mRNA_M-pyrifera_M_contig127370.5513.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127370.5513.1
Unique NamemRNA_M-pyrifera_M_contig127370.5513.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127370.5513.1 vs. uniprot
Match: A0A2E7K7R4_9PLAN (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K7R4_9PLAN)

HSP 1 Score: 252 bits (643), Expect = 5.510e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 MPMRDGSCLKVRSRIRKRLYFIKGDFSSGMGQIASLLIGRFPILQRIRFSFLFRGWHYRRCRCCGIKSDTEIQTDFLVSSTKAEAAMEANPLLEILMQLRFTAGLSEEDQHKLAAIAQKRKFRAG 375
            MPMRDGSCLKVRSRIRKRLYFIKGDFSSGMGQIASLLIGRFPILQRIRFSFLFRGWHYRRCRCCGIKSDTEIQTDFLVSSTKAEAAMEANPLLEILMQLRFTAGLSEEDQHKLAAIAQKRKFRAG
Sbjct:    1 MPMRDGSCLKVRSRIRKRLYFIKGDFSSGMGQIASLLIGRFPILQRIRFSFLFRGWHYRRCRCCGIKSDTEIQTDFLVSSTKAEAAMEANPLLEILMQLRFTAGLSEEDQHKLAAIAQKRKFRAG 125
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BLAST of mRNA_M-pyrifera_M_contig127370.5513.1 vs. uniprot
Match: A0A517WG96_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WG96_9PLAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-23
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 3 
Query:    3 ANAGWFLSEGSKSNQEASLFYQRRFFIWYGTNSFFADREIPDTTTDPFFVSLPRLAL 173
            AN GWFL E SKSNQE SLFYQRR FIWYGTNS F DREIPDT+ D FFV LP LAL
Sbjct:   36 ANTGWFLFEDSKSNQERSLFYQRRIFIWYGTNSLFTDREIPDTSADLFFVFLPGLAL 92
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BLAST of mRNA_M-pyrifera_M_contig127370.5513.1 vs. uniprot
Match: A0A517WG46_9PLAN (cAMP receptor protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WG46_9PLAN)

HSP 1 Score: 67.8 bits (164), Expect = 1.140e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  259 MEANPLLEILMQLRFTAGLSEEDQHKLAAIAQKRKFRAG 375
            MEANPLLEILM+LRFTAGLS  DQHKLAAIA++RKFRAG
Sbjct:    1 MEANPLLEILMKLRFTAGLSVADQHKLAAIARQRKFRAG 39
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BLAST of mRNA_M-pyrifera_M_contig127370.5513.1 vs. uniprot
Match: A0A518A9L0_9PLAN (Transcriptional activator FtrB n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A9L0_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-6
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  259 MEANPLLEILMQLRFTAGLSEEDQHKLAAIAQKRKFRAG 375
            MEAN L EILM+LRFTAGLSE DQ KLAAI++ ++F AG
Sbjct:    1 MEANQLQEILMELRFTAGLSEGDQQKLAAISRLKEFPAG 39
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127370.5513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7K7R4_9PLAN5.510e-83100.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A517WG96_9PLAN2.580e-2378.95Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517WG46_9PLAN1.140e-1187.18cAMP receptor protein n=5 Tax=Gimesia TaxID=164945... [more]
A0A518A9L0_9PLAN1.540e-671.79Transcriptional activator FtrB n=6 Tax=Gimesia pan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127370contigM-pyrifera_M_contig127370:1..375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.80136-CDS-M-pyrifera_M_contig127370:0..3751622815787.80136-CDS-M-pyrifera_M_contig127370:0..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127370 1..375 -
1692277569.5835304-CDS-M-pyrifera_M_contig127370:0..3751692277569.5835304-CDS-M-pyrifera_M_contig127370:0..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127370 1..375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127370.5513.1prot_M-pyrifera_M_contig127370.5513.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127370 1..375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127370.5513.1

>prot_M-pyrifera_M_contig127370.5513.1 ID=prot_M-pyrifera_M_contig127370.5513.1|Name=mRNA_M-pyrifera_M_contig127370.5513.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MPMRDGSCLKVRSRIRKRLYFIKGDFSSGMGQIASLLIGRFPILQRIRFS
FLFRGWHYRRCRCCGIKSDTEIQTDFLVSSTKAEAAMEANPLLEILMQLR
FTAGLSEEDQHKLAAIAQKRKFRAG
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mRNA from alignment at M-pyrifera_M_contig127370:1..375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127370.5513.1 ID=mRNA_M-pyrifera_M_contig127370.5513.1|Name=mRNA_M-pyrifera_M_contig127370.5513.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig127370:1..375- (Macrocystis pyrifera P11B4 male)
ATGCCAATGCGGGATGGTTCCTGTCTGAAGGTTCGAAGTCGAATCAGGAA
GCGTCTTTATTTTATCAAAGGCGATTTTTCATCTGGTATGGGACAAATAG
CTTCTTTGCTGATAGGGAGATTCCCGATACTACAACGGATCCGTTTTTCG
TTTCTCTTCCGCGGTTGGCACTATAGACGCTGCCGGTGCTGCGGGATAAA
ATCCGATACAGAGATCCAGACTGACTTCCTTGTGAGTTCAACGAAAGCAG
AGGCTGCGATGGAGGCAAATCCGCTTCTGGAAATTCTGATGCAACTACGG
TTCACGGCAGGCCTGTCAGAAGAAGATCAACACAAACTGGCTGCAATAGC
ACAAAAAAGGAAATTCAGAGCTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127370:1..375-

>mRNA_M-pyrifera_M_contig127370.5513.1 ID=mRNA_M-pyrifera_M_contig127370.5513.1|Name=mRNA_M-pyrifera_M_contig127370.5513.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig127370:1..375- (Macrocystis pyrifera P11B4 male)
ATGCCAATGCGGGATGGTTCCTGTCTGAAGGTTCGAAGTCGAATCAGGAA
GCGTCTTTATTTTATCAAAGGCGATTTTTCATCTGGTATGGGACAAATAG
CTTCTTTGCTGATAGGGAGATTCCCGATACTACAACGGATCCGTTTTTCG
TTTCTCTTCCGCGGTTGGCACTATAGACGCTGCCGGTGCTGCGGGATAAA
ATCCGATACAGAGATCCAGACTGACTTCCTTGTGAGTTCAACGAAAGCAG
AGGCTGCGATGGAGGCAAATCCGCTTCTGGAAATTCTGATGCAACTACGG
TTCACGGCAGGCCTGTCAGAAGAAGATCAACACAAACTGGCTGCAATAGC
ACAAAAAAGGAAATTCAGAGCTGGGATGCCAATGCGGGATGGTTCCTGTC
TGAAGGTTCGAAGTCGAATCAGGAAGCGTCTTTATTTTATCAAAGGCGAT
TTTTCATCTGGTATGGGACAAATAGCTTCTTTGCTGATAGGGAGATTCCC
GATACTACAACGGATCCGTTTTTCGTTTCTCTTCCGCGGTTGGCACTATA
GACGCTGCCGGTGCTGCGGGATAAAATCCGATACAGAGATCCAGACTGAC
TTCCTTGTGAGTTCAACGAAAGCAGAGGCTGCGATGGAGGCAAATCCGCT
TCTGGAAATTCTGATGCAACTACGGTTCACGGCAGGCCTGTCAGAAGAAG
ATCAACACAAACTGGCTGCAATAGCACAAAAAAGGAAATTCAGAGCTGGG
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