mRNA_M-pyrifera_M_contig128016.5640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128016.5640.1
Unique NamemRNA_M-pyrifera_M_contig128016.5640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI00135B5FC6 (tyrosine-type recombinase/integrase n=1 Tax=Dyadobacter sp. 3J3 TaxID=2606600 RepID=UPI00135B5FC6)

HSP 1 Score: 174 bits (440), Expect = 1.250e-51
Identity = 86/167 (51.50%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            +  P GKR+YAI+ IA RLG+RASDI GLKFEN+ W   +I   Q KTG+  +LPL A+VG AI+ Y+K GRP SNE YVF+S   PFR + +  +T+ V   F  +G+++  R HG HALRHSLA  +L + T + VI+ VLGH+ S S+ YYLRIDL S++ C++
Sbjct:   56 RARPSGKRNYAIVLIAARLGLRASDIAGLKFENLFWQQSIISICQYKTGRQLQLPLLAEVGEAIIEYLKYGRPISNEPYVFLSAGSPFRRMHTPGITSLVNRAFILSGVNIEHRHHGPHALRHSLANLLLEQSTILPVITEVLGHENSRSTKYYLRIDLTSMKQCML 222          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: A0A7X9PNB2_9BACT (Tyrosine-type recombinase/integrase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X9PNB2_9BACT)

HSP 1 Score: 176 bits (446), Expect = 1.430e-50
Identity = 88/167 (52.69%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            +   +GKR YAII +A RLG+RASDI  LKF+NI W  + I + Q KTG   ELPL ++VGNAI++Y+K  RP+S+E +VF+    PF  + +S+VT  VQN F K GI+   R HG HALRHSLA  +L  +T + VIS VLGH+ + S+ +YLRIDL SLR CV+
Sbjct:  230 RNNAVGKRDYAIILLAARLGLRASDIANLKFDNIFWEQNTISFYQYKTGNKLELPLLSEVGNAIVDYLKFSRPQSDEPFVFLCARSPFNPIHTSVVTKIVQNSFAKTGINTKYRRHGPHALRHSLADRLLENQTILPVISEVLGHENTESTRFYLRIDLTSLRQCVL 396          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI001F2F65BA (tyrosine-type recombinase/integrase n=1 Tax=Bacteroides uniformis TaxID=820 RepID=UPI001F2F65BA)

HSP 1 Score: 175 bits (444), Expect = 3.150e-50
Identity = 85/167 (50.90%), Postives = 117/167 (70.06%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            +G   GKR YA+I +A +LG+RASDIV LKFENI W   LI+ +Q KTGK   LPL  ++GNAI+NY+K+GRP S E Y+F+  N P+R ++  I+T  V ++ +KA ID + R HG HALRHS A ++L  +T + +IS  LGH  + S+MYYLRID+ +LR C +
Sbjct:  236 QGDAKGKRDYAMILLATKLGLRASDIVALKFENILWEQSLIKLSQQKTGKNISLPLLPEIGNAIINYLKHGRPVSEESYLFLQANAPYRRINPHILTGIVHSNIKKAKIDCTNRKHGPHALRHSFAGNLLKAETPMPIISEALGHSHTESTMYYLRIDITTLRQCAL 402          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI001E510591 (site-specific integrase n=2 Tax=Salinimicrobium marinum TaxID=680283 RepID=UPI001E510591)

HSP 1 Score: 172 bits (437), Expect = 6.010e-50
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSS-IVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            + +PIGKR+YAII +A RLG+RASDI  LKF N+ W    I   Q+KTGK   LPL  DVGNAI++Y+K GR KS E  +F+S   P+   +SS +VT  VQ  FRKAGI +  R  G H+LRHSL + ML E T + VIS VLGH+ + S+ YYLRIDL S++ C++
Sbjct:  159 RSSPIGKRNYAIILLAARLGLRASDIARLKFANLHWETSTIEIEQVKTGKELILPLLPDVGNAIIDYLKYGRAKSEEACIFLSERPPYSYFTSSNVVTHVVQRAFRKAGIIIKGRRFGPHSLRHSLGFRMLQESTMLPVISEVLGHKSTESTRYYLRIDLKSMQQCML 326          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: A0A7W7F511_9BACT (Integrase n=1 Tax=Parabacteroides faecis TaxID=1217282 RepID=A0A7W7F511_9BACT)

HSP 1 Score: 174 bits (442), Expect = 6.530e-50
Identity = 87/167 (52.10%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            + + +GKR YAII +A RLG+RASDI  LKFENI W+  L++ +Q KTGK  ELPL  ++GNAI++Y+K  RPKS E YVF+    PF  L S+ +T+ V  H   AGI++  R HGAHALRHSLA  +L ++T + +IS VLGH  + S+ YYLRID  SL+ C +
Sbjct:  237 RSSDLGKRDYAIILLAARLGLRASDICSLKFENIIWDKSLMQLDQNKTGKRIELPLLTELGNAIIDYLKLARPKSKETYVFLRAKAPFTRLYSAAITSIVHKHLVHAGINIENRRHGAHALRHSLAGVLLEQRTTLPIISEVLGHGSTESTKYYLRIDSTSLKQCAL 403          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI001FA826B3 (tyrosine-type recombinase/integrase n=1 Tax=Desulfotomaculum sp. OF05-3 TaxID=2305243 RepID=UPI001FA826B3)

HSP 1 Score: 167 bits (423), Expect = 6.560e-50
Identity = 79/166 (47.59%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    4 GTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            G P G+R YAII +  RLG+RASD+  L+FENI+W  + I + Q+KT K  ELPL  DVG +I+ Y+K GRP  N D++F+ H  P    ++S V + V  H  KAGI    R HGAHALRHSLA  +L  +  + VIS +LGH  + ++M YLR+D+  LR+C +
Sbjct:    4 GNPGGRRDYAIILLIARLGLRASDVANLRFENINWETNKISFYQVKTKKQIELPLLKDVGESIIEYMKYGRPTCNSDHIFVRHRAPIHEFTASAVGSTVHRHLLKAGIKTEGRHHGAHALRHSLAGRLLENRIPLPVISEILGHSSTETTMAYLRVDIEQLRNCAL 169          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: A0A2A5GTU6_9FLAO (Integrase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2A5GTU6_9FLAO)

HSP 1 Score: 174 bits (442), Expect = 6.960e-50
Identity = 86/168 (51.19%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRAL-SSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            + +PIGKR+YAII +A RLG+RASDI  LKF  + W+   I   Q+KTGK  ELP+  D+GNA+++Y+K GRP+S   +VF+    P+    +S +VT  VQ  +RKAGIDV  R  GAH+LRHSL + ML E T + VIS V GH  + S+ YYLRIDL S+R C++
Sbjct:  239 RSSPIGKRNYAIILLAARLGLRASDISRLKFTELHWDTSTIEIKQVKTGKELELPILPDIGNALIDYLKYGRPESESPFVFLIAKAPYAQFHTSQVVTHVVQRAYRKAGIDVKGRRFGAHSLRHSLGFRMLEESTALPVISEVFGHNSTESTRYYLRIDLKSMRQCML 406          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI001F3B0C5F (tyrosine-type recombinase/integrase n=1 Tax=Bacteroides thetaiotaomicron TaxID=818 RepID=UPI001F3B0C5F)

HSP 1 Score: 170 bits (430), Expect = 1.010e-49
Identity = 83/167 (49.70%), Postives = 115/167 (68.86%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            +G   GKR YA+I +A +LG+RASDIV LKFENI W   LI+ +Q KTGK Q LPL  ++GNAI+NY+K GRP S+E Y+F+  + P++ ++    T  V  + ++A ID + R HG HALRHS A ++L EKT + +IS  LGH  + S+MYYLRID  +L+ C +
Sbjct:   84 QGDSKGKRDYAMILLATKLGLRASDIVALKFENILWEESLIKLSQQKTGKVQSLPLLPEIGNAIINYMKYGRPISDESYLFLQAHAPYQGITPHSFTKIVDFNIKRAKIDCTNRKHGPHALRHSFADNLLKEKTPMPIISEALGHSYTESTMYYLRIDTITLKQCAL 250          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: UPI00131CA1CC (tyrosine-type recombinase/integrase n=1 Tax=Parabacteroides pacaensis TaxID=2086575 RepID=UPI00131CA1CC)

HSP 1 Score: 167 bits (423), Expect = 1.500e-49
Identity = 81/162 (50.00%), Postives = 114/162 (70.37%), Query Frame = 1
Query:   16 GKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            GKR YAI  +A RLG+R+SDI  LKFEN+DW+ ++I+ +Q +TGKY E+PL +DVGNAI+NY++ GRP S   +VF+    P+  +S  I +      FR +GI++  R HG+HALRHSLA  ML E T + VI+ +L H+ +NS+ YYLRID+ SL+ C +
Sbjct:   24 GKRDYAIFLLAARLGLRSSDIRLLKFENLDWDKNIIKLDQYRTGKYIEIPLLSDVGNAIVNYLQYGRPASESSFVFLEAIYPYATISQGI-SKIFSTIFRNSGINIEGRKHGSHALRHSLAVRMLKENTILSVITEILRHENTNSTKYYLRIDITSLKKCAL 184          
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Match: A0A501QBX8_9FLAO (Integrase n=1 Tax=Flavobacterium microcysteis TaxID=2596891 RepID=A0A501QBX8_9FLAO)

HSP 1 Score: 173 bits (438), Expect = 2.610e-49
Identity = 81/168 (48.21%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    1 KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGKYQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSS-SIVTTEVQNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNSSMYYLRIDLASLRHCVI 501
            + TP GKR+YAII +  RLG+R SD+  LKFEN+DWN++LI   Q KTGK   LPL  ++GNAI++Y+K GR +S+E  +F+S   P+ ++++ S +++ + + F+ +G+ +  R  G H+LRHSL Y +L E T + VIS +LGHQ + S+ YYLRIDL SLRHC++
Sbjct:  237 RSTPRGKRNYAIILLLARLGLRVSDVSNLKFENLDWNSNLISITQFKTGKNIVLPLLPEIGNAIIDYLKYGRAESDEKRIFLSCVSPYNSITTASAISSRIASVFKHSGVHIDGRKTGPHSLRHSLGYRLLQENTALPVISQILGHQNTQSTKYYLRIDLTSLRHCIL 404          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128016.5640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00135B5FC61.250e-5151.50tyrosine-type recombinase/integrase n=1 Tax=Dyadob... [more]
A0A7X9PNB2_9BACT1.430e-5052.69Tyrosine-type recombinase/integrase n=1 Tax=Bacter... [more]
UPI001F2F65BA3.150e-5050.90tyrosine-type recombinase/integrase n=1 Tax=Bacter... [more]
UPI001E5105916.010e-5052.98site-specific integrase n=2 Tax=Salinimicrobium ma... [more]
A0A7W7F511_9BACT6.530e-5052.10Integrase n=1 Tax=Parabacteroides faecis TaxID=121... [more]
UPI001FA826B36.560e-5047.59tyrosine-type recombinase/integrase n=1 Tax=Desulf... [more]
A0A2A5GTU6_9FLAO6.960e-5051.19Integrase n=1 Tax=Flavobacteriaceae bacterium TaxI... [more]
UPI001F3B0C5F1.010e-4949.70tyrosine-type recombinase/integrase n=1 Tax=Bacter... [more]
UPI00131CA1CC1.500e-4950.00tyrosine-type recombinase/integrase n=1 Tax=Paraba... [more]
A0A501QBX8_9FLAO2.610e-4948.21Integrase n=1 Tax=Flavobacterium microcysteis TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128016contigM-pyrifera_M_contig128016:2..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score173.7
Seed ortholog evalue7.2e-41
Seed eggNOG ortholog1236514.BAKL01000004_gene515
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phage integrase family
EggNOG OGs2FR05@200643,4AQMN@815,4NI2A@976,COG4974@1,COG4974@2
COG Functional cat.L
Best tax levelBacteroidaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.0424519-CDS-M-pyrifera_M_contig128016:1..5021622815794.0424519-CDS-M-pyrifera_M_contig128016:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128016 2..502 -
1692277572.60444-CDS-M-pyrifera_M_contig128016:1..5021692277572.60444-CDS-M-pyrifera_M_contig128016:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128016 2..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128016.5640.1prot_M-pyrifera_M_contig128016.5640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128016 2..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128016.5640.1

>prot_M-pyrifera_M_contig128016.5640.1 ID=prot_M-pyrifera_M_contig128016.5640.1|Name=mRNA_M-pyrifera_M_contig128016.5640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
KGTPIGKRSYAIIFIAFRLGMRASDIVGLKFENIDWNNDLIRYNQIKTGK
YQELPLFADVGNAILNYVKNGRPKSNEDYVFISHNVPFRALSSSIVTTEV
QNHFRKAGIDVSKRSHGAHALRHSLAYHMLMEKTGIHVISSVLGHQGSNS
SMYYLRIDLASLRHCVI
back to top

mRNA from alignment at M-pyrifera_M_contig128016:2..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128016.5640.1 ID=mRNA_M-pyrifera_M_contig128016.5640.1|Name=mRNA_M-pyrifera_M_contig128016.5640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig128016:2..502- (Macrocystis pyrifera P11B4 male)
AAAGGAACTCCTATAGGAAAACGCTCATACGCCATAATTTTCATTGCGTT TCGCCTTGGTATGCGGGCGTCTGATATAGTGGGGCTAAAATTTGAAAATA TCGACTGGAATAATGATCTAATAAGATATAATCAAATTAAAACTGGAAAA TATCAAGAACTCCCATTATTCGCTGATGTTGGTAACGCAATTCTGAATTA TGTCAAAAATGGACGACCAAAATCAAATGAAGATTATGTCTTTATTTCAC ACAATGTTCCTTTTCGCGCATTGTCCAGCTCAATAGTTACAACAGAAGTT CAAAATCATTTTAGAAAAGCAGGAATTGATGTTTCAAAAAGAAGCCATGG AGCACACGCTTTACGCCATTCACTTGCATATCATATGCTAATGGAAAAAA CTGGAATTCATGTGATTTCATCAGTACTCGGACACCAAGGGAGCAATTCT TCCATGTATTATTTGAGAATTGACTTGGCCTCATTAAGGCACTGCGTCAT T
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128016:2..502-

>mRNA_M-pyrifera_M_contig128016.5640.1 ID=mRNA_M-pyrifera_M_contig128016.5640.1|Name=mRNA_M-pyrifera_M_contig128016.5640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig128016:2..502- (Macrocystis pyrifera P11B4 male)
AAAGGAACTCCTATAGGAAAACGCTCATACGCCATAATTTTCATTGCGTT
TCGCCTTGGTATGCGGGCGTCTGATATAGTGGGGCTAAAATTTGAAAATA
TCGACTGGAATAATGATCTAATAAGATATAATCAAATTAAAACTGGAAAA
TATCAAGAACTCCCATTATTCGCTGATGTTGGTAACGCAATTCTGAATTA
TGTCAAAAATGGACGACCAAAATCAAATGAAGATTATGTCTTTATTTCAC
ACAATGTTCCTTTTCGCGCATTGTCCAGCTCAATAGTTACAACAGAAGTT
CAAAATCATTTTAGAAAAGCAGGAATTGATGTTTCAAAAAGAAGCCATGG
AGCACACGCTTTACGCCATTCACTTGCATATCATATGCTAATGGAAAAAA
CTGGAATTCATGTGATTTCATCAGTACTCGGACACCAAGGGAGCAATTCT
TCCATGTATTATTTGAGAATTGACTTGGCCTCATTAAGGCACTGCGTCAT
TAAAGGAACTCCTATAGGAAAACGCTCATACGCCATAATTTTCATTGCGT
TTCGCCTTGGTATGCGGGCGTCTGATATAGTGGGGCTAAAATTTGAAAAT
ATCGACTGGAATAATGATCTAATAAGATATAATCAAATTAAAACTGGAAA
ATATCAAGAACTCCCATTATTCGCTGATGTTGGTAACGCAATTCTGAATT
ATGTCAAAAATGGACGACCAAAATCAAATGAAGATTATGTCTTTATTTCA
CACAATGTTCCTTTTCGCGCATTGTCCAGCTCAATAGTTACAACAGAAGT
TCAAAATCATTTTAGAAAAGCAGGAATTGATGTTTCAAAAAGAAGCCATG
GAGCACACGCTTTACGCCATTCACTTGCATATCATATGCTAATGGAAAAA
ACTGGAATTCATGTGATTTCATCAGTACTCGGACACCAAGGGAGCAATTC
TTCCATGTATTATTTGAGAATTGACTTGGCCTCATTAAGGCACTGCGTCA
TT
back to top