mRNA_M-pyrifera_M_contig128201.5668.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128201.5668.1
Unique NamemRNA_M-pyrifera_M_contig128201.5668.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A7Y5W6N5_9BACT (Metal ABC transporter permease n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5W6N5_9BACT)

HSP 1 Score: 133 bits (334), Expect = 9.290e-34
Identity = 73/158 (46.20%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAV-SDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQ--AEDEVPASSH 465
            G+++  +  R+ RR VGR DLLRA +E  E +V +D +P    + A  + F  L++ R+W    +RRL+ AA +E L+    +  + LT  GA +ARR+ RNHRLWEMYL+ YA +A SH+DRDAD IE+VLDP+L+AELE  L +  A+  +PAS H
Sbjct:  313 GVLVQAFALRRSRRRVGRHDLLRAMYENVESSVETDGSPEGLDLTAQPVAFDRLLATRSWSAARVRRLLAAAQREGLVTGNASSGYRLTARGAADARRVVRNHRLWEMYLITYADVATSHIDRDADEIEYVLDPDLVAELETALSRRRADLAMPASPH 470          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A349K4S5_9BACT (Iron ABC transporter (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A349K4S5_9BACT)

HSP 1 Score: 127 bits (319), Expect = 1.480e-33
Identity = 72/157 (45.86%), Postives = 95/157 (60.51%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAED--EVPASSH 465
            G+V   W+Q +LRR VGR  LLRA++E+ E    D     E +    I    L++ R+W    + RL+  A  ED L   G     L+E+G  EA R+ RNHRLWE+YL++YA IAPSHVDRDADL+EHVLD E++ +LE +L       EVP S H
Sbjct:   67 GVVPRSWRQARLRRKVGRQHLLRAAYEILEGQQPD---VAEPIRNLPIALDSLMTHRSWSAQQINRLLRTARNEDHLEEAGPGQVRLSEAGFGEAARVTRNHRLWELYLIRYADIAPSHVDRDADLVEHVLDAEVVDQLESELQDRPSSLEVPPSPH 220          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A518C010_9BACT (Manganese transport system membrane protein MntB n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518C010_9BACT)

HSP 1 Score: 129 bits (323), Expect = 2.720e-32
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTE---HAVSDPTP-TPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAED--EVPASSHTTSGG 480
            G++  W +  +L+R +GR  LLRA+FEL E   H  S   P TP       +   DL++ R+W P  LR  I  A  ED +         L+E+G  EA RI RNHRLWE++L+++A IAPSHVDRDAD++EHVLDP+++ +LE +L+ A+   +VP S H  + G
Sbjct:  298 GVLTRWLRHHRLQRKIGRQHLLRAAFELLEARRHPESSHIPNTP-------VRIADLLARRSWTPGKLRGFIRTARAEDHIESVDGRQLRLSEAGFGEAARITRNHRLWELFLIRHADIAPSHVDRDADMVEHVLDPDIVRQLEAELEAADHTLDVPPSPHRLTPG 456          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A858RPL9_9BACT (Iron chelate uptake ABC transporter family permease subunit n=1 Tax=Luteolibacter luteus TaxID=2728835 RepID=A0A858RPL9_9BACT)

HSP 1 Score: 127 bits (318), Expect = 1.120e-31
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLH-PTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAEDEVPASSH 465
            G++  W  QR+L+R VGR  LLRA++E+ E     P   P       ++  +L+  R+W P  L R +  A +ED L  PT      L+ESG  EA RI RNHRLWE+YL+++A IAPSHVDRDADL+EH+L  E++ ELE +L  +  +VPAS H
Sbjct:  291 GVLPRWLDQRRLQRRVGRQHLLRAAYEILESRSRPPVNDP-------VSRTELLEHRSWTPHQLARELSHARKEDHLEAPTDRSMIHLSESGFGEAARITRNHRLWELYLIRHADIAPSHVDRDADLVEHILGSEMVRELETEL-ASRTQVPASPH 438          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A7V9J383_9BACT (Metal ABC transporter permease n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V9J383_9BACT)

HSP 1 Score: 119 bits (299), Expect = 6.470e-31
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAEDEVPASSH 465
            G+V     Q  L+R VGR  LLRA++EL E         P K VA  ++   +++ R+W P   R+++  A  ED +  +  DT  L+ESG  EA R+ RNHRLWE+YL+++A IAPSHVDRDAD++EH+L  EL+ +LE +L   E  +P S H
Sbjct:   55 GVVPRLRDQAHLKRRVGRQHLLRAAYELAERQSE-----PVKNVA--VSRQAMLAHRSWSPREFRKILERAKDEDHIEASSADTIHLSESGFGEAARVTRNHRLWELYLIRHADIAPSHVDRDADMVEHILGAELVRKLEAELGD-EGTLPRSPH 201          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A2E5QT46_9BACT (Iron ABC transporter n=5 Tax=Bacteria TaxID=2 RepID=A0A2E5QT46_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.340e-30
Identity = 71/157 (45.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAED--EVPASSH 465
            G++   W+Q +LRR VGR  LLRA++E+ E    D     E +    I    L + R+W    + RL+  A  ED L   G     L+E+G  EA R+ RNHRLWE+YL+ YA IAPSHVDRDADL+EHVLD E++ +LE +L       EVP S H
Sbjct:  322 GVIPRSWRQARLRRKVGRQHLLRAAYEILEGQQPD---VAEPIRNLPIALDSLRTHRSWSAQQINRLLRTARAEDHLEEAGPGQVRLSEAGFGEAARVTRNHRLWELYLIHYADIAPSHVDRDADLVEHVLDAEVVHQLESELQDRPSSLEVPPSPH 475          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A517QIS4_9PLAN (Manganese transport system membrane protein MntB n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QIS4_9PLAN)

HSP 1 Score: 124 bits (311), Expect = 1.830e-30
Identity = 68/150 (45.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAEDEV 450
            G++  W +Q++L+  VG  DLLRA +E+TE  +     T   +++  I+  +L+ MR W P  LR L   A    L+    N    L   GA  ARR AR+HRLWE YL+QYA IAPSHVDRDAD IEH+LD E+I  LE  L  A  +V
Sbjct:  319 GVLWKWIEQKRLQSRVGERDLLRAVYEITEGRIDHRQLTDPVLLSQRISQAELLQMRTWSPARLRSLTRQAASRHLVLIRANGEIQLAPDGAALARRAARDHRLWEQYLIQYADIAPSHVDRDADQIEHILDAEVIRGLEESLASAGHDV 468          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A7W1HMF2_9BACT (Metal ABC transporter permease n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1HMF2_9BACT)

HSP 1 Score: 121 bits (304), Expect = 3.770e-30
Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAEDEVPASSH 465
            G++  W  Q +L+R VGR  LLRA++EL E         P    A       +++ R+W P   R+++  A  ED +  +  DT  L+ESG  EA R+ RNHRLWE+YL+++A IAPSHVDRDAD++EH+L  EL+ +LE +L   E   P S H
Sbjct:  215 GVIPRWRDQARLKRRVGRQHLLRAAYELAERQTDPVKNVPVSRQA-------MLAHRSWSPRQFRKILARARGEDHIEASSADTIHLSESGFGEAVRVTRNHRLWELYLIRHADIAPSHVDRDADMVEHILGAELVRKLEAELGD-EGTHPRSPH 361          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: A0A4V0XMZ0_9BACT (Manganese ABC transporter permease n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A4V0XMZ0_9BACT)

HSP 1 Score: 121 bits (303), Expect = 2.090e-29
Identity = 69/156 (44.23%), Postives = 89/156 (57.05%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLD-QAEDEVPASSH 465
            G+   W  QRQ  + +GR DLLRA +EL E  +     T E +  +EI+  +L  MR W       L+  AV+E LL     D + LT  GAEEAR   R HRLWE+YL+    + P  VDR AD IEHVLDP+ +AELE +LD ++   VP S H
Sbjct:  300 GLFPRWRSQRQFEQRIGRSDLLRACYELLEPILGANETTQESLTKFEIDELELSGMRQWPAGRFHGLVSTAVREGLLVSMSTDGYQLTSRGAEEARDAVRRHRLWEIYLLTQTDLDPRLVDRGADGIEHVLDPDQLAELERRLDNESPHGVPPSPH 455          
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Match: UPI001987C992 (Metal ABC transporter permease n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001987C992)

HSP 1 Score: 121 bits (304), Expect = 2.140e-29
Identity = 69/156 (44.23%), Postives = 89/156 (57.05%), Query Frame = 1
Query:    1 GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINFGDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIARNHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQL-DQAEDEVPASSH 465
            G+   W  QRQ  R +GR DLLRA +EL E  +     T E +  YEI+  +L +MR W       L+  AV+E LL  T    + LT+ GAEE+R   R HRLWE+YL+    + P  VDR AD IEHVLDP+ +A+LE QL  Q    +P S H
Sbjct:  337 GLWPRWRSQRQFERRIGRSDLLRACYELLEPILGPDQTTQESLTKYEIDDLELSAMRQWPTGHFHGLVSTAVRESLLVETSAGGYQLTQRGAEESRDAVRRHRLWEIYLLTQTDLDPRLVDRGADGIEHVLDPQQLADLERQLVTQLPQGIPPSPH 492          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128201.5668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5W6N5_9BACT9.290e-3446.20Metal ABC transporter permease n=1 Tax=Pirellulale... [more]
A0A349K4S5_9BACT1.480e-3345.86Iron ABC transporter (Fragment) n=1 Tax=Verrucomic... [more]
A0A518C010_9BACT2.720e-3243.37Manganese transport system membrane protein MntB n... [more]
A0A858RPL9_9BACT1.120e-3146.15Iron chelate uptake ABC transporter family permeas... [more]
A0A7V9J383_9BACT6.470e-3143.87Metal ABC transporter permease n=1 Tax=Chthoniobac... [more]
A0A2E5QT46_9BACT1.340e-3045.22Iron ABC transporter n=5 Tax=Bacteria TaxID=2 RepI... [more]
A0A517QIS4_9PLAN1.830e-3045.33Manganese transport system membrane protein MntB n... [more]
A0A7W1HMF2_9BACT3.770e-3042.58Metal ABC transporter permease n=1 Tax=Chthoniobac... [more]
A0A4V0XMZ0_9BACT2.090e-2944.23Manganese ABC transporter permease n=2 Tax=Plancto... [more]
UPI001987C9922.140e-2944.23Metal ABC transporter permease n=1 Tax=Planctomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128201contigM-pyrifera_M_contig128201:16..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.0
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog344747.PM8797T_06862
Preferred namemntC
KEGG koko:K09819,ko:K11708
KEGG TC3.A.1.15
KEGG Pathwayko02010,map02010
KEGG ModuleM00243,M00319
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0042221,GO:0044464,GO:0050896,GO:0071944
EggNOG free text desc.COG1108 ABC-type Mn2 Zn2 transport systems permease
EggNOG OGs2IY19@203682,COG1108@1,COG1108@2,COG1321@1,COG1321@2
COG Functional cat.P
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.3161075-CDS-M-pyrifera_M_contig128201:15..5011622815795.3161075-CDS-M-pyrifera_M_contig128201:15..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128201 16..501 -
1692277573.2046514-CDS-M-pyrifera_M_contig128201:15..5011692277573.2046514-CDS-M-pyrifera_M_contig128201:15..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128201 16..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128201.5668.1prot_M-pyrifera_M_contig128201.5668.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128201 16..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128201.5668.1

>prot_M-pyrifera_M_contig128201.5668.1 ID=prot_M-pyrifera_M_contig128201.5668.1|Name=mRNA_M-pyrifera_M_contig128201.5668.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
GIVIHWWQQRQLRRDVGRVDLLRASFELTEHAVSDPTPTPEKMVAYEINF
GDLISMRAWEPTVLRRLIVAAVQEDLLHPTGNDTWSLTESGAEEARRIAR
NHRLWEMYLMQYAHIAPSHVDRDADLIEHVLDPELIAELEHQLDQAEDEV
PASSHTTSGGR*
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mRNA from alignment at M-pyrifera_M_contig128201:16..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128201.5668.1 ID=mRNA_M-pyrifera_M_contig128201.5668.1|Name=mRNA_M-pyrifera_M_contig128201.5668.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig128201:16..501- (Macrocystis pyrifera P11B4 male)
GGCATTGTGATTCACTGGTGGCAGCAGCGCCAATTGCGGCGAGATGTGGG CCGGGTTGACCTGCTACGGGCATCGTTCGAGTTGACTGAACATGCTGTCA GCGATCCGACACCGACGCCTGAGAAAATGGTCGCCTACGAGATCAACTTC GGTGACTTGATCAGCATGCGGGCATGGGAGCCGACCGTACTGCGTCGTTT GATTGTCGCAGCTGTTCAAGAAGACCTCCTGCATCCGACAGGAAACGATA CCTGGAGCTTGACCGAGTCGGGAGCCGAGGAAGCACGTCGCATCGCCCGC AACCATCGATTGTGGGAAATGTACCTCATGCAATATGCACACATCGCACC CAGCCATGTTGACCGAGATGCAGACCTGATTGAGCATGTGCTCGATCCGG AGTTGATCGCCGAGCTGGAGCACCAACTCGATCAAGCGGAAGACGAAGTG CCCGCGAGTTCACACACAACGAGCGGGGGCCGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128201:16..501-

>mRNA_M-pyrifera_M_contig128201.5668.1 ID=mRNA_M-pyrifera_M_contig128201.5668.1|Name=mRNA_M-pyrifera_M_contig128201.5668.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig128201:16..501- (Macrocystis pyrifera P11B4 male)
GGCATTGTGATTCACTGGTGGCAGCAGCGCCAATTGCGGCGAGATGTGGG
CCGGGTTGACCTGCTACGGGCATCGTTCGAGTTGACTGAACATGCTGTCA
GCGATCCGACACCGACGCCTGAGAAAATGGTCGCCTACGAGATCAACTTC
GGTGACTTGATCAGCATGCGGGCATGGGAGCCGACCGTACTGCGTCGTTT
GATTGTCGCAGCTGTTCAAGAAGACCTCCTGCATCCGACAGGAAACGATA
CCTGGAGCTTGACCGAGTCGGGAGCCGAGGAAGCACGTCGCATCGCCCGC
AACCATCGATTGTGGGAAATGTACCTCATGCAATATGCACACATCGCACC
CAGCCATGTTGACCGAGATGCAGACCTGATTGAGCATGTGCTCGATCCGG
AGTTGATCGCCGAGCTGGAGCACCAACTCGATCAAGCGGAAGACGAAGTG
CCCGCGAGTTCACACACAACGAGCGGGGGCCGTTAGGGCATTGTGATTCA
CTGGTGGCAGCAGCGCCAATTGCGGCGAGATGTGGGCCGGGTTGACCTGC
TACGGGCATCGTTCGAGTTGACTGAACATGCTGTCAGCGATCCGACACCG
ACGCCTGAGAAAATGGTCGCCTACGAGATCAACTTCGGTGACTTGATCAG
CATGCGGGCATGGGAGCCGACCGTACTGCGTCGTTTGATTGTCGCAGCTG
TTCAAGAAGACCTCCTGCATCCGACAGGAAACGATACCTGGAGCTTGACC
GAGTCGGGAGCCGAGGAAGCACGTCGCATCGCCCGCAACCATCGATTGTG
GGAAATGTACCTCATGCAATATGCACACATCGCACCCAGCCATGTTGACC
GAGATGCAGACCTGATTGAGCATGTGCTCGATCCGGAGTTGATCGCCGAG
CTGGAGCACCAACTCGATCAAGCGGAAGACGAAGTGCCCGCGAGTTCACA
CACAACGAGCGGGGGCCGTTAG
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