mRNA_M-pyrifera_M_contig128642.5751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128642.5751.1
Unique NamemRNA_M-pyrifera_M_contig128642.5751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A1E3PIU9_9ASCO (Dolichyldiphosphatase n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PIU9_9ASCO)

HSP 1 Score: 69.3 bits (168), Expect = 8.340e-12
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTFEKFGVSLVAVLGGMS--VCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLSAPPPSTGKKE 354
            G PS HAQF+ Y AT++ LW+L     ++S   K  V+ V  L G+S  V  SRV L YH   QV++G+VLG+ + +GW  +   L    I   L   S+ R+L  +D +A   S  ++E
Sbjct:  106 GMPSAHAQFVSYYATFITLWILFRVRYNFSFTRK--VTRVGSLIGLSLVVAYSRVYLHYHSGAQVLIGYVLGIVLAIGWFIVVCLLRDLGIIDLLLDTSIARWLYIKDTAAEKSSFVREE 223          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: PDF1_SCHPO (Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=PDF1_SCHPO)

HSP 1 Score: 67.8 bits (164), Expect = 8.780e-11
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTFEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRD 318
            G PS+H+QFMG+ + +++ W          +   F    + +     VC+SR LL++HYL QVV G+++G GVGL W ++  +L    +   L SL   ++   +D
Sbjct:  492 GMPSSHSQFMGFFSAYMIAWDYKYRRSQCFSMLSFAKYAIYLTLSTFVCSSRYLLDFHYLTQVVYGYMIGFGVGLFWVYLVGKLRSLGVTKWLLSLPPLQFFYIKD 597          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A6P8H9C4_ACTTE (Dolichyldiphosphatase n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8H9C4_ACTTE)

HSP 1 Score: 65.9 bits (159), Expect = 2.060e-10
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWST---------FEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLSAPP 333
            G PSNH+QFMG+ A ++VL++        ST           K  V+   +L  ++V  SRV L YH ++Q+  G V+G  +G+ W    + +L P +FP +++  +  YL  RD +  P
Sbjct:  113 GMPSNHSQFMGFFAVYMVLFIYCRLHYSQSTTMWDDLLDNLWKHAVATGTILLSLAVAFSRVYLRYHDINQISAGLVIGGAMGVAWFIFTQTVLTP-LFPVITAWPVAEYLMIRDSTLIP 231          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A1V8SKB0_9PEZI (Dolichyldiphosphatase n=4 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SKB0_9PEZI)

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-10
Identity = 43/121 (35.54%), Postives = 59/121 (48.76%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTFEK------FGVS--------LVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDL 321
            G PS+HAQFM Y A ++ LW++V   RH    EK       G++        L A +   +V ASRV L YHY HQV +G+ LG    L W  +     +  +   L  L   ++L  RDL
Sbjct:   89 GMPSSHAQFMAYWAVYLGLWVVV---RHRPALEKRREGGYVGIAVWQRGVLGLAAFVLSAAVGASRVELNYHYPHQVYVGFALGTACALAWFVVTAGARYYGLLDWLLELPPMQWLRMRDL 206          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A7RWC1_NEMVE (Dolichyldiphosphatase n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWC1_NEMVE)

HSP 1 Score: 65.1 bits (157), Expect = 3.950e-10
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWST---------FEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLSAPP 333
            G PS+H+QFMG+ A ++VL++        ST           K  V+L ++   ++V  SRV L YH ++QV  G ++G  +G+ W    + +L P +FP +++  +  YL  RD +  P
Sbjct:  113 GMPSDHSQFMGFFAVYMVLFIYCRLHYSQSTTMWDDLLDNLWKHAVALGSIALSLAVAFSRVYLRYHDINQVAAGLLIGGAMGVAWFMFTQTVLTP-LFPVITAWPVAEYLMIRDSTLIP 231          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A5A8DJ10_CAFRO (Multifunctional fusion protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ10_CAFRO)

HSP 1 Score: 65.9 bits (159), Expect = 4.170e-10
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTFEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLS 324
            G PS+HAQFM +AA +V+L+  +  G+    + + G  L AV    +V  SRV L YH   Q+++G ++G   G+ W  +   LL P  F A++   L R+L  RD S
Sbjct:   99 GMPSDHAQFMFFAAAYVLLFASLRWGQP--LYARAGWCLAAVCFAAAVALSRVYLMYHTPEQILVGALVGSVAGVAWFAVTEALLQPS-FRAVAETPLARWLLVRDCS 203          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A484DVE3_BRELC (Dolichyldiphosphatase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVE3_BRELC)

HSP 1 Score: 63.5 bits (153), Expect = 1.010e-9
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLL--VAGGRH---WSTFEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLS 324
            G PS H+QFMG+ AT+ V++    +   RH   W T    GV  +AVL     C SR+ L+YH + QVV+G   G+ +G+ W  +  R + P +FP ++     R+   RD+S
Sbjct:   88 GMPSAHSQFMGFFATYSVVYTAKRLNERRHLEQWITI--CGVIFMAVL----TCYSRIHLKYHSIDQVVVGAFFGILIGIFWYALVAR-ISPKLFPLVTETRFARFFYMRDIS 193          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: A0A482R6Q2_9ARCH (Phosphatase PAP2 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R6Q2_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 2.190e-9
Identity = 34/108 (31.48%), Postives = 54/108 (50.00%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTFEKFGVSLVAVL--GGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRD 318
            G PSNHAQFMG+AA ++ LW      + W    +   +L+  +     +V  SRV L YH + QV++G+ +G      W  +   +  P  F  +++ +  R L  RD
Sbjct:   26 GMPSNHAQFMGFAAVYISLWAC----KRWRVTARAKAALIVAVQAAAAAVMVSRVYLVYHSVEQVLVGYAVGAAAACTWFALVETVARPR-FRTVAASAWARALRLRD 128          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: S3BRB4_OPHP1 (Dolichyldiphosphatase n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3BRB4_OPHP1)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-8
Identity = 42/136 (30.88%), Postives = 60/136 (44.12%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLVAGGRHWSTF----------------------------EKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLS 324
            G PS+HAQF GY A  + L+LLV   +  +T                             ++ G+S+VA +    +  SRV L YH   QV +G+V G+ VG GW      +    +     SL L +YL  RDL+
Sbjct:  136 GMPSSHAQFAGYWALTIALFLLVRYQKTQNTXXXXXXXXXXGAKKTTSSAATRRDTLTLTQRVGISVVAFVVAFLIAGSRVYLHYHTPKQVTVGFVAGLVVGAGWFAATAVVRQLGLLDWALSLPLAQYLRLRDLA 271          
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Match: F0X971_GROCL (Dynein heavy chain, cytoplasmic n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0X971_GROCL)

HSP 1 Score: 60.1 bits (144), Expect = 4.800e-8
Identity = 43/129 (33.33%), Postives = 61/129 (47.29%), Query Frame = 1
Query:    1 GNPSNHAQFMGYAATWVVLWLLV----------------AGGRHWSTFEKFGVSLVAVLGGMSVCASRVLLEYHYLHQVVLGWVLGVGVGLGW----TWIDRRLLHPYIFPALSSLSLFRYLNFRDLSA 327
            G PS+HAQF GY A  + L+LLV                +    WS  E+   S  A +  + V  SRV L YH   QV++G+  G+ VG  W    T++ R  L  ++     +L   R+L  RDL+A
Sbjct: 4578 GMPSSHAQFAGYWAVTIALFLLVRYRGQNRIPQNRQRQESPQNSWSLAERVATSTAAFVVAVLVAWSRVYLHYHTPRQVLVGFAAGLLVGFAWFAATTFVRRCGLLRWVL----ALPPARWLRIRDLAA 4702          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128642.5751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A1E3PIU9_9ASCO8.340e-1237.50Dolichyldiphosphatase n=1 Tax=Nadsonia fulvescens ... [more]
PDF1_SCHPO8.780e-1132.08Palmitoyl-protein thioesterase-dolichyl pyrophosph... [more]
A0A6P8H9C4_ACTTE2.060e-1032.50Dolichyldiphosphatase n=2 Tax=Actiniaria TaxID=610... [more]
A0A1V8SKB0_9PEZI2.900e-1035.54Dolichyldiphosphatase n=4 Tax=Rachicladosporium Ta... [more]
A7RWC1_NEMVE3.950e-1031.67Dolichyldiphosphatase n=1 Tax=Nematostella vectens... [more]
A0A5A8DJ10_CAFRO4.170e-1037.04Multifunctional fusion protein n=4 Tax=Cafeteria r... [more]
A0A484DVE3_BRELC1.010e-936.28Dolichyldiphosphatase n=1 Tax=Bremia lactucae TaxI... [more]
A0A482R6Q2_9ARCH2.190e-931.48Phosphatase PAP2 family protein n=1 Tax=archaeon T... [more]
S3BRB4_OPHP11.750e-830.88Dolichyldiphosphatase n=1 Tax=Ophiostoma piceae (s... [more]
F0X971_GROCL4.800e-833.33Dynein heavy chain, cytoplasmic n=1 Tax=Grosmannia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128642contigM-pyrifera_M_contig128642:127..486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.2808487-CDS-M-pyrifera_M_contig128642:126..4591622815799.2808487-CDS-M-pyrifera_M_contig128642:126..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128642 127..459 -
1692277574.7767859-CDS-M-pyrifera_M_contig128642:126..4591692277574.7767859-CDS-M-pyrifera_M_contig128642:126..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128642 127..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.3020813-UTR-M-pyrifera_M_contig128642:459..4861622815799.3020813-UTR-M-pyrifera_M_contig128642:459..486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128642 460..486 -
1692277574.787279-UTR-M-pyrifera_M_contig128642:459..4861692277574.787279-UTR-M-pyrifera_M_contig128642:459..486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128642 460..486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128642.5751.1prot_M-pyrifera_M_contig128642.5751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128642 127..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128642.5751.1

>prot_M-pyrifera_M_contig128642.5751.1 ID=prot_M-pyrifera_M_contig128642.5751.1|Name=mRNA_M-pyrifera_M_contig128642.5751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MGYAATWVVLWLLVAGGRHWSTFEKFGVSLVAVLGGMSVCASRVLLEYHY
LHQVVLGWVLGVGVGLGWTWIDRRLLHPYIFPALSSLSLFRYLNFRDLSA
PPPSTGKKEM*
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mRNA from alignment at M-pyrifera_M_contig128642:127..486-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128642.5751.1 ID=mRNA_M-pyrifera_M_contig128642.5751.1|Name=mRNA_M-pyrifera_M_contig128642.5751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig128642:127..486- (Macrocystis pyrifera P11B4 male)
GGAAATCCTTCAAACCATGCTCAATTTATGGGCTACGCAGCGACATGGGT TGTTTTGTGGCTGTTGGTGGCAGGAGGGAGACATTGGTCTACTTTCGAAA AGTTTGGTGTTTCTCTTGTCGCAGTGTTGGGAGGGATGAGTGTTTGTGCA TCTCGAGTACTACTCGAGTACCACTATTTGCACCAAGTGGTTCTTGGGTG GGTATTAGGAGTAGGAGTTGGTTTGGGTTGGACTTGGATTGATCGCCGAC TTCTCCACCCATATATCTTCCCCGCTCTCTCCTCCCTCTCTCTATTTCGT TACCTCAACTTCAGAGACCTCTCAGCACCACCCCCCTCCACTGGGAAGAA GGAAATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128642:127..486-

>mRNA_M-pyrifera_M_contig128642.5751.1 ID=mRNA_M-pyrifera_M_contig128642.5751.1|Name=mRNA_M-pyrifera_M_contig128642.5751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig128642:127..486- (Macrocystis pyrifera P11B4 male)
ATGGGCTACGCAGCGACATGGGTTGTTTTGTGGCTGTTGGTGGCAGGAGG
GAGACATTGGTCTACTTTCGAAAAGTTTGGTGTTTCTCTTGTCGCAGTGT
TGGGAGGGATGAGTGTTTGTGCATCTCGAGTACTACTCGAGTACCACTAT
TTGCACCAAGTGGTTCTTGGGTGGGTATTAGGAGTAGGAGTTGGTTTGGG
TTGGACTTGGATTGATCGCCGACTTCTCCACCCATATATCTTCCCCGCTC
TCTCCTCCCTCTCTCTATTTCGTTACCTCAACTTCAGAGACCTCTCAGCA
CCACCCCCCTCCACTGGGAAGAAGGAAATGTGAATGGGCTACGCAGCGAC
ATGGGTTGTTTTGTGGCTGTTGGTGGCAGGAGGGAGACATTGGTCTACTT
TCGAAAAGTTTGGTGTTTCTCTTGTCGCAGTGTTGGGAGGGATGAGTGTT
TGTGCATCTCGAGTACTACTCGAGTACCACTATTTGCACCAAGTGGTTCT
TGGGTGGGTATTAGGAGTAGGAGTTGGTTTGGGTTGGACTTGGATTGATC
GCCGACTTCTCCACCCATATATCTTCCCCGCTCTCTCCTCCCTCTCTCTA
TTTCGTTACCTCAACTTCAGAGACCTCTCAGCACCACCCCCCTCCACTGG
GAAGAAGGAAATGTGA
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