mRNA_M-pyrifera_M_contig128588.5742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128588.5742.1
Unique NamemRNA_M-pyrifera_M_contig128588.5742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A7S4MIW0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MIW0_9EUKA)

HSP 1 Score: 158 bits (400), Expect = 5.870e-42
Identity = 80/153 (52.29%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    7 LDNVVTCSPTDTLEHTITKSLAAKIHRVWVVDADNKPLGVVTLSDMMNVLRGLDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGE 465
            ++  +TC  +DTL   +++ +    + VWVV+ +  P+  VTLSD++N ++G++EDL SR LAVYGR AM++L  + +LISG+NGLGAEI KNVILA V  VTLHD+  T+  DL SHFYL E DVGKNRA +CL ++ ELNPSV+V     E
Sbjct:  250 VEKPLTCVRSDTLGDIMSRLVDTHHNHVWVVNGETLPVSSVTLSDIVNRMQGINEDLQSRALAVYGRGAMKKLFATKVLISGLNGLGAEIAKNVILANVNSVTLHDSNNTSFADLNSHFYLSESDVGKNRAESCLAQLAELNPSVRVTTCTAE 402          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A843WZ79_COLES (ThiF domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WZ79_COLES)

HSP 1 Score: 132 bits (331), Expect = 6.850e-36
Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGELN 471
            +DEDLHSRQLAVYGR+ MR+L  SN+LISG+NGLGAEI KN++LAGV+ VTLHD     + DL S+F+L EEDVGKNRALAC++K++ELN +V +     +L+
Sbjct:   74 IDEDLHSRQLAVYGRETMRRLFASNVLISGINGLGAEIAKNLVLAGVKSVTLHDDEAVDLWDLSSNFFLSEEDVGKNRALACVQKLQELNNAVLISTLTTKLS 176          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A6J5XVR8_PRUAR (ThiF domain-containing protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5XVR8_PRUAR)

HSP 1 Score: 127 bits (320), Expect = 4.110e-35
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGEL 468
            +DEDLHSRQLAVYGR+ MR+L  SNIL+SG+ GLGAEI KN++LAGV+ VTLHD     + DL S+F+  E+D+GKNRALAC++K++ELN +V +     EL
Sbjct:   11 IDEDLHSRQLAVYGRETMRRLFASNILVSGLQGLGAEIAKNLVLAGVKSVTLHDDGVVELWDLSSNFFFSEDDIGKNRALACVQKLQELNNAVIISTLTTEL 112          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A0L0DMQ1_THETB (Ubiquitin-activating enzyme E1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DMQ1_THETB)

HSP 1 Score: 137 bits (344), Expect = 2.020e-34
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGEL 468
            +DEDL SRQLAVYGR+AM +L  S +LI+GM+GLGAEI KNVILA V  VTLHDTA+  I DLG+HFYL+EEDVGKNRA ACL +++ELNPSV   A   +L
Sbjct:   22 IDEDLQSRQLAVYGREAMMRLAKSKVLITGMDGLGAEIAKNVILANVGSVTLHDTAEVAIADLGAHFYLKEEDVGKNRAEACLGELQELNPSVMTVASQRDL 123          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A2C9WIK8_MANES (ThiF domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WIK8_MANES)

HSP 1 Score: 128 bits (322), Expect = 2.540e-34
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   49 HTITKSLAAKIHRVWVVDADNKPLGVVTLSDMMNVLRGLDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKV 447
            H IT + +  I+   VV + N+  G++      N L  +DEDLHSRQLAVYGR+ MR+L  SN+L+SGM GLGAEI KN+ILAGV+ +TLHD     + DL S+F   E DVGKNRALA ++K++ELN +V V
Sbjct:   43 HAITSATSTTINNCSVVGS-NRSSGLIMAPGDAN-LSDIDEDLHSRQLAVYGRETMRRLFASNVLVSGMQGLGAEIAKNLILAGVKSITLHDEQTVELWDLSSNFIFSENDVGKNRALASVQKLQELNNAVVV 173          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A835XLJ1_9CHLO (UBA_e1_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLJ1_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 3.720e-34
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGELN 471
            +DE+LHSRQLAVYGR+AM+++  S++LI GMNGLG E+ KNVILAGV+ VT+HDTAK T+ DL + FYL E+DVGKNRA AC +K++ELN SV V A  G L+
Sbjct:   16 IDENLHSRQLAVYGREAMKRMAKSSVLICGMNGLGVEVAKNVILAGVQAVTVHDTAKVTVQDLSAQFYLTEQDVGKNRAEACREKLQELNTSVAVAAASGPLS 118          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A8J1C1_CHLRE (Ubiquitin-activating enzyme E1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J1C1_CHLRE)

HSP 1 Score: 135 bits (341), Expect = 5.070e-34
Identity = 65/102 (63.73%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGEL 468
            +DE+LHSRQLAVYGR+AM+++  S++LI G NGLG E+ KNVILAGVRGVT+HDTAK  + DL + FYL E+DVG+NRA AC +K++ELN  V V A  GEL
Sbjct:   36 IDENLHSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVRGVTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREKLQELNTGVAVHAASGEL 137          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: UPI000C6CF6C6 (ubiquitin-like modifier-activating enzyme 1 isoform X1 n=3 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CF6C6)

HSP 1 Score: 126 bits (316), Expect = 1.210e-33
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGEL 468
            +D+ L+SRQL V G +AMR++  S+ILISGMNGLG EI+KNVIL GV+ VT+HDT    + DL S +YL EEDVGKNRA  C  K+ ELNP V V  H GEL
Sbjct:   50 IDDSLYSRQLYVLGHEAMRRMATSDILISGMNGLGLEISKNVILGGVKSVTIHDTKNCELSDLSSQYYLTEEDVGKNRAEVCRSKLAELNPYVSVSLHTGEL 151          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A843UDN8_COLES (E1 ubiquitin-activating enzyme n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UDN8_COLES)

HSP 1 Score: 134 bits (338), Expect = 1.290e-33
Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGELN 471
            +DEDLHSRQLAVYGR+ MR+L  SN+LISGMNGLGAEI KN++LAGV+ VTLHD     + DL S+F+  E+DVGKNRALAC++K++ELN +V +  H  +L+
Sbjct:  122 IDEDLHSRQLAVYGRETMRRLFASNVLISGMNGLGAEIAKNLVLAGVKSVTLHDDGAVDMWDLSSNFFFSEDDVGKNRALACVQKLQELNNTVIISTHTTKLS 224          
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Match: A0A0D9XN80_9ORYZ (ThiF domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XN80_9ORYZ)

HSP 1 Score: 127 bits (320), Expect = 1.600e-33
Identity = 60/103 (58.25%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  163 LDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAGVRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVEAHDGELN 471
            +DEDLHSRQLAVYGR+ M++L  SN+L+SG+NGLGAEI KN++LAGV+ VTLHD     + DL S+F+L E+DVG+NRA AC++K++ELN +V +    G+L+
Sbjct:  102 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLNGLGAEIAKNLVLAGVKSVTLHDDNNVDLWDLSSNFFLSEKDVGQNRAQACIQKLQELNNAVIISTITGDLS 204          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128588.5742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MIW0_9EUKA5.870e-4252.29Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A843WZ79_COLES6.850e-3662.14ThiF domain-containing protein n=1 Tax=Colocasia e... [more]
A0A6J5XVR8_PRUAR4.110e-3559.80ThiF domain-containing protein n=1 Tax=Prunus arme... [more]
A0A0L0DMQ1_THETB2.020e-3467.65Ubiquitin-activating enzyme E1 n=1 Tax=Thecamonas ... [more]
A0A2C9WIK8_MANES2.540e-3452.63ThiF domain-containing protein n=1 Tax=Manihot esc... [more]
A0A835XLJ1_9CHLO3.720e-3464.08UBA_e1_C domain-containing protein n=1 Tax=Edaphoc... [more]
A8J1C1_CHLRE5.070e-3463.73Ubiquitin-activating enzyme E1 n=3 Tax=Chlamydomon... [more]
UPI000C6CF6C61.210e-3360.78ubiquitin-like modifier-activating enzyme 1 isofor... [more]
A0A843UDN8_COLES1.290e-3362.14E1 ubiquitin-activating enzyme n=1 Tax=Colocasia e... [more]
A0A0D9XN80_9ORYZ1.600e-3358.25ThiF domain-containing protein n=1 Tax=Leersia per... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128588contigM-pyrifera_M_contig128588:11..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog529818.AMSG_01266T0
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0033554,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0070647,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.7842648-CDS-M-pyrifera_M_contig128588:10..4811622815798.7842648-CDS-M-pyrifera_M_contig128588:10..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128588 11..481 +
1692277574.5522606-CDS-M-pyrifera_M_contig128588:10..4811692277574.5522606-CDS-M-pyrifera_M_contig128588:10..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128588 11..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128588.5742.1prot_M-pyrifera_M_contig128588.5742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128588 11..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128588.5742.1

>prot_M-pyrifera_M_contig128588.5742.1 ID=prot_M-pyrifera_M_contig128588.5742.1|Name=mRNA_M-pyrifera_M_contig128588.5742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
RKLDNVVTCSPTDTLEHTITKSLAAKIHRVWVVDADNKPLGVVTLSDMMN
VLRGLDEDLHSRQLAVYGRQAMRQLTVSNILISGMNGLGAEITKNVILAG
VRGVTLHDTAKTTIGDLGSHFYLREEDVGKNRALACLKKMRELNPSVKVE
AHDGELN
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mRNA from alignment at M-pyrifera_M_contig128588:11..481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128588.5742.1 ID=mRNA_M-pyrifera_M_contig128588.5742.1|Name=mRNA_M-pyrifera_M_contig128588.5742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig128588:11..481+ (Macrocystis pyrifera P11B4 male)
CGCAAGCTTGACAACGTTGTGACTTGCTCACCCACAGACACCCTCGAGCA CACCATCACGAAGAGTCTTGCTGCCAAGATCCACCGTGTGTGGGTTGTGG ACGCAGACAACAAGCCTCTGGGTGTGGTGACGCTCAGCGACATGATGAAT GTGCTGCGCGGCCTGGACGAGGATCTTCATAGCAGACAGTTGGCTGTGTA CGGTCGCCAGGCTATGCGGCAGCTGACGGTCTCGAACATTCTAATCTCTG GGATGAACGGCCTTGGTGCTGAGATCACCAAGAATGTGATCCTCGCAGGG GTTCGGGGTGTGACGCTTCATGACACTGCTAAGACCACCATTGGCGATCT TGGATCCCACTTCTATCTTCGTGAGGAAGATGTGGGCAAGAACCGCGCAC TGGCATGCCTGAAGAAGATGAGGGAGCTGAACCCATCCGTGAAGGTGGAA GCGCATGATGGAGAGTTGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128588:11..481+

>mRNA_M-pyrifera_M_contig128588.5742.1 ID=mRNA_M-pyrifera_M_contig128588.5742.1|Name=mRNA_M-pyrifera_M_contig128588.5742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig128588:11..481+ (Macrocystis pyrifera P11B4 male)
CGCAAGCTTGACAACGTTGTGACTTGCTCACCCACAGACACCCTCGAGCA
CACCATCACGAAGAGTCTTGCTGCCAAGATCCACCGTGTGTGGGTTGTGG
ACGCAGACAACAAGCCTCTGGGTGTGGTGACGCTCAGCGACATGATGAAT
GTGCTGCGCGGCCTGGACGAGGATCTTCATAGCAGACAGTTGGCTGTGTA
CGGTCGCCAGGCTATGCGGCAGCTGACGGTCTCGAACATTCTAATCTCTG
GGATGAACGGCCTTGGTGCTGAGATCACCAAGAATGTGATCCTCGCAGGG
GTTCGGGGTGTGACGCTTCATGACACTGCTAAGACCACCATTGGCGATCT
TGGATCCCACTTCTATCTTCGTGAGGAAGATGTGGGCAAGAACCGCGCAC
TGGCATGCCTGAAGAAGATGAGGGAGCTGAACCCATCCGTGAAGGTGGAA
GCGCATGATGGAGAGTTGAACCGCAAGCTTGACAACGTTGTGACTTGCTC
ACCCACAGACACCCTCGAGCACACCATCACGAAGAGTCTTGCTGCCAAGA
TCCACCGTGTGTGGGTTGTGGACGCAGACAACAAGCCTCTGGGTGTGGTG
ACGCTCAGCGACATGATGAATGTGCTGCGCGGCCTGGACGAGGATCTTCA
TAGCAGACAGTTGGCTGTGTACGGTCGCCAGGCTATGCGGCAGCTGACGG
TCTCGAACATTCTAATCTCTGGGATGAACGGCCTTGGTGCTGAGATCACC
AAGAATGTGATCCTCGCAGGGGTTCGGGGTGTGACGCTTCATGACACTGC
TAAGACCACCATTGGCGATCTTGGATCCCACTTCTATCTTCGTGAGGAAG
ATGTGGGCAAGAACCGCGCACTGGCATGCCTGAAGAAGATGAGGGAGCTG
AACCCATCCGTGAAGGTGGAAGCGCATGATGGAGAGTTGAAC
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