mRNA_M-pyrifera_M_contig127896.5618.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127896.5618.1
Unique NamemRNA_M-pyrifera_M_contig127896.5618.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A2V0P2X2_9CHLO (MYND-type domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2X2_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 1.020e-37
Identity = 67/126 (53.17%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  128 DEDMLRAYPLSPRVPTTNAECEALVAA-AQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGSITSGFSGTADALWRGLNSYNF 502
            DEDML AYPL P    +NA      A  A +CPLC KS+ +  MT T+CC   +CD+  EY LMS+SR+FC RSH RYTLCG HG E +CD + DWREC  C+      F    D LWRGLN+YNF
Sbjct:   81 DEDMLAAYPLRPSRLDSNARVRRPSAEEAPQCPLCLKSNGEVAMTRTQCCGNALCDTSGEYVLMSYSRDFCERSHDRYTLCGYHGEERECDKSKDWRECPRCL-----SFGQLPDRLWRGLNAYNF 201          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A835XGG8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XGG8_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 1.090e-32
Identity = 59/128 (46.09%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  137 MLRAYPLSPRVPTTNAECEALVAAA------QKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGSITSGFSGTADALWRGLNSYNF 502
            ML  +PL P  P   ++  A   A        +C LC K + +  +  T CC Q VCD+ +EYQLMS+SREFC RSH RYTLCG HG+E  CD   DWR C  C G         AD +WRGLN YN+
Sbjct:    1 MLARFPLRPHAPLCWSDPRAASRAGGPPPAGARCALCNKGAGEVRLMHTPCCAQVVCDNAEEYQLMSYSREFCSRSHERYTLCGYHGLERHCDRGPDWRHCPACAGRDGRPGRDEADRVWRGLNPYNY 128          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A6A7FXJ7_9CRUS (MYND-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FXJ7_9CRUS)

HSP 1 Score: 122 bits (305), Expect = 3.570e-31
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  128 DEDMLRAYPLSPRVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGSITSGFSGTADALWRGLNSYNF 502
            D++ML  +PL+    ++   C+          +C  +SK   +  T CC   +CD+   YQ+MS+SREFC RSHSRYTLCG HGVEP+CD + DWR+C  C+ S     S  AD +WRGLN YNF
Sbjct:  101 DQEMLAKFPLNGSGGSSTRSCD----------IC--TSKSNPLMETECCGNVLCDTAGRYQMMSYSREFCSRSHSRYTLCGHHGVEPECDESVDWRDCSGCLES----HSDLADTMWRGLNGYNF 209          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A150G0C3_GONPE (MYND-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0C3_GONPE)

HSP 1 Score: 120 bits (300), Expect = 2.930e-30
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  125 NDEDMLRAYPLSPRV----PTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGS--ITSGFSGTADALWRGLNSYN 499
            NDE ML  +PL   +    P++ A  +A+ A A  C LCGK+S +  +    CC + VCD+E  Y+  +FSR+FC RSH+RYTLCG HGVE +C    DWR C  C  +   +SG S T+D LWRGLN+YN
Sbjct:   71 NDEQMLERFPLGSALGHNTPSSAARPDAIPAGAC-CGLCGKTSAEETLGRAPCCGEVVCDNELRYRPGTFSRDFCLRSHARYTLCGHHGVERECARGLDWRVCPGCATAPAASSGASTTSDRLWRGLNAYN 200          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A835SQA9_CHLIN (MYND-type domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SQA9_CHLIN)

HSP 1 Score: 98.2 bits (243), Expect = 4.690e-22
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  224 LCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGSITSGFS-GTADALWRGLNSYNF 502
            +CG  +K   +T T CC QPVC++   Y++ ++SR FC RSH RYTLCG HG E  C+   DWR+C  C     +G S  TA+ LW  LN+YNF
Sbjct:  101 VCGLCAKGGALTTTSCCQQPVCNNSHRYRIGTYSRNFCLRSHDRYTLCGSHGQE-GCNTRRDWRDCNKCTREPRNGGSYDTANRLWLDLNTYNF 193          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A7S3VGF5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGF5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.490e-17
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  140 LRAYPLS--PRVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYC 430
            L  YP+   P   +TN+      A   KC +C  SS +  +T T CC  PVCD+  EYQ+MS+SR+FC RSH RYT C  H  E   +   DWR+C  C
Sbjct:  191 LEKYPIGCFPVPSSTNSTEVKAKAGGAKCFVCHSSSLEVDITYTECCNLPVCDNSHEYQMMSYSRDFCQRSHDRYTSCASHCQE---EHKGDWRDCVEC 286          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A383W5K5_TETOB (MYND-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W5K5_TETOB)

HSP 1 Score: 81.3 bits (199), Expect = 7.390e-17
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 2
Query:  128 DEDMLRAYPLSPRVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCG 370
            DEDML A+PL        +     V A   CP+CGK + Q  +T T CC Q VCD+   YQ+ SFSR+ CPRS  RYTLCG
Sbjct:   36 DEDMLAAFPLQSH-RAARSSTPPPVPAGASCPICGKGAGQAPLTRTPCCQQLVCDTNARYQIGSFSRDICPRSLQRYTLCG 115          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A835YVW1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVW1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.750e-15
Identity = 46/138 (33.33%), Postives = 62/138 (44.93%), Query Frame = 2
Query:  128 DEDMLRAYPLSPRVPTTNAECEALVAAAQ------------KCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCG-QHGVEPDCDAAADWRECKYCIGSITSGFSGTADALWRGLNSYNF 502
            DE    A  L P     +A+   L   ++            +C +CG++     ++LT CC   +C+ + EY+L S+SREFC RSH RYT CG  HG       A DWR C+ C            D  W   N YNF
Sbjct:   35 DEAKESANTLQPAAAAADADATTLFLYSEGTLLPELRPNPPECGICGRTEP---LSLTPCCQNLICNRQHEYELFSYSREFCDRSHDRYTACGFHHGA----GHAGDWRTCERCAADFN-------DDYWYSNNGYNF 158          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: T0QN56_SAPDV (MYND-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QN56_SAPDV)

HSP 1 Score: 78.2 bits (191), Expect = 4.030e-14
Identity = 47/134 (35.07%), Postives = 62/134 (46.27%), Query Frame = 2
Query:  125 NDEDMLRAYPLSP-RVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKY--------CIGSITSGFSGTADALWRGLNSYN 499
            N+ D L  YP+    V TT+ E          C +CG    +  + +T+CC   VCD+E EYQ+MS+SR  C RSH+RYT CG H  E       DWR C +        C      G  G +   W   N +N
Sbjct:  145 NEADELTKYPIGCFPVETTDLET---------CFICGAGENEVNLGVTQCCGLTVCDNEHEYQMMSYSRTHCMRSHNRYTTCGSHANEGH--RHNDWRTCPHVDCAKQRECPDDERGGGGGRS---WYSTNGFN 264          
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Match: A0A7S2RFB8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFB8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.330e-13
Identity = 42/123 (34.15%), Postives = 57/123 (46.34%), Query Frame = 2
Query:  131 EDMLRAYPLSPRVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPVCDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIGSITSGFSGTADALWRGLNSYN 499
            E  L+ YPL         + E L      C +CG    +  +T TRCC   VCD+  EYQ+ S+SR+FC RSH  YT+C  H  E     + DWR C+ C   +     G     +   N +N
Sbjct:  181 EKQLKKYPLGCFPLPDPPKDETL-----SCFICGAGPDEVPLTFTRCCNAAVCDNTSEYQVFSYSRDFCHRSHCFYTVCASHFEEGH---SGDWRTCQDC--KVARAEEGEGSRSFSSTNGFN 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127896.5618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2V0P2X2_9CHLO1.020e-3753.17MYND-type domain-containing protein n=1 Tax=Raphid... [more]
A0A835XGG8_9CHLO1.090e-3246.09Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A6A7FXJ7_9CRUS3.570e-3145.60MYND-type domain-containing protein (Fragment) n=1... [more]
A0A150G0C3_GONPE2.930e-3047.33MYND-type domain-containing protein n=1 Tax=Gonium... [more]
A0A835SQA9_CHLIN4.690e-2247.87MYND-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A7S3VGF5_9STRA6.490e-1743.43Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A383W5K5_TETOB7.390e-1749.38MYND-type domain-containing protein n=1 Tax=Tetrad... [more]
A0A835YVW1_9STRA6.750e-1533.33MYND-type domain-containing protein n=1 Tax=Tribon... [more]
T0QN56_SAPDV4.030e-1435.07MYND-type domain-containing protein n=2 Tax=Saprol... [more]
A0A7S2RFB8_9STRA1.330e-1334.15Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127896contigM-pyrifera_M_contig127896:1..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4e-17
Seed eggNOG ortholog28583.AMAG_19594T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2D6A5@1,2T1AW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size502
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.9362705-CDS-M-pyrifera_M_contig127896:0..3661622815792.9362705-CDS-M-pyrifera_M_contig127896:0..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127896 1..366 -
1692277572.0574648-CDS-M-pyrifera_M_contig127896:0..3661692277572.0574648-CDS-M-pyrifera_M_contig127896:0..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127896 1..366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.948613-UTR-M-pyrifera_M_contig127896:366..5021622815792.948613-UTR-M-pyrifera_M_contig127896:366..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127896 367..502 -
1692277572.0737941-UTR-M-pyrifera_M_contig127896:366..5021692277572.0737941-UTR-M-pyrifera_M_contig127896:366..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127896 367..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127896.5618.1prot_M-pyrifera_M_contig127896.5618.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127896 1..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127896.5618.1

>prot_M-pyrifera_M_contig127896.5618.1 ID=prot_M-pyrifera_M_contig127896.5618.1|Name=mRNA_M-pyrifera_M_contig127896.5618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLRAYPLSPRVPTTNAECEALVAAAQKCPLCGKSSKQTGMTLTRCCFQPV
CDSEDEYQLMSFSREFCPRSHSRYTLCGQHGVEPDCDAAADWRECKYCIG
SITSGFSGTADALWRGLNSYNF
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mRNA from alignment at M-pyrifera_M_contig127896:1..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127896.5618.1 ID=mRNA_M-pyrifera_M_contig127896.5618.1|Name=mRNA_M-pyrifera_M_contig127896.5618.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=502bp|location=Sequence derived from alignment at M-pyrifera_M_contig127896:1..502- (Macrocystis pyrifera P11B4 male)
ACTCTCAAGCAGTGTTCTGCTTGCCACATGGTACAGTACTGTGGCAGTGC TCACCAAAAGGCAAATTGGGCGAAGCACAAGAAGGACTGTGTGGTATTTA AGAGGCTGGGGCTGAGGGCACTGTAACGACGAGGACATGCTCCGCGCCTA CCCTCTTTCCCCAAGAGTCCCAACCACCAACGCAGAGTGCGAAGCGCTCG TCGCTGCGGCACAGAAATGCCCTCTTTGCGGCAAGTCGAGCAAGCAGACC GGAATGACTTTGACTCGATGCTGTTTCCAGCCTGTTTGCGACTCCGAGGA CGAATACCAGCTCATGAGCTTCAGCAGGGAGTTTTGCCCAAGATCACACA GCCGCTACACTCTTTGTGGCCAGCACGGAGTCGAGCCAGATTGTGACGCT GCAGCTGACTGGCGTGAATGCAAATACTGCATTGGATCCATCACTTCCGG CTTCTCCGGTACGGCAGATGCCCTCTGGAGGGGCCTCAACTCCTACAACT TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127896:1..502-

>mRNA_M-pyrifera_M_contig127896.5618.1 ID=mRNA_M-pyrifera_M_contig127896.5618.1|Name=mRNA_M-pyrifera_M_contig127896.5618.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig127896:1..502- (Macrocystis pyrifera P11B4 male)
ATGCTCCGCGCCTACCCTCTTTCCCCAAGAGTCCCAACCACCAACGCAGA
GTGCGAAGCGCTCGTCGCTGCGGCACAGAAATGCCCTCTTTGCGGCAAGT
CGAGCAAGCAGACCGGAATGACTTTGACTCGATGCTGTTTCCAGCCTGTT
TGCGACTCCGAGGACGAATACCAGCTCATGAGCTTCAGCAGGGAGTTTTG
CCCAAGATCACACAGCCGCTACACTCTTTGTGGCCAGCACGGAGTCGAGC
CAGATTGTGACGCTGCAGCTGACTGGCGTGAATGCAAATACTGCATTGGA
TCCATCACTTCCGGCTTCTCCGGTACGGCAGATGCCCTCTGGAGGGGCCT
CAACTCCTACAACTTCATGCTCCGCGCCTACCCTCTTTCCCCAAGAGTCC
CAACCACCAACGCAGAGTGCGAAGCGCTCGTCGCTGCGGCACAGAAATGC
CCTCTTTGCGGCAAGTCGAGCAAGCAGACCGGAATGACTTTGACTCGATG
CTGTTTCCAGCCTGTTTGCGACTCCGAGGACGAATACCAGCTCATGAGCT
TCAGCAGGGAGTTTTGCCCAAGATCACACAGCCGCTACACTCTTTGTGGC
CAGCACGGAGTCGAGCCAGATTGTGACGCTGCAGCTGACTGGCGTGAATG
CAAATACTGCATTGGATCCATCACTTCCGGCTTCTCCGGTACGGCAGATG
CCCTCTGGAGGGGCCTCAACTCCTACAACTTC
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