mRNA_M-pyrifera_M_contig1269.5416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1269.5416.1
Unique NamemRNA_M-pyrifera_M_contig1269.5416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.770e-156
Identity = 244/302 (80.79%), Postives = 263/302 (87.09%), Query Frame = 1
Query:    1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSR-GEDSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATAAAKAKRGTRRKNRERKVL 903
            RLKSPDA+MFSKKNDTNPMEDETSAEFLM+KNDC+L  FGSHNKKRPNN+VLGRTFDGHMLDMIELG+V Y+GL EL GLAKRVGSKPAFVF+GEKWGREEAYRK+QN+ LDFFRGQVVNE+ LAGLDHC+VCTAAQDKV+VRHYHIGFQRSGSKIP+V LKEMGPSLDL+IRRTSFAAKDLWKASVKKPRV ET+KTKNVSANQFGDKLGRIHLGRQDLSSMK    VRRVKALRTV K ++ GE  GA                    XXXXXXXXXX ATAAA+AKRGTRRKN+ERKVL
Sbjct:   54 RLKSPDAVMFSKKNDTNPMEDETSAEFLMSKNDCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELAGLAKRVGSKPAFVFSGEKWGREEAYRKLQNLLLDFFRGQVVNEVALAGLDHCVVCTAAQDKVYVRHYHIGFQRSGSKIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPRVAETRKTKNVSANQFGDKLGRIHLGRQDLSSMK----VRRVKALRTVGKGAKEGEGEGAEDGGGGDPMDGITTSGTGSTXXXXXXXXXXXATAAARAKRGTRRKNKERKVL 351          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 282 bits (721), Expect = 4.380e-91
Identity = 139/247 (56.28%), Postives = 184/247 (74.49%), Query Frame = 1
Query:    1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQD-KVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGED 738
            R+K P + M  ++ND  P +DET  EFL  KND +L  FGSHNKKRPNN+VLGRTFDGH+LDM+E+G+  Y+G++E  G AKRVGSKPA +F G+ W  EE YRK++N+ +DFFRG VV+ ++LAGLDH +V TA +   + +RHY I F+RSG+K+P++ L+ MGP  DL +RR  FAA DLWK + +KP+  + KK KNV++N F + +GRIHLGRQDLSSM     VRRVKALR+  K+ RGE+
Sbjct:   54 RMKKPFSRMLGRRNDLTPFDDETGIEFLTTKNDSSLFLFGSHNKKRPNNIVLGRTFDGHILDMMEMGVTAYRGIDEFRGSAKRVGSKPAMLFEGDLWENEEKYRKLRNLLIDFFRGDVVDSVSLAGLDHVMVVTAVEGGPILLRHYLIAFKRSGTKVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPKQLKPKKVKNVTSNTF-ETVGRIHLGRQDLSSMN----VRRVKALRSGGKRKRGEE 295          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.570e-85
Identity = 135/245 (55.10%), Postives = 177/245 (72.24%), Query Frame = 1
Query:    1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLA-KRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALR-TVSKKSR 729
            R+K+P + M S+ ND +P EDE+  EFL  KNDC+L AFGSHNKKRP+NLVLGRT+DG +LDM ELG+  +K + E    A KR+GSKP  VF G++W  E   + ++N+ LDFFRG  V+ + L GLDH + CTA   KV++RHYHI F++SG KIP V L+  GPSLDL +RR+   + DLW+A+ K+P+    KK KNV+ N+ GDK+GRIHLGRQDLSSMK    V++VKALR T ++K R
Sbjct:   56 RVKNPHSRMLSRNNDIHPFEDESKMEFLCEKNDCSLFAFGSHNKKRPHNLVLGRTYDGRLLDMFELGVEKFKSVVETKAKAPKRIGSKPCIVFQGDEWEVEGPLKSLKNLLLDFFRGDEVDSVALPGLDHVMACTAVGGKVYLRHYHIAFKKSGGKIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPKQLRPKKVKNVTKNEMGDKVGRIHLGRQDLSSMK----VKKVKALRETPAEKKR 296          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: UPI001458B1DE (ribosome production factor 2 homolog n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B1DE)

HSP 1 Score: 238 bits (606), Expect = 1.390e-73
Identity = 118/248 (47.58%), Postives = 171/248 (68.95%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGEDSGA 747
            LK P+A+ + +KN   P EDET  EF   K+D AL AFG H+KKRP+NL+LGR FD H+LDM ELGI  +K + E+ G     GSKP  +FAGE + ++  +R+++N+F+DFFRG +V+++ LAGL+H I  TA   K+ +R+Y I  ++SGSK P V L++MGPSLD  IRRT  A+ DL+K S+++P+  + +K KNVS N FG KLGRIH+ +QDL  ++     R++K L+  SK ++ +D  +
Sbjct:   54 LKKPNAVSYKRKNILRPFEDETPLEFFAKKSDAALFAFGCHSKKRPDNLILGRMFDFHILDMFELGIENFKSMYEMQGAKSNTGSKPCLLFAGEAFDQDTEHRRLKNLFIDFFRGPIVSQLRLAGLEHVIQITALDGKILLRNYKIKMKKSGSKTPRVELEDMGPSLDFVIRRTKLASDDLYKRSLRQPKTAKPRKIKNVSHNPFGSKLGRIHMDKQDLGKLQ----TRKMKGLKK-SKSAKSKDGAS 296          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL)

HSP 1 Score: 237 bits (605), Expect = 3.600e-73
Identity = 123/237 (51.90%), Postives = 164/237 (69.20%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
            LK+PDA M  KKND +P +DET  EFL  KND +L   GS+ KKRPNNLVLGRTFDGH+LD++EL    +K +++    +K+  GSKPAFVF G++W   E + K++N+ +D FRG V+ +I + G+DH IVCTA ++KV  R Y I F+++    P V L+EMGP  DL  RR   A+ DL KA+ KKP+    KK KN+S ++  GDKLGRIHLG+QD+ SM++R    RVKALR
Sbjct:   87 LKAPDAKMMGKKNDIHPFDDETKIEFLTQKNDTSLFMVGSNTKKRPNNLVLGRTFDGHILDIMELEFSNFKSIDDFKCKSKKAPGSKPAFVFTGDQWESNETFAKLKNLLIDVFRGTVIEQINVKGIDHAIVCTAWKEKVFFRSYSIDFKKADGVHPRVELEEMGPRFDLHFRRQKLASADLMKAATKKPKGLAPKKIKNISRDELTGDKLGRIHLGKQDIYSMQSR----RVKALR 319          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: UPI001E1E049A (ribosome production factor 2 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E049A)

HSP 1 Score: 234 bits (598), Expect = 6.290e-73
Identity = 112/244 (45.90%), Postives = 170/244 (69.67%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGE 735
            LK  DA+M+ +KN   P EDET  EF   K D +L  FGSH+KKRPNN+V+GR FD H+LDMIELGI  +K + ++ G    +G+KP  +FAGE++  +  Y +++N+F DFFRG V+ +I L G++H I+ +A   K+++R+Y I  ++SGSK+P + L++MGPS+D  +RRT  A+ DL+K S+KKP+    KK KN+S + FG +LGRIH+ +QDLS+++     R++K L+   K ++G+
Sbjct:   22 LKKIDAVMYKRKNILRPFEDETPLEFFSQKCDASLFMFGSHSKKRPNNIVIGRMFDYHVLDMIELGIDSFKSMFDIEGPKCPIGTKPCIMFAGEQFDTDPDYSRLKNLFADFFRGSVIKQIRLQGIEHVIMISAVDGKIYIRNYRILLKKSGSKVPRIELEDMGPSVDFTVRRTKIASDDLYKRSLKKPKTATIKKRKNISQDAFGSQLGRIHMQKQDLSNLQ----TRKMKGLKRQRKDNKGQ 261          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A024TUU5_9STRA (Ribosome production factor 2 homolog n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TUU5_9STRA)

HSP 1 Score: 232 bits (591), Expect = 3.410e-71
Identity = 119/237 (50.21%), Postives = 159/237 (67.09%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
            +K+PDA + SKKN+ +P +D  S EFL  KND +L   GS  KKRPNN++ GRTFDGH++DM+E+G   +K ++E    +K   GSKP F+FAG +W + E Y+K++N+ +D FRG +V  I L GLDH IVC+AA ++V  RHY I FQ +    P V L EMGP  DL  RR  F + D+ K + KKP+    KK KNVS ++  GDK+GRIHL +QD+ SM+    VRRVKALR
Sbjct:   82 IKAPDAKVLSKKNELHPFDDPNSIEFLTHKNDTSLFVLGSSTKKRPNNIIFGRTFDGHIMDMLEMGFDNFKSIDEFKCKSKMAPGSKPCFLFAGAEWEQSEPYQKLKNVLVDIFRGTIVTAINLKGLDHVIVCSAANNRVLFRHYSIAFQLTTDTHPRVELDEMGPRFDLSFRRHKFGSADMMKVACKKPKELAPKKVKNVSRDELTGDKIGRIHLDKQDIYSMQ----VRRVKALR 314          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A2D4BFM4_PYTIN (Ribosome production factor 2 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFM4_PYTIN)

HSP 1 Score: 232 bits (591), Expect = 3.960e-71
Identity = 122/237 (51.48%), Postives = 158/237 (66.67%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRV-GSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQF-GDKLGRIHLGRQDLSSMKARGRVRRVKALR 708
            LK+P+  M SKKND +P +DET  EFL  KND +L   GSH KKRPNNLVLGRTFDGH+LDM+EL    YK +E     +K+  GSKP FVF G+ W   E + K++N+ +D FRG VV+ + + GLDH IVCTA +D+V  R Y I F+++    P V L EMGP  DL  RR   A+ DL KA+ KKP+    KK KN++ ++  GDK+GRIHL +QD+ SM++R    RVKA R
Sbjct:   87 LKAPEVKMMSKKNDIHPFDDETKVEFLTQKNDTSLFMVGSHTKKRPNNLVLGRTFDGHILDMMELEFTNYKSIEAFQCKSKKAPGSKPCFVFTGDLWDTHELFGKLKNLLIDVFRGTVVDSVNVKGLDHAIVCTAWKDRVFFRSYSIAFKKAXGVHPRVELDEMGPRFDLHFRRHKLASADLLKAATKKPKGLAPKKIKNITRDELTGDKIGRIHLEKQDVYSMQSR----RVKAXR 319          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: K8YU75_NANGC (Ribosome production factor 2 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU75_NANGC)

HSP 1 Score: 232 bits (592), Expect = 6.000e-71
Identity = 121/247 (48.99%), Postives = 165/247 (66.80%), Query Frame = 1
Query:    1 RLKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAK-RVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTA-AQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGE 735
            +L  P+A   S+KN+  P ED TS EFL  KNDCAL  FGSH+KKRP NL++GRT+D H+LDM+E G+   +GL+ +    K R GSKP  VFAG+ W ++    ++QN+F+DFFR   VN++ LAG+D     TA   D + VR+YH+ F++S  ++PNV L+ MGP+  L +RR   AA DLW+ + K+P+    KK KN S N  G+ +GR+H+GRQDL+SM    RV+RVKALR    K RGE
Sbjct:   89 KLLKPNAKFLSRKNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLDMVEFGVSSVEGLDAVKATEKKRCGSKPCLVFAGDGWHQDATLERIQNLFMDFFRVDEVNKVALAGIDAVTSFTAMGTDSILVRNYHVKFKKSQGRVPNVLLEAMGPNFTLTVRRHQLAAPDLWRTACKQPKGLRPKKVKNESTNVLGETVGRVHVGRQDLTSM----RVKRVKALR----KGRGE 327          
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Match: A0A1S3HGH2_LINUN (Ribosome production factor 2 homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGH2_LINUN)

HSP 1 Score: 231 bits (588), Expect = 6.720e-71
Identity = 108/225 (48.00%), Postives = 159/225 (70.67%), Query Frame = 1
Query:    4 LKSPDAIMFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDGHMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQNIFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPNVGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGDKLGRIHLGRQDLSSMKAR 678
            LK PDA+MF KKN   P+ED+TS EFL  +ND +L  FGSH KKRPNN+V+GR FD H+LDM+ELGI  YK ++E       +GSKP  +FAGE +  E  Y++++N+ +DFFRG V+  I LAGL+H ++ T    K+++R+Y +  ++SGS+ P + L+E+GPS+D  +RRT  A+ DL+K + ++P+  + KK KN++ + FG KLGRIH+ +QDL  ++ R
Sbjct:   69 LKKPDAVMFQKKNIMRPLEDQTSLEFLSDRNDASLFMFGSHQKKRPNNVVIGRFFDFHVLDMVELGIEKYKSMQEFHVGKFSLGSKPCLLFAGEAFENEPEYQRLKNLLIDFFRGPVIENIRLAGLEHVLLFTTLDGKIYLRNYKVQMKKSGSRTPRIELEEIGPSVDFSMRRTRLASDDLYKRARQQPKQAKPKKVKNINRDPFGSKLGRIHMEKQDLDKLQTR 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1269.5416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV0_ECTSI1.770e-15680.79Ribosome production factor 2 homolog n=2 Tax=Ectoc... [more]
A0A835ZC15_9STRA4.380e-9156.28Ribosome production factor 2 homolog n=1 Tax=Tribo... [more]
A0A7S2UZD7_9STRA1.570e-8555.10Ribosome production factor 2 homolog n=1 Tax=Fibro... [more]
UPI001458B1DE1.390e-7347.58ribosome production factor 2 homolog n=2 Tax=Pecte... [more]
A0A8K1FC18_PYTOL3.600e-7351.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001E1E049A6.290e-7345.90ribosome production factor 2 homolog n=1 Tax=Merce... [more]
A0A024TUU5_9STRA3.410e-7150.21Ribosome production factor 2 homolog n=6 Tax=Aphan... [more]
A0A2D4BFM4_PYTIN3.960e-7151.48Ribosome production factor 2 homolog n=1 Tax=Pythi... [more]
K8YU75_NANGC6.000e-7148.99Ribosome production factor 2 homolog n=3 Tax=Monod... [more]
A0A1S3HGH2_LINUN6.720e-7148.00Ribosome production factor 2 homolog n=2 Tax=Lingu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1269contigM-pyrifera_M_contig1269:23345..27860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.6
Seed ortholog evalue4.7e-120
Seed eggNOG ortholog2880.D7FJV0
KEGG koko:K14847
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004611,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008964,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016829,GO:0016830,GO:0016831,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0099402,GO:1901360,GO:1901363
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG5106@1,KOG3031@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons6
Model size906
Cds size882
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.7936451-CDS-M-pyrifera_M_contig1269:23344..235661622815782.7936451-CDS-M-pyrifera_M_contig1269:23344..23566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 23345..23566 -
1692277567.1244266-CDS-M-pyrifera_M_contig1269:23344..235661692277567.1244266-CDS-M-pyrifera_M_contig1269:23344..23566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 23345..23566 -
1622815782.8090153-CDS-M-pyrifera_M_contig1269:24340..244491622815782.8090153-CDS-M-pyrifera_M_contig1269:24340..24449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 24341..24449 -
1692277567.1389449-CDS-M-pyrifera_M_contig1269:24340..244491692277567.1389449-CDS-M-pyrifera_M_contig1269:24340..24449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 24341..24449 -
1622815782.8231602-CDS-M-pyrifera_M_contig1269:25232..253421622815782.8231602-CDS-M-pyrifera_M_contig1269:25232..25342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 25233..25342 -
1692277567.1486168-CDS-M-pyrifera_M_contig1269:25232..253421692277567.1486168-CDS-M-pyrifera_M_contig1269:25232..25342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 25233..25342 -
1622815782.835076-CDS-M-pyrifera_M_contig1269:26204..263351622815782.835076-CDS-M-pyrifera_M_contig1269:26204..26335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 26205..26335 -
1692277567.1634202-CDS-M-pyrifera_M_contig1269:26204..263351692277567.1634202-CDS-M-pyrifera_M_contig1269:26204..26335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 26205..26335 -
1622815782.8473346-CDS-M-pyrifera_M_contig1269:26687..268651622815782.8473346-CDS-M-pyrifera_M_contig1269:26687..26865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 26688..26865 -
1692277567.1786234-CDS-M-pyrifera_M_contig1269:26687..268651692277567.1786234-CDS-M-pyrifera_M_contig1269:26687..26865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 26688..26865 -
1622815782.8573477-CDS-M-pyrifera_M_contig1269:27704..278361622815782.8573477-CDS-M-pyrifera_M_contig1269:27704..27836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 27705..27836 -
1692277567.1925597-CDS-M-pyrifera_M_contig1269:27704..278361692277567.1925597-CDS-M-pyrifera_M_contig1269:27704..27836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1269 27705..27836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.8687682-UTR-M-pyrifera_M_contig1269:27836..278601622815782.8687682-UTR-M-pyrifera_M_contig1269:27836..27860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1269 27837..27860 -
1692277567.202816-UTR-M-pyrifera_M_contig1269:27836..278601692277567.202816-UTR-M-pyrifera_M_contig1269:27836..27860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1269 27837..27860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1269.5416.1prot_M-pyrifera_M_contig1269.5416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1269 23345..27836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1269.5416.1

>prot_M-pyrifera_M_contig1269.5416.1 ID=prot_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=294bp
MFSKKNDTNPMEDETSAEFLMAKNDCALMAFGSHNKKRPNNLVLGRTFDG
HMLDMIELGIVGYKGLEELVGLAKRVGSKPAFVFAGEKWGREEAYRKMQN
IFLDFFRGQVVNEITLAGLDHCIVCTAAQDKVHVRHYHIGFQRSGSKIPN
VGLKEMGPSLDLEIRRTSFAAKDLWKASVKKPRVTETKKTKNVSANQFGD
KLGRIHLGRQDLSSMKARGRVRRVKALRTVSKKSRGEDSGAEGGESGGKG
EAAGGAGGGGVGGGEGGNKETGATAAAKAKRGTRRKNRERKVL*
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mRNA from alignment at M-pyrifera_M_contig1269:23345..27860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1269.5416.1 ID=mRNA_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4516bp|location=Sequence derived from alignment at M-pyrifera_M_contig1269:23345..27860- (Macrocystis pyrifera P11B4 male)
CGGTTGAAGTCTCCAGATGCCATCATGTTTTCCAAGAAAAACGACACGAA CCCGATGGAAGACGAGACCTCGGCTGAATTCCTGATGGCGAAGAACGACT GCGCGCTCATGGCTTTCGGAAGCCACAACAAGAAACGTCCGAATAATCTC GTTCTGGTGAGACCCGGGGTACAGTATCATAGGCAGGGGATTGGGGAGAG TAAAAGAGAGAGCGAGTCCCTCCTTGTTGTGGATCGTCGACACGAGGAGG CGTGTCTCCTCCGGCCAGTAGTGGTTTAAGAGTTGGCCAATTCTCGGACG TAAGGGGTGAGAGTGCATACAAACCCATATTTGCGGCTTCGTTCAGAAGG TTAACTTTTCCCAGGCGATGGGGGCTGCGGTTGTAGGCTTAGAGTCATGG TGAGTCTTTGTAGGCAAGTCGATTTCAACCAATTTGTTGGAGCGGGACGA AGTTATACACATGGCCGCCCCCAGCCGTTTTTGTTTTTTTAGTGAACAAG ACGTAGAATCAGAGCCCCGGTTCTTGCGGTGACCGACTGTGCACACTGAA CGGGCTGGAGCTGTAGCGCTGCTATTAACGCTGTTGTTATAGTAAGGTAT GCCCAAGCGCTCACGCATGTGGACTTGATTCGACACAATACCCTACACAG TTAAGTAGTTGCGTCATATATTTTCTGCTTCGGTCTTGGACATCCGTGGT CTTGCCTGTCCGCGGACGGCGCGGTCGGAGCTCACCGTCTGGCTTGCGTG TTCCTGGTGCCGGGGCACCTACCTCTCTTGTCCTCGTTCATCACGCCACC ATCCCTGTCTCATACCACTCTCGTCTGTACATGCAAGAACCGTCTGTTTA TGAATGTTAATACGCCTAGCGTCCTCACCTTTTCGGGGCAGAGCTGTACT GGCAATGCTATACCTCCGGGCGAAGTTCGCATCACAGCTCACCCGCCCCT GATGTCCCTACCCAATGCGTCGTGTTGTGTTGCGACCTTCTCAAGGGCCG GACGTTCGACGGGCACATGCTGGACATGATCGAGCTAGGTATCGTGGGCT ACAAGGGACTCGAGGAACTGGTGGGGCTTGCCAAGCGCGTTGGGTCTAAG CCGGCGTTTGTTTTCGCTGGGGAGAAGTGGGGGCGAGAGGAAGCGTACCG GAAGATGCAGAACATTTTTCTTGGTGAGGCCCTCTATAGACACCCGGCTC TGCGCTTTGTCGGCCATACCTGATGAAATTCAAACATGGATGTATTTGCT GGACTGTTCGCGAAGGATCGGTTTTACAACGCGCCTTTTTCGATAGCGTC ACGTTTTCTTGCAGTGCATGCATCACCTGATCATAAAGGGCTACTCCGAA TTATGATAGATCACCCGGTTCCGGGAGAGGTGCCTGCTCGACTTTCACCA CATGGTTTCATGGTGGCCAGCTTGACTTGCCTCCCCCTTATTTTCTAACC CTCCCCTCCCCCACCTTCGCATGCTTCCATCGTTGGGTGTGCTGTCGCGA CGAACGGGGTACTGGGATTCCGAAGACTTTTTCCGAGGTCAAGTGGTGAA CGAGATCACGTTGGCGGGTCTGGACCACTGCATCGTATGCACAGCGGCGC AGGACAAGGTGCACGTGCGGCACTACCACATCGGTTTCCAGCGGTCGGGG TCCAAGGTAAGAAGGGCACTACGGTTGGCCTGGCTTGTCGCATATCTTCG CGCGGGAGCTCGTGGATGAAGTTGTATTTGGTTGATTTTGGCTGAGGCAT CTTCTGAATACGTACACATTAGTGCGGACCTTTCACCTCGTCTCGTTTTT TTTCCGGTTTTTTGTGTGGTACCTTAAGAAAAAGACGGCATAGCGTCCGC ACTGCTCTACTCAATGGTAGTCGCGATACTCACATCAGTCTGCCGTGGTG CGCAGGTTTTGTGAAAAAATGGACAGACATGTTGTTTAGCCCATATATAT TTTTGTATTAATAGTAGTATTCGGAGTGTTTATGTCAGACAATCGGCTGG TTGATTTCTCTCCAGTGGAGGGGAACGCACTCGGCCCTGTTTGGATCAAA GATGTCGGTTGACGATCTAGACGGTCTAGTTTTCACTTGTCCAGGCCTCA TGAGACTTCACCATACTATGTTTGGTGTGGGTATGATATGTCCTTGGCGG CCGTCCGTCACGAGGCAGGAGTGGTGTCAACCGATATATAATATGCTGGT TTTAGTGTGCAGAGTTCTGTTAAGGATGTCCGTCAAGGACAAGAGTGCCG TCAACCGACATATACTATACTAATTTTGGCGCGTGCAGTTCCTGGACGGC TGTCCGTCAAGCGGCAAGAGTGCCGTCAACCAGCATCCCATATACTGTTG TAGTGTGGGGGTTTCCTTGACGGCCGCCCGTCGAGGGTCAAGAGAGTGCC GTCAACCGTCGCGCTATCTTGGGGTTCGGATTGTGCATCGTTCGATGTGC AACCGATAAGGCCGCGTGTACAGTTCGTGAACCTGAGTCACGACAACGTG TTGGTGTTCTTGTTGCAGATCCCGAACGTGGGGTTGAAGGAGATGGGACC GTCGCTGGACCTGGAGATCCGACGCACCAGCTTCGCTGCCAAGGACCTGT GGAAAGCGTCCGTGAAAAAGCCTAGAGTGTGAGTACGCTGTTTTGTTTTC AGTTGTCCGTCTGTCTGTCCCGCTCCTTCGTTCTCTACCTACCTTTATAT GGGATTGTGCTCTCGGTGCTACTGCTGATTTTTTGTTTTTCGATACGGCG GCATTTAGAGCTCTCGAGTTCTCAAAACGATGTTTGCTGCTTTGGATACG AACTTTTATACGCTTTAATTTAGCGGGATATTGAAGTGTACCAAGTACCA GGTTCGAGTCTGGTAGTGTATTTCCAGCCTCTGCGGTGGACGCTGGGCGT ATCGCCGCACGGGACTAAACCAGGAGGTTTTGGGCTCACCATGTCTCGCT GGTATCTATAGTACATGGTGCATCCTATTCATGGTTTCTTGTATTTGCGG AACGGAAGCGTTGCACATCATGAGCTACCGGAGACGTTTTGGAGGTTGTC GCAAGTGCCTGTGAGATGTTCAAGGACAGTTTCTGATGCTTGTCTGGCCG CTGTATTGGTTGCAAAGCGCGCCGCGATTTTCTATTGCGTTGGTCACCTC GACGGCCCCACCTGTCGTAGACTAGGTTCTCAATTTCCTGAGTACATAAT CCAGCTGAAACAAGTTTGGCCGAAATGTGCCACGTGGTTGCTGTGCGTCA TGCTAGCCGTAGGATAGCAAGGGTGGCTGTGTTGTTGATTCGATAGGGAA GGCTTTTGCTCAACGTTATTCTCGACGCCCTTCTCTCCGATGTTACGACG TCTCAGAAAGCTTTTCCTGCTTGTGGTGTATATGCCTCGTGCTCGTCTGA CGGTTGAGCAGGACCGAGACGAAAAAGACGAAGAACGTTTCCGCGAACCA GTTCGGGGACAAGCTGGGACGCATCCATCTAGGCAGACAGGACCTTTCGA GCATGAAGGCGAGGGGCCGTGTGATGTTGGCATCGGTGTTCCTTGTGGCG AGGGTGTTCTTGTTTATGGAGTGCTCTGCATGTCATTGCGTAGCCTAGAG TTGTGGCCTCGTCCCTCCACGGATGACGCGTGACGTATCGACAGCTTTTT GCGTGTTTCTCGGATTTTGCGCGACAGTATTTAGAGATCCGCGTGGTCTG GGCGACTTGGCGTGTCGTCACGATGCCTTTTTTTGTTTTCTGCTCAGTGC TTGGAAGTTCGTCTGTCGCATATTTGATTTTAGGGGCAAACCTGTACGGT GGGGTGGCTCGAAGCGCGCTCACCCGGCGGCACAAAACACGCCAAGCGAA CGCGCTTTCAATTTACGGTGGTGCAAGGAGTTTACGCTTTCCTGTCATTG ATATATCGTCGTAAAGGAAAGTGTTGCGGAAAGGTAAGGTTACGGATGAT GAGGATATGAGGGGTTATCGACAAGTAACGGTATCGATCAGAAGGGCTGT CAAATATAGAAGGGTTGTCGGTTATCAATATGTTCGCACAAACAAGCTAC CTCACAGGTTGATGACCAACTGCTAAGCCAGGCACCACAAGACGTCTCCG CTTCCATGTCCCGGCACGTCTTGACGACCAGCCTGCACTGCCCTCGCGTC GTCACAAACGTTTTTGTAGTCACAAACTGTTGAAACGCCGATGCCTCAGA CACCAATCACAAGCCGCACGATTCGCTTCCCGAAACCTGACAAGACACAC CACAAACCGCGCTCCTGTGATGATGTCCCGCCCCTACCCGGCAGGTCCGC CGTGTCAAAGCCCTTCGCACAGTTTCGAAGAAGTCGCGCGGCGAGGACAG CGGCGCAGAAGGAGGGGAGAGCGGTGGCAAGGGAGAGGCGGCCGGTGGCG CAGGCGGCGGAGGTGTTGGTGGGGGCGAGGGGGGCAACAAAGAAACCGGC GCGACGGCAGCTGCTAAGGCCAAGCGTGGCACGCGTCGCAAGAATAGGGA GAGGAAAGTTCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1269:23345..27860-

>mRNA_M-pyrifera_M_contig1269.5416.1 ID=mRNA_M-pyrifera_M_contig1269.5416.1|Name=mRNA_M-pyrifera_M_contig1269.5416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1764bp|location=Sequence derived from alignment at M-pyrifera_M_contig1269:23345..27860- (Macrocystis pyrifera P11B4 male)
ATGTTTTCCAAGAAAAACGACACGAACCCGATGGAAGACGAGACCTCGGC
TGAATTCCTGATGGCGAAGAACGACTGCGCGCTCATGGCTTTCGGAAGCC
ACAACAAGAAACGTCCGAATAATCTCGTTCTGATGTTTTCCAAGAAAAAC
GACACGAACCCGATGGAAGACGAGACCTCGGCTGAATTCCTGATGGCGAA
GAACGACTGCGCGCTCATGGCTTTCGGAAGCCACAACAAGAAACGTCCGA
ATAATCTCGTTCTGGGCCGGACGTTCGACGGGCACATGCTGGACATGATC
GAGCTAGGTATCGTGGGCTACAAGGGACTCGAGGAACTGGTGGGGCTTGC
CAAGCGCGTTGGGTCTAAGCCGGCGTTTGTTTTCGCTGGGGAGAAGTGGG
GGCGAGAGGAAGCGTACCGGAAGATGCAGAACATTTTTCTTGGGCCGGAC
GTTCGACGGGCACATGCTGGACATGATCGAGCTAGGTATCGTGGGCTACA
AGGGACTCGAGGAACTGGTGGGGCTTGCCAAGCGCGTTGGGTCTAAGCCG
GCGTTTGTTTTCGCTGGGGAGAAGTGGGGGCGAGAGGAAGCGTACCGGAA
GATGCAGAACATTTTTCTTGACTTTTTCCGAGGTCAAGTGGTGAACGAGA
TCACGTTGGCGGGTCTGGACCACTGCATCGTATGCACAGCGGCGCAGGAC
AAGGTGCACGTGCGGCACTACCACATCGGTTTCCAGCGGTCGGGGTCCAA
GACTTTTTCCGAGGTCAAGTGGTGAACGAGATCACGTTGGCGGGTCTGGA
CCACTGCATCGTATGCACAGCGGCGCAGGACAAGGTGCACGTGCGGCACT
ACCACATCGGTTTCCAGCGGTCGGGGTCCAAGATCCCGAACGTGGGGTTG
AAGGAGATGGGACCGTCGCTGGACCTGGAGATCCGACGCACCAGCTTCGC
TGCCAAGGACCTGTGGAAAGCGTCCGTGAAAAAGCCTAGAGTATCCCGAA
CGTGGGGTTGAAGGAGATGGGACCGTCGCTGGACCTGGAGATCCGACGCA
CCAGCTTCGCTGCCAAGGACCTGTGGAAAGCGTCCGTGAAAAAGCCTAGA
GTGACCGAGACGAAAAAGACGAAGAACGTTTCCGCGAACCAGTTCGGGGA
CAAGCTGGGACGCATCCATCTAGGCAGACAGGACCTTTCGAGCATGAAGG
CGAGGGGCCGTGACCGAGACGAAAAAGACGAAGAACGTTTCCGCGAACCA
GTTCGGGGACAAGCTGGGACGCATCCATCTAGGCAGACAGGACCTTTCGA
GCATGAAGGCGAGGGGCCGTGTCCGCCGTGTCAAAGCCCTTCGCACAGTT
TCGAAGAAGTCGCGCGGCGAGGACAGCGGCGCAGAAGGAGGGGAGAGCGG
TGGCAAGGGAGAGGCGGCCGGTGGCGCAGGCGGCGGAGGTGTTGGTGGGG
GCGAGGGGGGCAACAAAGAAACCGGCGCGACGGCAGCTGCTAAGGCCAAG
CGTGGCACGCGTCGCAAGAATAGGGAGAGGAAAGTTCTGTAAGTCCGCCG
TGTCAAAGCCCTTCGCACAGTTTCGAAGAAGTCGCGCGGCGAGGACAGCG
GCGCAGAAGGAGGGGAGAGCGGTGGCAAGGGAGAGGCGGCCGGTGGCGCA
GGCGGCGGAGGTGTTGGTGGGGGCGAGGGGGGCAACAAAGAAACCGGCGC
GACGGCAGCTGCTAAGGCCAAGCGTGGCACGCGTCGCAAGAATAGGGAGA
GGAAAGTTCTGTAA
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