+SGA+VPGEGELKCIDW+KHM +ESAVIVGGDADL+LQGLAL +
Sbjct: 44 ESFDHVCIDMNQILHVAMRKARDEDHAIRRIFRDVNLTLKRCPPRKSVVFAFDGSAPLAKLLVQRSRRENSKRNSKYRMSALHLSPGTKFMDDVASAMEYYAFQECTRPCYQGVKFYISGANVPGEGELKCIDWLKHMPKP--DESAVIVGGDADLILQGLALSE 206
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A7S0E673_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E673_9CRYP) HSP 1 Score: 152 bits (384), Expect = 8.350e-44 Identity = 75/164 (45.73%), Postives = 105/164 (64.02%), Query Frame = 1
Query: 19 ELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYA-FQESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLAL 507
E ++HV DMN +LH A R+A+D HA+ +++ P +SVV AFDG PLAKL+ QR RR ++++Y +S LH++PGT+FM A EYYA + +R V FY+SG+ V GEGE+K IDWI ++ ++ +IVGGDADLVLQGLA+
Sbjct: 2 EEFEHVLFDMNGLLHTACRRAKDFEHAILKVYKELDATLRTLIPTKSVVLAFDGPGPLAKLLTQRKRRSKSSKSSKYKLSGLHITPGTKFMHAMKQACEYYAALRLVASAKFRNVAFYISGSDVAGEGEIKIIDWIHNLLHSQNDDRLIIVGGDADLVLQGLAV 165
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: L1JQ07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ07_GUITC) HSP 1 Score: 145 bits (367), Expect = 1.840e-40 Identity = 73/155 (47.10%), Postives = 100/155 (64.52%), Query Frame = 1
Query: 46 MNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYA-FQESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLAL 507
MN +LH A RKA+D HA+ R++ P +SVV AFDG PLAKL+ QR RR + ++Y +S LH++PGT+FM+ A EYYA + ++ V FY+SGA V GEGE+K I+WI ++ + +E +IVGGDADLVLQGLA+
Sbjct: 1 MNGLLHTACRKAKDFEHAILRVYKELDATLRTLIPTKSVVLAFDGPGPLAKLLTQRKRRNKSSKASKYKLSGLHITPGTKFMQTMREACEYYAALRLVASAKFKNVAFYISGADVAGEGEIKIIEWIHNLLQNQNDEKIIIVGGDADLVLQGLAV 155
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: I2CR78_NANGC (5'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR78_NANGC) HSP 1 Score: 139 bits (350), Expect = 7.020e-36 Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 1
Query: 10 KQQELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQ--ESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMC---SDGT--------------------EESAVIVGGDADLVLQGLALP 510
+Q +DHV ID+NQ+ H+A RKARDE+HA+RR+ ++SVV AFDG APLAK+I QR RR +++A+ ++SLHLSPGT FM +AA A+ + ES R + +YVS + PGEGE+K +DWI DG ES V+VGGDADLVLQGLALP
Sbjct: 87 EQYAEFDHVLIDVNQLTHMAARKARDEDHAIRRLLKELGRTLRVLRAQKSVVIAFDGPAPLAKIITQRKRRA-AEKDAKTPLNSLHLSPGTSFMRRAAEAVIDFCHTRLESDLTPRRRIRYYVSCSESPGEGEVKLMDWINTYLLTHEDGRXXXXXXXXXXXXXKKAGRKDSESIVVVGGDADLVLQGLALP 277
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A8J6C9K3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9K3_DIALT) HSP 1 Score: 137 bits (344), Expect = 3.260e-34 Identity = 80/170 (47.06%), Postives = 102/170 (60.00%), Query Frame = 1
Query: 25 YDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQESQKPC-YRGVTFYVSGASVPGEGELKCIDWIKHM---CSDGTEE--SAVIVGGDADLVLQGL-ALPQ 513
Y+HV +DMNQVLH A+RKA D HA +F RC P QSVV AFDG AP AKL+ QR RR +R +SS+ ++PG+EFM A YYA + Q YR VTF++SG+ V GEGE+K IDW+ DG + S ++G D DLVLQ + ALP+
Sbjct: 61 YEHVLVDMNQVLHHAVRKANDIEHAKVLVFMELNLQLQRCVPTQSVVLAFDGPAPRAKLLTQRRRRAK-RRTLSGKLSSMIITPGSEFMRDMHEACAYYACRRLQNDAPYRNVTFWLSGSQVAGEGEVKIIDWLNTQLPPAPDGKPDTRSVCVIGSDVDLVLQCISALPR 229
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A7S1TFG2_9RHOD (Hypothetical protein n=4 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFG2_9RHOD) HSP 1 Score: 130 bits (326), Expect = 6.440e-32 Identity = 71/174 (40.80%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 28 DHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHL-----SPGTEFMEKAASAMEYYAFQESQKPC-YRGVTFYVSGASVPGEGELKCIDWIKHMCSD---GTE------ESAVIVGGDADLVLQGLA 504
DHVC D+NQV+H+ALRK+ +E + R+F +C P++SV FAFDG P+AKL+ QR RR N + + +++ H+ +PGTE M A++Y+A + Y V +SG VPGEGE+K DW+ + GT+ ES +++GGDAD+VLQGLA
Sbjct: 23 DHVCFDLNQVIHMALRKSPNEEKLVIRLFRNIDAALKQCIPKRSVYFAFDGPGPMAKLLTQRVRRSNPANSQRKVLANRHIDPNAITPGTELMYMLQDALDYFACSRLEGDMKYDKVDMRISGPDVPGEGEVKIFDWLNSFVARREAGTQVSSIVTESVIVIGGDADIVLQGLA 196
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: M1US37_CYAM1 (XRN_N domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US37_CYAM1) HSP 1 Score: 127 bits (320), Expect = 4.690e-31 Identity = 74/172 (43.02%), Postives = 102/172 (59.30%), Query Frame = 1
Query: 19 ELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRR--------ENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQ--ESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLA 504
E +DHV D+NQ++H+A R AR+ + R+F C P++SV AFDG APLAKL+ Q+ RR KR + + L LSPGTE M+ A+E+Y +S++ Y+ V F VSG +VPGEGE+K ID+I H D + S V++G DADLV+ GLA
Sbjct: 28 EHFDHVLFDLNQLIHLAARVARNRDQFFIRLFRWLDNILRLCVPKKSVFIAFDGPAPLAKLVTQKRRRVLESRKLHRTRKRKRRCGVDVLSLSPGTELMQLTLQAVEFYVCSRLQSKRHLYQNVRFVVSGPTVPGEGEIKIIDYI-HRYVD-PQHSVVVIGSDADLVVLGLA 197
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A7J7IHE6_9RHOD (XRN_N domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHE6_9RHOD) HSP 1 Score: 127 bits (319), Expect = 6.430e-31 Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 1
Query: 19 ELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRR--------ENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQ--ESQKPCYRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLA 504
E +DHV D+NQ++H+A R A++ + R++ C P++SV AFDG APLAKL+ Q+ RR ++ + + L LSPGTE M+ A+E+Y +S++ YR + F VSG +VPGEGE+K ID+I H C + S +++G DADLVL GLA
Sbjct: 28 ESFDHVLFDLNQLIHLAARVAKNRDQFFIRLYRWLDKVLRLCVPKESVFIAFDGPAPLAKLVTQKRRRVLEARKLTRKLEPKKRCGVDVLSLSPGTELMQMTLQAIEFYVCSRLQSKRNLYRNLRFVVSGPTVPGEGEIKIIDYI-HRCVE-PHHSVIVIGSDADLVLLGLA 197
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR) HSP 1 Score: 127 bits (319), Expect = 6.490e-31 Identity = 76/182 (41.76%), Postives = 99/182 (54.40%), Query Frame = 1
Query: 19 ELYDHVCIDMNQVLHVALRKARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQY-------------------SMSSLHLSPGTEFMEKAASAMEYYAFQESQKPC-YRGVTFYVSGASVPGEGELKCIDWIKHMCSDGTEESAVIVGGDADLVLQGLA 504
E YDHV D+NQ+LH A+RKA + IF C PR+SV FAFDG APLAKL QR RR + ++Y ++ L ++PG E + ++EY+A+ Q YR V +SGA VPGEGELK ID+ + T+ S V+VGGDAD+VLQGLA
Sbjct: 28 EYYDHVAFDINQILHQAVRKATNRQTLAAAIFRELDQILKNCIPRKSVFFAFDGPAPLAKLATQRRRRRQRRGASEYVSDYIDENGVSRKAKTVQPAIDGLEMTPGVETLYFVRDSVEYWAYSRLQNDRKYRNVEIRISGADVPGEGELKLIDFCRTAQIPSTD-SVVVVGGDADIVLQGLA 208
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Match: A0A482S5Y4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Y4_9ARCH) HSP 1 Score: 120 bits (301), Expect = 2.220e-29 Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 25 YDHVCIDMNQVLHVALRK---ARDENHAMRRIFXXXXXXXXRCAPRQSVVFAFDGSAPLAKLIVQRSRRENIKRNAQYSMSSLHLSPGTEFMEKAASAMEYYAFQESQKPCYRGVTFYVSGASVPGEGELKCIDWI-KHMCSDGTEESAVIVGGDADLVLQGLAL 507
YDH+C+DMNQ+LH A+RK + E R +F P +SVVFAFDG AP AK +QRSRR S LSPGTEFM + Y Q ++P + +T+Y+S A PGEGE+K I WI +++ + +S + D+D+V+Q + +
Sbjct: 13 YDHICLDMNQILHYAIRKLGKSNSEKKMYRFMFRLLDEVFLLARPVKSVVFAFDGPAPFAKFNLQRSRRTR-------DTVSNQLSPGTEFMTSMEEVVSVYLLQRLRRPAFANLTYYISDAETPGEGEIKIIQWINRYLSMVNSNDSIALYSADSDMVVQAMCI 170 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12882.5772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12882.5772.1 >prot_M-pyrifera_M_contig12882.5772.1 ID=prot_M-pyrifera_M_contig12882.5772.1|Name=mRNA_M-pyrifera_M_contig12882.5772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp AFPKQQELYDHVCIDMNQVLHVALRKARDENHAMRRIFRDVNHTLRRCAPback to top mRNA from alignment at M-pyrifera_M_contig12882:1792..4612+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12882.5772.1 ID=mRNA_M-pyrifera_M_contig12882.5772.1|Name=mRNA_M-pyrifera_M_contig12882.5772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2821bp|location=Sequence derived from alignment at M-pyrifera_M_contig12882:1792..4612+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12882:1792..4612+ >mRNA_M-pyrifera_M_contig12882.5772.1 ID=mRNA_M-pyrifera_M_contig12882.5772.1|Name=mRNA_M-pyrifera_M_contig12882.5772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig12882:1792..4612+ (Macrocystis pyrifera P11B4 male)back to top |