mRNA_M-pyrifera_M_contig128117.5651.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128117.5651.1
Unique NamemRNA_M-pyrifera_M_contig128117.5651.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128117.5651.1 vs. uniprot
Match: A0A2E0YXQ8_9GAMM (Uncharacterized protein n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0YXQ8_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 4.080e-19
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:   10 EVFDILVISYAVVHLHLQYRYWIRKDTNVFAKYCGQGR---SYEYVSKWVYFTKATWMIVLVPLQYLGLAFRPALVYSFLMYAIELQLLFPSGNIYNMLNLLLAVGAVIED 333
             ++ + ++ Y V+HL  ++ +W+  D  +FAKY  QG    ++  ++K VYFTKATWMI+LV L  L + FR AL  SFL+YA+EL LLFP  NIYN LNLLLA G  +++
Sbjct:   16 SLYGLFLLCYTVIHLKFEWNFWMLDDFAIFAKYA-QGDDPLTHLAIAKKVYFTKATWMILLVWLCALRVPFRRALAASFLVYAVELLLLFPF-NIYNGLNLLLAGGFALQE 124
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BLAST of mRNA_M-pyrifera_M_contig128117.5651.1 vs. uniprot
Match: A0A2E0QS49_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QS49_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-16
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:   19 DILVISYAVVHLHLQYRYWIRKDTNVFAKYCGQGRSYEYVSKWVYFTKATWMIVLVPLQYLGLAFRPALVYSFLMYAIELQLLFPSGNIYNMLNLLLAVGAV 324
            + ++I   +VHLHL+YR W++K+T++F KY G+      V+KW Y+ KA W++ L+ L Y  + FR ALVYSF  YA+ + L     N Y +  L+ A+  +
Sbjct:    3 EAIIIVILLVHLHLEYRIWVKKETDIFKKYRGENDDPMKVAKWAYYAKALWLVALILLLYFEVEFRDALVYSFFGYAVVVTLSL-GRNAYTIHQLIFALACL 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128117.5651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E0YXQ8_9GAMM4.080e-1947.75Uncharacterized protein n=1 Tax=Halioglobus sp. Ta... [more]
A0A2E0QS49_9BACT1.190e-1639.22Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128117contigM-pyrifera_M_contig128117:96..449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.5124123-CDS-M-pyrifera_M_contig128117:95..4491622815794.5124123-CDS-M-pyrifera_M_contig128117:95..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128117 96..449 -
1692277572.7839196-CDS-M-pyrifera_M_contig128117:95..4491692277572.7839196-CDS-M-pyrifera_M_contig128117:95..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128117 96..449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128117.5651.1prot_M-pyrifera_M_contig128117.5651.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128117 96..449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128117.5651.1

>prot_M-pyrifera_M_contig128117.5651.1 ID=prot_M-pyrifera_M_contig128117.5651.1|Name=mRNA_M-pyrifera_M_contig128117.5651.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MQVEVFDILVISYAVVHLHLQYRYWIRKDTNVFAKYCGQGRSYEYVSKWV
YFTKATWMIVLVPLQYLGLAFRPALVYSFLMYAIELQLLFPSGNIYNMLN
LLLAVGAVIEDCVPRFA*
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mRNA from alignment at M-pyrifera_M_contig128117:96..449-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128117.5651.1 ID=mRNA_M-pyrifera_M_contig128117.5651.1|Name=mRNA_M-pyrifera_M_contig128117.5651.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig128117:96..449- (Macrocystis pyrifera P11B4 male)
ATGCAGGTGGAGGTGTTTGATATTCTTGTGATCAGCTACGCTGTGGTGCA
TCTCCACTTGCAGTACCGCTACTGGATCCGAAAGGACACCAACGTCTTCG
CCAAGTACTGCGGCCAAGGAAGGAGCTACGAGTACGTAAGCAAGTGGGTC
TACTTCACGAAGGCGACATGGATGATTGTGCTGGTGCCACTGCAGTACCT
GGGCCTAGCCTTCCGGCCTGCCCTCGTCTACAGCTTCCTCATGTACGCCA
TCGAGCTCCAGCTCCTCTTCCCGAGCGGCAACATCTACAACATGCTCAAC
CTGTTGCTCGCAGTGGGCGCCGTCATTGAAGACTGTGTGCCTCGCTTTGC
CTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128117:96..449-

>mRNA_M-pyrifera_M_contig128117.5651.1 ID=mRNA_M-pyrifera_M_contig128117.5651.1|Name=mRNA_M-pyrifera_M_contig128117.5651.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig128117:96..449- (Macrocystis pyrifera P11B4 male)
ATGCAGGTGGAGGTGTTTGATATTCTTGTGATCAGCTACGCTGTGGTGCA
TCTCCACTTGCAGTACCGCTACTGGATCCGAAAGGACACCAACGTCTTCG
CCAAGTACTGCGGCCAAGGAAGGAGCTACGAGTACGTAAGCAAGTGGGTC
TACTTCACGAAGGCGACATGGATGATTGTGCTGGTGCCACTGCAGTACCT
GGGCCTAGCCTTCCGGCCTGCCCTCGTCTACAGCTTCCTCATGTACGCCA
TCGAGCTCCAGCTCCTCTTCCCGAGCGGCAACATCTACAACATGCTCAAC
CTGTTGCTCGCAGTGGGCGCCGTCATTGAAGACTGTGTGCCTCGCTTTGC
CTGAATGCAGGTGGAGGTGTTTGATATTCTTGTGATCAGCTACGCTGTGG
TGCATCTCCACTTGCAGTACCGCTACTGGATCCGAAAGGACACCAACGTC
TTCGCCAAGTACTGCGGCCAAGGAAGGAGCTACGAGTACGTAAGCAAGTG
GGTCTACTTCACGAAGGCGACATGGATGATTGTGCTGGTGCCACTGCAGT
ACCTGGGCCTAGCCTTCCGGCCTGCCCTCGTCTACAGCTTCCTCATGTAC
GCCATCGAGCTCCAGCTCCTCTTCCCGAGCGGCAACATCTACAACATGCT
CAACCTGTTGCTCGCAGTGGGCGCCGTCATTGAAGACTGTGTGCCTCGCT
TTGCCTGA
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