mRNA_M-pyrifera_M_contig128115.5650.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128115.5650.1
Unique NamemRNA_M-pyrifera_M_contig128115.5650.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: A0A351EPL9_9ACTN (AB hydrolase-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EPL9_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 5.880e-46
Identity = 85/166 (51.20%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    1 GRPFWYEGRAGLELSQLARTTVPLGPGRDRRVVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQSADGEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAPVRAHLPRSAPLRVPVETIRLLDKMPFGPSEDGAASTRYEADLFA 498
            GRP W E RA  E ++L  + + L P  + R+V+VTG+LAGAS+A  L  WL SAGY V +A  GRN   S     R+ + L   D +PSILIGHSRGGQQ RVA+ R P  VS LITLGAPVR HLPR   LR  +E +R+L + PFGP  D      YE DL +
Sbjct:   15 GRPVWNEARAPGERARLNASAIRLDPVANERIVLVTGYLAGASSASALQPWLLSAGYDVCVADVGRNAASSTHAAGRIAEALMDGD-KPSILIGHSRGGQQCRVASQRHPSRVSQLITLGAPVRMHLPRQIVLRSSIEALRVLARFPFGPQADPEGDAVYENDLLS 179          
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: A0A7Y2GKV7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKV7_9ACTN)

HSP 1 Score: 127 bits (320), Expect = 1.940e-33
Identity = 73/172 (42.44%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 GRPFWYEGRAGLELSQLARTTVPLGP----GRDRRVVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTL---QSADGEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAPVRAHLPRSAPLRVPVETIRLLDKMPFGPSEDGAASTRYEADLF 495
            GRP W E RA +E   L R+TV        GR R VV+VTG+L    +   L+ WL   GY V +A   RN   S     R+ +T+     A G P  LIGHSRGGQQ RV A R P  ++ LITLG+P+R HLPR   LR+ +E +RL  ++  G ++D  A   Y+++LF
Sbjct:   22 GRPVWNELRAPVERKNLRRSTVWADAEGLDGRGRPVVVVTGYLGTPDSVADLTDWLERGGYAVTVADMERNRRSSTWAAQRIAETIAERSEAVGRPVTLIGHSRGGQQCRVVANRSPEGLAQLITLGSPIRRHLPRQIALRLSIEALRLASRLGIGAADDVDADRAYQSELF 193          
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: UPI001BDC385C (hypothetical protein n=1 Tax=Nonomuraea sp. H16431 TaxID=2835864 RepID=UPI001BDC385C)

HSP 1 Score: 77.4 bits (189), Expect = 3.490e-14
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   25 RAGLELSQLARTTVPLGPGRDRRVVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQSAD---GEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAP----VRAHLP 384
            R  L+L+ +     P   G    VV+V G  +     +P+ RWL  AG R  +AP    L      V RV +TL  A    G P+ +I HSRGGQ +RVAA R P LVS L+TLG+P    V AH P
Sbjct:   17 RDWLDLADVPEYVTPPFHGDGLPVVLVGGLASTPMLFEPMRRWLDRAGCRPVVAPVRYGLDCGERTVARVLRTLAEATDRAGRPAAIIAHSRGGQFARVAAVRQPELVSGLVTLGSPLTDLVAAHRP 143          
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: A0A0Q6FHN6_9ACTN (Uncharacterized protein n=4 Tax=Marmoricola TaxID=86795 RepID=A0A0Q6FHN6_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-10
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   19 EGRAGLELSQLA---RTTVPLGPGRDRRVVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQSAD---GEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAPVRAHL 381
            EG  GLEL+  A   R    L  G    V+++ GFLAGAS+   L  +LRS GYRV     GRN+     +  R+++ L       G+P  ++G S GG  +R  A  +P  V  +IT+G P+R +L
Sbjct:   43 EGLTGLELAHSAASRRYLAGLPSGDGHPVLVLPGFLAGASSTGFLRGFLRSKGYRVYDWGQGRNMGVRQGLRGRLSERLDHISQRTGQPMSIVGWSAGGIYAREIARENPDRVRSVITMGTPMRGNL 169          
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: A0A0F9ETL7_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9ETL7_9ZZZZ)

HSP 1 Score: 60.8 bits (146), Expect = 5.690e-8
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 1
Query:    7 PF-WYEGRAGLELSQLARTTVPLGPGRDRR----VVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQSAD---GEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAPVRA 375
            PF W E    L+   L  + V LG G  R     VV+V GFL   +    +  WL   GY    +  G N     ++  R+ +T+Q      G P  +IGHS GG  +R  A   P +VSH+I+LGAP+R+
Sbjct:   26 PFIWREALWVLDWFSLRLSPVYLGFGVPRGDGSPVVLVPGFLTTDAYLVEMYFWLGRIGYAPYFSGIGINADCVHKLTQRLEKTVQDVHAETGRPVQIIGHSLGGSLARRLALGRPDIVSHIISLGAPIRS 156          
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Match: A0A837D4X9_9PSEU (AB hydrolase-1 domain-containing protein n=2 Tax=Saccharomonospora viridis TaxID=1852 RepID=A0A837D4X9_9PSEU)

HSP 1 Score: 57.8 bits (138), Expect = 5.830e-7
Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 1
Query:   73 GPGRDRRVVIVTGFLAGASTADPLSRWLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQS---ADGEPSILIGHSRGGQQSRVAAYRDPGLVSHLITLGAPV 369
            G G  + V++V GF  G  +   L  WL + GY      TG NL  +  +V+ +   L+      G   I+IG SRGG  SR+AA R P LV  L+ L +PV
Sbjct:   31 GDGTGQGVLLVPGFGFGDWSLRLLRSWLAARGYHPRGTRTGLNLGCTTRLVNHLEHRLEDLARTTGRRVIVIGQSRGGWLSRLAAVRRPDLVRGLVMLASPV 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128115.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A351EPL9_9ACTN5.880e-4651.20AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
A0A7Y2GKV7_9ACTN1.940e-3342.44Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
UPI001BDC385C3.490e-1440.94hypothetical protein n=1 Tax=Nonomuraea sp. H16431... [more]
A0A0Q6FHN6_9ACTN1.620e-1037.01Uncharacterized protein n=4 Tax=Marmoricola TaxID=... [more]
A0A0F9ETL7_9ZZZZ5.690e-835.11Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A837D4X9_9PSEU5.830e-737.25AB hydrolase-1 domain-containing protein n=2 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128115contigM-pyrifera_M_contig128115:2..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog469383.Cwoe_0784
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha beta
EggNOG OGs2I3SS@201174,COG1073@1,COG1073@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.4728653-CDS-M-pyrifera_M_contig128115:1..4991622815794.4728653-CDS-M-pyrifera_M_contig128115:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128115 2..499 +
1692277572.7716343-CDS-M-pyrifera_M_contig128115:1..4991692277572.7716343-CDS-M-pyrifera_M_contig128115:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128115 2..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128115.5650.1prot_M-pyrifera_M_contig128115.5650.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128115 2..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128115.5650.1

>prot_M-pyrifera_M_contig128115.5650.1 ID=prot_M-pyrifera_M_contig128115.5650.1|Name=mRNA_M-pyrifera_M_contig128115.5650.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
GRPFWYEGRAGLELSQLARTTVPLGPGRDRRVVIVTGFLAGASTADPLSR
WLRSAGYRVELAPTGRNLLGSGEMVDRVTQTLQSADGEPSILIGHSRGGQ
QSRVAAYRDPGLVSHLITLGAPVRAHLPRSAPLRVPVETIRLLDKMPFGP
SEDGAASTRYEADLFA
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mRNA from alignment at M-pyrifera_M_contig128115:2..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128115.5650.1 ID=mRNA_M-pyrifera_M_contig128115.5650.1|Name=mRNA_M-pyrifera_M_contig128115.5650.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128115:2..499+ (Macrocystis pyrifera P11B4 male)
GGCCGGCCGTTCTGGTACGAAGGACGAGCCGGTCTCGAGCTGTCGCAGCT GGCGCGAACCACCGTGCCGCTCGGCCCCGGACGTGATCGGCGAGTCGTCA TCGTCACGGGCTTTCTCGCCGGTGCGTCCACCGCCGATCCGCTCAGCCGT TGGCTGCGTTCGGCCGGCTACCGAGTCGAACTTGCCCCGACCGGCCGCAA TCTGCTCGGCAGCGGCGAGATGGTCGACCGTGTCACCCAGACGTTGCAGT CCGCCGACGGGGAGCCCTCGATCCTGATCGGTCACAGCCGCGGCGGTCAG CAGAGTCGGGTTGCCGCTTACCGCGACCCCGGACTCGTCAGTCATCTGAT CACGCTCGGGGCACCGGTTCGAGCGCATCTACCGCGTAGCGCTCCGCTTC GTGTACCCGTCGAGACGATCCGGCTGTTGGACAAGATGCCGTTCGGGCCG AGCGAAGACGGCGCAGCATCGACTCGTTACGAGGCTGATCTCTTCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128115:2..499+

>mRNA_M-pyrifera_M_contig128115.5650.1 ID=mRNA_M-pyrifera_M_contig128115.5650.1|Name=mRNA_M-pyrifera_M_contig128115.5650.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128115:2..499+ (Macrocystis pyrifera P11B4 male)
GGCCGGCCGTTCTGGTACGAAGGACGAGCCGGTCTCGAGCTGTCGCAGCT
GGCGCGAACCACCGTGCCGCTCGGCCCCGGACGTGATCGGCGAGTCGTCA
TCGTCACGGGCTTTCTCGCCGGTGCGTCCACCGCCGATCCGCTCAGCCGT
TGGCTGCGTTCGGCCGGCTACCGAGTCGAACTTGCCCCGACCGGCCGCAA
TCTGCTCGGCAGCGGCGAGATGGTCGACCGTGTCACCCAGACGTTGCAGT
CCGCCGACGGGGAGCCCTCGATCCTGATCGGTCACAGCCGCGGCGGTCAG
CAGAGTCGGGTTGCCGCTTACCGCGACCCCGGACTCGTCAGTCATCTGAT
CACGCTCGGGGCACCGGTTCGAGCGCATCTACCGCGTAGCGCTCCGCTTC
GTGTACCCGTCGAGACGATCCGGCTGTTGGACAAGATGCCGTTCGGGCCG
AGCGAAGACGGCGCAGCATCGACTCGTTACGAGGCTGATCTCTTCGCGGG
CCGGCCGTTCTGGTACGAAGGACGAGCCGGTCTCGAGCTGTCGCAGCTGG
CGCGAACCACCGTGCCGCTCGGCCCCGGACGTGATCGGCGAGTCGTCATC
GTCACGGGCTTTCTCGCCGGTGCGTCCACCGCCGATCCGCTCAGCCGTTG
GCTGCGTTCGGCCGGCTACCGAGTCGAACTTGCCCCGACCGGCCGCAATC
TGCTCGGCAGCGGCGAGATGGTCGACCGTGTCACCCAGACGTTGCAGTCC
GCCGACGGGGAGCCCTCGATCCTGATCGGTCACAGCCGCGGCGGTCAGCA
GAGTCGGGTTGCCGCTTACCGCGACCCCGGACTCGTCAGTCATCTGATCA
CGCTCGGGGCACCGGTTCGAGCGCATCTACCGCGTAGCGCTCCGCTTCGT
GTACCCGTCGAGACGATCCGGCTGTTGGACAAGATGCCGTTCGGGCCGAG
CGAAGACGGCGCAGCATCGACTCGTTACGAGGCTGATCTCTTCGCG
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