mRNA_M-pyrifera_M_contig127790.5605.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127790.5605.1
Unique NamemRNA_M-pyrifera_M_contig127790.5605.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A6I6AI36_9PLAN (Type I-B CRISPR-associated protein Cas7/Cst2/DevR n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AI36_9PLAN)

HSP 1 Score: 295 bits (756), Expect = 6.200e-99
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIEAQP 447
            PVPYGCE+HATRYQYGMSLTPESLREKSRAASAI+ALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELI GVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIEAQP
Sbjct:  160 PVPYGCEVHATRYQYGMSLTPESLREKSRAASAIDALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELIGGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIEAQP 308          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A518FLP9_9PLAN (CRISPR-associated protein Cas7/Cst2/DevR n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FLP9_9PLAN)

HSP 1 Score: 239 bits (609), Expect = 1.270e-76
Identity = 115/147 (78.23%), Postives = 134/147 (91.16%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIEA 441
            PVPYG E+HATRYQ+G SLTPESLREKSRAA AIEALCHLG+VAGNQGRFL+DFSP+AVVFRLTHDPAPRILYCFESND GK+V VDQLL RLD+GDI+ EELICGVSD ES L QQL+NRG+E +GVKAAC+S+++RM++ + +EA
Sbjct:  160 PVPYGSEVHATRYQFGTSLTPESLREKSRAAKAIEALCHLGSVAGNQGRFLFDFSPEAVVFRLTHDPAPRILYCFESNDFGKSVCVDQLLTRLDTGDIKPEELICGVSDRESALAQQLQNRGIEPVGVKAACSSLINRMTQALEVEA 306          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A7C4V951_9BACT (Type I-B CRISPR-associated protein Cas7/Cst2/DevR n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4V951_9BACT)

HSP 1 Score: 187 bits (475), Expect = 1.950e-56
Identity = 89/146 (60.96%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIE 438
            PVPYG E+HATRYQYG++LTPE LR+K+RAA AIEALC+LGTVAGN GRFL+DFSPDAVVFR+T DPAPR+LY F + D GKT+  + LL +L++ D+  EELI GVSD +S L +     G+  +GVKAACA  + R+++ +GI+
Sbjct:  156 PVPYGTEVHATRYQYGIALTPERLRDKTRAAKAIEALCNLGTVAGNHGRFLFDFSPDAVVFRITQDPAPRLLYSFGTKDEGKTLHAENLLRKLEANDVTKEELILGVSDLQSELARSFAAVGVSPLGVKAACAEAVKRINQELGIK 301          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A5K7X5I9_9BACT (CRISPR-associated negative autoregulator Cas7/Cst2 n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7X5I9_9BACT)

HSP 1 Score: 183 bits (464), Expect = 8.880e-55
Identity = 87/146 (59.59%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIE 438
            PVPYG E+HATRYQYG++LTPE LR+KSRAA AI+ALC+LGTVAGN GRFL+DFSPD VV R+T DPAPR+LY F++ D+GKT++ D L+ R+DS DI  +ELI G  D +S L   LK RG+   GVK AC   ++R++  + I+
Sbjct:  156 PVPYGTEVHATRYQYGIALTPERLRDKSRAAKAIDALCNLGTVAGNHGRFLFDFSPDVVVLRITSDPAPRLLYSFDTTDNGKTLNADALVKRIDSKDINPKELILGAGDLDSKLVASLKARGVAVFGVKRACEEAVNRINAELKIK 301          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A225DDL8_9BACT (CRISPR-associated autoregulator DevR family n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225DDL8_9BACT)

HSP 1 Score: 177 bits (449), Expect = 1.750e-52
Identity = 87/146 (59.59%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIE 438
            PVPYG E+HATRYQYG++LTP+ LR+K+RAA AI+ALC+LGTVAGN GRFL+DFSPDAVV R+T DPAPR+LYCF++ D GKTV   +LL RL + D+  +ELI GVSD E  L   LK R +   GVK AC   + R++  + I+
Sbjct:  159 PVPYGTEVHATRYQYGIALTPDRLRDKTRAAKAIDALCNLGTVAGNHGRFLFDFSPDAVVLRVTQDPAPRLLYCFDTTDDGKTVVSPKLLQRLAAEDLDPKELIVGVSDLECKLAADLKARQVPVYGVKKACEEAVKRITAELKIK 304          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: UPI001EE8EDD8 (type I-B CRISPR-associated protein Cas7/Cst2/DevR n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE8EDD8)

HSP 1 Score: 164 bits (415), Expect = 2.330e-47
Identity = 76/146 (52.05%), Postives = 108/146 (73.97%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGL-ETMGVKAACASVLDRMSKLIGI 435
            PVPYG E+HATRYQ+G++LTPE LR+KSRAA A+EA+  L TVAGN GRFL+DFSP+A++ R+T DPAPR+LYCF S+D G TV+   L+ R++ GD+  +EL+ GVSD +S L Q L++ G+ +  GV+ A     + + + + +
Sbjct:  161 PVPYGTEVHATRYQFGLALTPERLRDKSRAAKALEAVGSLRTVAGNHGRFLFDFSPEAIIIRITRDPAPRLLYCFNSDDSGATVTASALIKRIEVGDVLADELVVGVSDLDSELSQSLRDNGVSQVSGVRGAIQIACESLQQSLNV 306          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A7V5UJF3_9PLAN (Type I-B CRISPR-associated protein Cas7/Cst2/DevR n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V5UJF3_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 1.040e-45
Identity = 80/147 (54.42%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETM--GVKAACASVLDRMSKLIGI 435
            PVPYG E+HATRYQ+G++LTP+ LR+ SRAA AI A+  L +VAGN GRFL+DFSP+A+V R+T DPAPR+LYCFES+D GKTVS   L+AR+ SGDI   ELI G +       +QL+  G+E++  GVK+A  +  +R++  +G+
Sbjct:  158 PVPYGTELHATRYQFGLALTPQRLRDPSRAAKAIRAVGSLRSVAGNHGRFLFDFSPEAIVVRITDDPAPRLLYCFESDDDGKTVSAPSLVARVRSGDIAPSELIVGGAIASGETGEQLRECGVESISEGVKSAIDAACERINNQLGV 304          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A3L7UQT0_9BACT (Type I-B CRISPR-associated protein Cas7/Cst2/DevR n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7UQT0_9BACT)

HSP 1 Score: 158 bits (400), Expect = 3.570e-45
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETMGVKAA 393
            PVPYG E+HATRYQYG+++TPE LR+K RA  A++ +  L TVAGN GRFL+DFSP+ +VFR+T DPAPR+LYCF++ D GKTVS   LL R+ +GD+  EELI G  D +  L ++ K   +  +GVKAA
Sbjct:  157 PVPYGTEVHATRYQYGIAMTPERLRQKERAIVALQGISSLRTVAGNHGRFLFDFSPEVIVFRITDDPAPRLLYCFDTPDDGKTVSALALLKRIQNGDVAPEELIVGTGDVDDSLSREFKKLKVAVLGVKAA 287          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: UPI001423A624 (type I-B CRISPR-associated protein Cas7/Cst2/DevR n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001423A624)

HSP 1 Score: 158 bits (399), Expect = 5.720e-45
Identity = 78/147 (53.06%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGL-ETMGVKAACASVLDRMSKLIGIE 438
            PVPY  E+HATRYQYG+++TP +L++ SRAA A+EA+  LGTVAGN  RFL+DF+PDA+V RLT+DPAPR+LYCFE  + GKTV V  L  ++++GDI+ +ELI GVSD  +PL   L+  G+ E  GV+ A      R+++  G++
Sbjct:  158 PVPYMAEIHATRYQYGLAMTPAALQKPSRAAKALEAVGELGTVAGNHARFLFDFAPDAIVIRLTNDPAPRLLYCFEPAEGGKTVRVSPLTKKMEAGDIRPDELIVGVSDLNAPLVDSLRIAGVTEIHGVRNAVELAARRINEHSGVK 304          
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Match: A0A5C6E2H7_9BACT (CRISPR-associated protein Cas7/Cst2/DevR n=2 Tax=Novipirellula TaxID=2795426 RepID=A0A5C6E2H7_9BACT)

HSP 1 Score: 154 bits (389), Expect = 1.670e-43
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = 1
Query:    1 PVPYGCEMHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPDAVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGVSDFESPLYQQLKNRGLETM-GVKAACASVLDRMSKL 426
            PVPYG E+HATRYQYG+++TP+ LR+  RAA A++A+ +L TVAGN GRFL+DFSP A+VFR+T DPAPR+LYCF + D G T+S D+L+ R+ SGDI   ELI G     +   + L   G +   G+KAA  +V DR++K+
Sbjct:  158 PVPYGAEIHATRYQYGIAMTPDRLRQSDRAAKALQAIANLRTVAGNHGRFLFDFSPAAIVFRVTEDPAPRLLYCFGTPDAGHTLSADELVRRVKSGDINASELIVGGELATTDSGKALAELGADVKDGIKAATQAVCDRIAKV 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127790.5605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AI36_9PLAN6.200e-9997.99Type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
A0A518FLP9_9PLAN1.270e-7678.23CRISPR-associated protein Cas7/Cst2/DevR n=2 Tax=G... [more]
A0A7C4V951_9BACT1.950e-5660.96Type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
A0A5K7X5I9_9BACT8.880e-5559.59CRISPR-associated negative autoregulator Cas7/Cst2... [more]
A0A225DDL8_9BACT1.750e-5259.59CRISPR-associated autoregulator DevR family n=1 Ta... [more]
UPI001EE8EDD82.330e-4752.05type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
A0A7V5UJF3_9PLAN1.040e-4554.42Type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
A0A3L7UQT0_9BACT3.570e-4556.49Type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
UPI001423A6245.720e-4553.06type I-B CRISPR-associated protein Cas7/Cst2/DevR ... [more]
A0A5C6E2H7_9BACT1.670e-4353.15CRISPR-associated protein Cas7/Cst2/DevR n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127790contigM-pyrifera_M_contig127790:53..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.3
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog886293.Sinac_0369
Preferred namedevR
KEGG koko:K19075
Hectar predicted targeting categoryother localisation
EggNOG free text desc.crispr-associated protein
EggNOG OGsCOG1857@1,COG1857@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02048
Exons1
Model size450
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.3887117-CDS-M-pyrifera_M_contig127790:52..4811622815792.3887117-CDS-M-pyrifera_M_contig127790:52..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127790 53..481 -
1692277571.795898-CDS-M-pyrifera_M_contig127790:52..4811692277571.795898-CDS-M-pyrifera_M_contig127790:52..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127790 53..481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.399056-UTR-M-pyrifera_M_contig127790:481..5021622815792.399056-UTR-M-pyrifera_M_contig127790:481..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127790 482..502 -
1692277571.8113518-UTR-M-pyrifera_M_contig127790:481..5021692277571.8113518-UTR-M-pyrifera_M_contig127790:481..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127790 482..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127790.5605.1prot_M-pyrifera_M_contig127790.5605.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127790 53..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127790.5605.1

>prot_M-pyrifera_M_contig127790.5605.1 ID=prot_M-pyrifera_M_contig127790.5605.1|Name=mRNA_M-pyrifera_M_contig127790.5605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MHATRYQYGMSLTPESLREKSRAASAIEALCHLGTVAGNQGRFLYDFSPD
AVVFRLTHDPAPRILYCFESNDHGKTVSVDQLLARLDSGDIQIEELICGV
SDFESPLYQQLKNRGLETMGVKAACASVLDRMSKLIGIEAQP*
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mRNA from alignment at M-pyrifera_M_contig127790:53..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127790.5605.1 ID=mRNA_M-pyrifera_M_contig127790.5605.1|Name=mRNA_M-pyrifera_M_contig127790.5605.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig127790:53..502- (Macrocystis pyrifera P11B4 male)
CCGGTTCCTTATGGTTGTGAAATGCATGCGACGCGATATCAGTACGGCAT GTCACTGACACCGGAAAGTCTACGGGAAAAGTCCAGGGCAGCCTCCGCCA TTGAAGCATTGTGTCACCTGGGGACAGTGGCAGGTAATCAAGGTCGATTC TTATATGACTTCTCTCCCGATGCCGTTGTATTCCGGTTGACCCACGATCC GGCACCTCGAATTCTTTATTGTTTCGAGTCGAACGATCACGGGAAGACTG TTTCCGTTGATCAGCTCCTTGCACGCCTGGATTCTGGCGATATTCAGATT GAAGAATTGATATGTGGCGTCAGTGATTTCGAATCTCCCCTGTATCAACA ATTGAAAAACAGGGGCCTCGAAACGATGGGAGTGAAAGCTGCGTGTGCCT CCGTGCTTGATAGGATGTCAAAGCTAATAGGAATCGAGGCCCAACCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127790:53..502-

>mRNA_M-pyrifera_M_contig127790.5605.1 ID=mRNA_M-pyrifera_M_contig127790.5605.1|Name=mRNA_M-pyrifera_M_contig127790.5605.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig127790:53..502- (Macrocystis pyrifera P11B4 male)
ATGCATGCGACGCGATATCAGTACGGCATGTCACTGACACCGGAAAGTCT
ACGGGAAAAGTCCAGGGCAGCCTCCGCCATTGAAGCATTGTGTCACCTGG
GGACAGTGGCAGGTAATCAAGGTCGATTCTTATATGACTTCTCTCCCGAT
GCCGTTGTATTCCGGTTGACCCACGATCCGGCACCTCGAATTCTTTATTG
TTTCGAGTCGAACGATCACGGGAAGACTGTTTCCGTTGATCAGCTCCTTG
CACGCCTGGATTCTGGCGATATTCAGATTGAAGAATTGATATGTGGCGTC
AGTGATTTCGAATCTCCCCTGTATCAACAATTGAAAAACAGGGGCCTCGA
AACGATGGGAGTGAAAGCTGCGTGTGCCTCCGTGCTTGATAGGATGTCAA
AGCTAATAGGAATCGAGGCCCAACCGTGAATGCATGCGACGCGATATCAG
TACGGCATGTCACTGACACCGGAAAGTCTACGGGAAAAGTCCAGGGCAGC
CTCCGCCATTGAAGCATTGTGTCACCTGGGGACAGTGGCAGGTAATCAAG
GTCGATTCTTATATGACTTCTCTCCCGATGCCGTTGTATTCCGGTTGACC
CACGATCCGGCACCTCGAATTCTTTATTGTTTCGAGTCGAACGATCACGG
GAAGACTGTTTCCGTTGATCAGCTCCTTGCACGCCTGGATTCTGGCGATA
TTCAGATTGAAGAATTGATATGTGGCGTCAGTGATTTCGAATCTCCCCTG
TATCAACAATTGAAAAACAGGGGCCTCGAAACGATGGGAGTGAAAGCTGC
GTGTGCCTCCGTGCTTGATAGGATGTCAAAGCTAATAGGAATCGAGGCCC
AACCGTGA
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