mRNA_M-pyrifera_M_contig1269.5416.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 1.770e-156 Identity = 244/302 (80.79%), Postives = 263/302 (87.09%), Query Frame = 1
Query: 1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSR-GEDSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATAAAKAKRGTRRKNRERKVL 903
RLKSPDA+MFSKKNDTNPMEDETSAEFLM+KNDC+L FGSHNKKRPNN+VLGRTFDGHMLDMIELG+V Y+GL EL GLAKRVGSKPAFVF+GEKWGREEAYRK+QN+ LDFFRGQVVNE+ LAGLDHC+VCTAAQDKV+VRHYHIGFQRSGSKIP+V LKEMGPSLDL+IRRTSFAAKDLWKASVKKPRV ET+KTKNVSANQFGDKLGRIHLGRQDLSSMK VRRVKALRTV K ++ GE GA XXXXXXXXXX ATAAA+AKRGTRRKN+ERKVL
Sbjct: 54 RLKSPDAVMFSKKNDTNPMEDETSAEFLMSKNDCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELAGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLLDFFRGQVVNEVALAGLDHCVVCTAAQDKVYVRHYHIGFQRSGSKIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPRVAETRKTKNVSANQFGDKLGRIHLGRQDLSSMK----VRRVKALRTVGKGAKEGEGEGAEDGGGGDPMDGITTSGTGSTXXXXXXXXXXXATAAARAKRGTRRKNKERKVL 351
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA) HSP 1 Score: 282 bits (721), Expect = 4.380e-91 Identity = 139/247 (56.28%), Postives = 184/247 (74.49%), Query Frame = 1
Query: 1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQD-KVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGED 738
R+K P + M ++ND P +DET EFL KND +L FGSHNKKRPNN+VLGRTFDGH+LDM+E+G+ Y+G++E G AKRVGSKPA +F G+ W EE YRK++N+ +DFFRG VV+ ++LAGLDH +V TA + + +RHY I F+RSG+K+P++ L+ MGP DL +RR FAA DLWK + +KP+ + KK KNV++N F + +GRIHLGRQDLSSM VRRVKALR+ K+ RGE+
Sbjct: 54 RMKKPFSRMLGRRNDLTPFDDETGIEFLTTKNDSSLFLFGSHNKKRPNNIVLGRTFDGHILDMMEMGVTAYRGIDEFRGSAKRVGSKPAMLFEGDLWENEEKYRKLRNLLIDFFRGDVVDSVSLAGLDHVMVVTAVEGGPILLRHYLIAFKRSGTKVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPKQLKPKKVKNVTSNTF-ETVGRIHLGRQDLSSMN----VRRVKALRSGGKRKRGEE 295
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA) HSP 1 Score: 268 bits (684), Expect = 1.570e-85 Identity = 135/245 (55.10%), Postives = 177/245 (72.24%), Query Frame = 1
Query: 1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLA-KRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALR-TVSKKSR 729
R+K+P + M S+ ND +P EDE+ EFL KNDC+L AFGSHNKKRP+NLVLGRT+DG +LDM ELG+ +K + E A KR+GSKP VF G++W E + ++N+ LDFFRG V+ + L GLDH + CTA KV++RHYHI F++SG KIP V L+ GPSLDL +RR+ + DLW+A+ K+P+ KK KNV+ N+ GDK+GRIHLGRQDLSSMK V++VKALR T ++K R
Sbjct: 56 RVKNPHSRMLSRNNDIHPFEDESKMEFLCEKNDCSLFAFGSHNKKRPHNLVLGRTYDGRLLDMFELGVEKFKSVVETKAKAPKRIGSKPCIVFQGDEWEVEGPLKSLKNLLLDFFRGDEVDSVALPGLDHVMACTAVGGKVYLRHYHIAFKKSGGKIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPKQLRPKKVKNVTKNEMGDKVGRIHLGRQDLSSMK----VKKVKALRETPAEKKR 296
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: UPI001458B1DE (ribosome production factor 2 homolog n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B1DE) HSP 1 Score: 238 bits (606), Expect = 1.390e-73 Identity = 118/248 (47.58%), Postives = 171/248 (68.95%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGEDSGA 747
LK P+A+ + +KN P EDET EF K+D AL AFG H+KKRP+NL+LGR FD H+LDM ELGI +K + E+ G GSKP +FAGE + ++ +R+++N+F+DFFRG +V+++ LAGL+H I TA K+ +R+Y I ++SGSK P V L++MGPSLD IRRT A+ DL+K S+++P+ + +K KNVS N FG KLGRIH+ +QDL ++ R++K L+ SK ++ +D +
Sbjct: 54 LKKPNAVSYKRKNILRPFEDETPLEFFAKKSDAALFAFGCHSKKRPDNLILGRMFDFHILDMFELGIENFKSMYEMQGAKSNTGSKPCLLFAGEAFDQDTEHRRLKNLFIDFFRGPIVSQLRLAGLEHVIQITALDGKILLRNYKIKMKKSGSKTPRVELEDMGPSLDFVIRRTKLASDDLYKRSLRQPKTAKPRKIKNVSHNPFGSKLGRIHMDKQDLGKLQ----TRKMKGLKK-SKSAKSKDGAS 296
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL) HSP 1 Score: 237 bits (605), Expect = 3.600e-73 Identity = 123/237 (51.90%), Postives = 164/237 (69.20%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
LK+PDA M KKND +P +DET EFL KND +L GS+ KKRPNNLVLGRTFDGH+LD++EL +K +++ +K+ GSKPAFVF G++W E + K++N+ +D FRG V+ +I + G+DH IVCTA ++KV R Y I F+++ P V L+EMGP DL RR A+ DL KA+ KKP+ KK KN+S ++ GDKLGRIHLG+QD+ SM++R RVKALR
Sbjct: 87 LKAPDAKMMGKKNDIHPFDDETKIEFLTQKNDTSLFMVGSNTKKRPNNLVLGRTFDGHILDIMELEFSNFKSIDDFKCKSKKAPGSKPAFVFTGDQWESNETFAKLKNLLIDVFRGTVIEQINVKGIDHAIVCTAWKEKVFFRSYSIDFKKADGVHPRVELEEMGPRFDLHFRRQKLASADLMKAATKKPKGLAPKKIKNISRDELTGDKLGRIHLGKQDIYSMQSR----RVKALR 319
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: UPI001E1E049A (ribosome production factor 2 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E049A) HSP 1 Score: 234 bits (598), Expect = 6.290e-73 Identity = 112/244 (45.90%), Postives = 170/244 (69.67%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGE 735
LK DA+M+ +KN P EDET EF K D +L FGSH+KKRPNN+V+GR FD H+LDMIELGI +K + ++ G +G+KP +FAGE++ + Y +++N+F DFFRG V+ +I L G++H I+ +A K+++R+Y I ++SGSK+P + L++MGPS+D +RRT A+ DL+K S+KKP+ KK KN+S + FG +LGRIH+ +QDLS+++ R++K L+ K ++G+
Sbjct: 22 LKKIDAVMYKRKNILRPFEDETPLEFFSQKCDASLFMFGSHSKKRPNNIVIGRMFDYHVLDMIELGIDSFKSMFDIEGPKCPIGTKPCIMFAGEQFDTDPDYSRLKNLFADFFRGSVIKQIRLQGIEHVIMISAVDGKIYIRNYRILLKKSGSKVPRIELEDMGPSVDFTVRRTKIASDDLYKRSLKKPKTATIKKRKNISQDAFGSQLGRIHMQKQDLSNLQ----TRKMKGLKRQRKDNKGQ 261
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A024TUU5_9STRA (Ribosome production factor 2 homolog n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TUU5_9STRA) HSP 1 Score: 232 bits (591), Expect = 3.410e-71 Identity = 119/237 (50.21%), Postives = 159/237 (67.09%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
+K+PDA + SKKN+ +P +D S EFL KND +L GS KKRPNN++ GRTFDGH++DM+E+G +K ++E +K GSKP F+FAG +W + E Y+K++N+ +D FRG +V I L GLDH IVC+AA ++V RHY I FQ + P V L EMGP DL RR F + D+ K + KKP+ KK KNVS ++ GDK+GRIHL +QD+ SM+ VRRVKALR
Sbjct: 82 IKAPDAKVLSKKNELHPFDDPNSIEFLTHKNDTSLFVLGSSTKKRPNNIIFGRTFDGHIMDMLEMGFDNFKSIDEFKCKSKMAPGSKPCFLFAGAEWEQSEPYQKLKNVLVDIFRGTIVTAINLKGLDHVIVCSAANNRVLFRHYSIAFQLTTDTHPRVELDEMGPRFDLSFRRHKFGSADMMKVACKKPKELAPKKVKNVSRDELTGDKIGRIHLDKQDIYSMQ----VRRVKALR 314
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A2D4BFM4_PYTIN (Ribosome production factor 2 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFM4_PYTIN) HSP 1 Score: 232 bits (591), Expect = 3.960e-71 Identity = 122/237 (51.48%), Postives = 158/237 (66.67%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
LK+P+ M SKKND +P +DET EFL KND +L GSH KKRPNNLVLGRTFDGH+LDM+EL YK +E +K+ GSKP FVF G+ W E + K++N+ +D FRG VV+ + + GLDH IVCTA +D+V R Y I F+++ P V L EMGP DL RR A+ DL KA+ KKP+ KK KN++ ++ GDK+GRIHL +QD+ SM++R RVKA R
Sbjct: 87 LKAPEVKMMSKKNDIHPFDDETKVEFLTQKNDTSLFMVGSHTKKRPNNLVLGRTFDGHILDMMELEFTNYKSIEAFQCKSKKAPGSKPCFVFTGDLWDTHELFGKLKNLLIDVFRGTVVDSVNVKGLDHAIVCTAWKDRVFFRSYSIAFKKAXGVHPRVELDEMGPRFDLHFRRHKLASADLLKAATKKPKGLAPKKIKNITRDELTGDKIGRIHLEKQDVYSMQSR----RVKAXR 319
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: K8YU75_NANGC (Ribosome production factor 2 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU75_NANGC) HSP 1 Score: 232 bits (592), Expect = 6.000e-71 Identity = 121/247 (48.99%), Postives = 165/247 (66.80%), Query Frame = 1
Query: 1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAK-RVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTA-AQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGE 735
+L P+A S+KN+ P ED TS EFL KNDCAL FGSH+KKRP NL++GRT+D H+LDM+E G+ +GL+ + K R GSKP VFAG+ W ++ ++QN+F+DFFR VN++ LAG+D TA D + VR+YH+ F++S ++PNV L+ MGP+ L +RR AA DLW+ + K+P+ KK KN S N G+ +GR+H+GRQDL+SM RV+RVKALR K RGE
Sbjct: 89 KLLKPNAKFLSRKNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLDMVEFGVSSVEGLDAVKATEKKRCGSKPCLVFAGDGWHQDATLERIQNLFMDFFRVDEVNKVALAGIDAVTSFTAMGTDSILVRNYHVKFKKSQGRVPNVLLEAMGPNFTLTVRRHQLAAPDLWRTACKQPKGLRPKKVKNESTNVLGETVGRVHVGRQDLTSM----RVKRVKALR----KGRGE 327
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A1S3HGH2_LINUN (Ribosome production factor 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGH2_LINUN) HSP 1 Score: 231 bits (588), Expect = 6.720e-71 Identity = 108/225 (48.00%), Postives = 159/225 (70.67%), Query Frame = 1
Query: 4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKAR 678
LK PDA+MF KKN P+ED+TS EFL +ND +L FGSH KKRPNN+V+GR FD H+LDM+ELGI YK ++E +GSKP +FAGE + E Y++++N+ +DFFRG V+ I LAGL+H ++ T K+++R+Y + ++SGS+ P + L+E+GPS+D +RRT A+ DL+K + ++P+ + KK KN++ + FG KLGRIH+ +QDL ++ R
Sbjct: 69 LKKPDAVMFQKKNIMRPLEDQTSLEFLSDRNDASLFMFGSHQKKRPNNVVIGRFFDFHVLDMVELGIEKYKSMQEFHVGKFSLGSKPCLLFAGEAFENEPEYQRLKNLLIDFFRGPVIENIRLAGLEHVLLFTTLDGKIYLRNYKVQMKKSGSRTPRIELEEIGPSVDFSMRRTRLASDDLYKRARQQPKQAKPKKVKNINRDPFGSKLGRIHMEKQDLDKLQTR 293 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1269.5416.1 >prot_M-pyrifera_M_contig1269.5416.1 ID=prot_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=294bp MFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGback to top mRNA from alignment at M-pyrifera_M_contig1269:23345..27860- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1269.5416.1 ID=mRNA_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4516bp|location=Sequence derived from alignment at M-pyrifera_M_contig1269:23345..27860- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1269:23345..27860- >mRNA_M-pyrifera_M_contig1269.5416.1 ID=mRNA_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1764bp|location=Sequence derived from alignment at M-pyrifera_M_contig1269:23345..27860- (Macrocystis pyrifera P11B4 male)back to top |