mRNA_M-pyrifera_M_contig12647.5336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12647.5336.1
Unique NamemRNA_M-pyrifera_M_contig12647.5336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12647.5336.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.080e-54
Identity = 99/172 (57.56%), Postives = 109/172 (63.37%), Query Frame = 1 
Query:   52 VCPGVSTPRPLGRHAHAAAYIESKVDSVNALFVFGGRENAEELAPLGDLWMFDFTVMRWAEVTPAS-KNAPANRFEHSLTVSSTLEKNAFHGWRLILDSYTFYTSNYFHIRGVTILSYFQGFSWGRVWKGGAGDGVASLVVFGGETIGRTGQAIYMNDVWLYTPHIGQWREV 564
            VCPGVST RPLGRHAHA+AYIESK D++NALF+FGGREN +EL PLGDLWMFDFT MRW E+TP S K AP NRF HSLTV                                              W+GG GDGVASLVVFGGETI RTGQ ++MNDVWLYTP  G WR+V
Sbjct:  436 VCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTV----------------------------------------------WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQV 561
[Close]
BLAST of mRNA_M-pyrifera_M_contig12647.5336.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.700e-49
Identity = 89/166 (53.61%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:   79 PLGRHAHAAAYIESKVDSVNALFVFGGRENAEELAPLGDLWMFDFTVMRWAEVTPASKN-APANRFEHSLTVSSTLEKNAFHGWRLILDSYTFYTSNYFHIRGVTILSYFQGFSWGRVWKGGAGDGVASLVVFGGETIGRTGQAIYMNDVWLYTPHIGQWREVRCG 573
            P  RH HA+AYIESK D++NALF+FGGREN ++L PLGDLWMFDFT MRW+E+TP SK  AP NRF HSLTV                                              W+GG GDGVASLVVFGGETI RTGQ ++MNDVWLYTP  G WREVR  
Sbjct:  295 PALRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTV----------------------------------------------WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVRSS 414
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12647.5336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHR5_9PHAE2.080e-5457.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1X6_ECTSI4.700e-4953.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12647contigM-pyrifera_M_contig12647:403..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12647.5336.1prot_M-pyrifera_M_contig12647.5336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12647 403..2827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.1103334-CDS-M-pyrifera_M_contig12647:402..6021622815779.1103334-CDS-M-pyrifera_M_contig12647:402..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 403..602 +
1692277565.3658864-CDS-M-pyrifera_M_contig12647:402..6021692277565.3658864-CDS-M-pyrifera_M_contig12647:402..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 403..602 +
1622815779.120377-CDS-M-pyrifera_M_contig12647:1325..14631622815779.120377-CDS-M-pyrifera_M_contig12647:1325..1463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 1326..1463 +
1692277565.3758638-CDS-M-pyrifera_M_contig12647:1325..14631692277565.3758638-CDS-M-pyrifera_M_contig12647:1325..1463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 1326..1463 +
1622815779.132844-CDS-M-pyrifera_M_contig12647:2326..24141622815779.132844-CDS-M-pyrifera_M_contig12647:2326..2414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 2327..2414 +
1692277565.3856428-CDS-M-pyrifera_M_contig12647:2326..24141692277565.3856428-CDS-M-pyrifera_M_contig12647:2326..2414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 2327..2414 +
1622815779.1425302-CDS-M-pyrifera_M_contig12647:2662..28271622815779.1425302-CDS-M-pyrifera_M_contig12647:2662..2827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 2663..2827 +
1692277565.3964076-CDS-M-pyrifera_M_contig12647:2662..28271692277565.3964076-CDS-M-pyrifera_M_contig12647:2662..2827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12647 2663..2827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12647.5336.1

>prot_M-pyrifera_M_contig12647.5336.1 ID=prot_M-pyrifera_M_contig12647.5336.1|Name=mRNA_M-pyrifera_M_contig12647.5336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
SSSSSSSSSSSSPEPVVVCPGVSTPRPLGRHAHAAAYIESKVDSVNALFV
FGGRENAEELAPLGDLWMFDFTVMRWAEVTPASKNAPANRFEHSLTVSST
LEKNAFHGWRLILDSYTFYTSNYFHIRGVTILSYFQGFSWGRVWKGGAGD
GVASLVVFGGETIGRTGQAIYMNDVWLYTPHIGQWREVRCGPTFDQ*
back to top

mRNA from alignment at M-pyrifera_M_contig12647:403..2827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12647.5336.1 ID=mRNA_M-pyrifera_M_contig12647.5336.1|Name=mRNA_M-pyrifera_M_contig12647.5336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2425bp|location=Sequence derived from alignment at M-pyrifera_M_contig12647:403..2827+ (Macrocystis pyrifera P11B4 male)
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGCCCTGAACCGGTGGT
GGTGTGCCCGGGGGTATCGACGCCTCGTCCCCTGGGTAGACACGCCCACG
CGGCGGCGTACATCGAATCCAAGGTGGATTCCGTGAACGCGCTGTTTGTC
TTCGGGGGGAGGGAAAACGCGGAGGAATTGGCGCCGCTTGGGGACCTGTG
GTAAGCGCCGTTTTTTTCGAGTATGAGAATGTTTTATGTTTCATGGAAAA
GAGGCGTAATGTCAGCCTTAGGCGTAAAGTCAAGTAACTGACTATGTAGC
ACTTATCAATTATGAGGCGCCTCACTTGATTATAGTATAGGAGATCTATA
TCCGCCCGCAAAACCTGATTTTGGTAAATGGTGGCGTCTTAGCCTCGGCC
TATCGTAGACATTGTTCGAATTTTATGAAGGTATTATGATAAAAAAGGAG
ATCCATGATAATGAGGCATGCCTTCATGCCTCATTGCCTTATTTGGTAGT
TTCTCAAGTCAGTGCCCTTAAGGAACCCCGTCAGTCCCAGTAACAGTTTG
GCAAAAAAAAGGTACGGTACCTCTATCGTAGCACCCGCAGAAAAAACATG
ACCAGATTGTGGTATTGTATCTGGTACGGTAAGTCTTGTAAGTTTTGTGT
GCGTGTTTTCGAGATTCGAGACATACCATACTGTCCTGGTACGGGTAGAT
AGTGCCCATCATACTAATTCCTCAGGATGTTGTGCTCTATATATACGTTG
ATTATGTCGATGATGATGATGATTATTGTGCTGATGTCTATAATGACAAT
GATGCTTATCGTGGTGATTGGTGATGATGGTGGCGATGAACGATGATGTT
TCTCAGCATGGCGTTTTGTTTTTTGTTCTTCCACTTCTTTTCATGTTCTT
GGTCGCGTTCCCTCTCTCGTCAGGATGTTCGACTTCACGGTGATGCGCTG
GGCTGAAGTGACGCCGGCGTCGAAAAACGCTCCGGCCAACAGGTTCGAGC
ACTCTCTCACGGTGAGCTCCACCCTCGAGAAAAATGCCTTTCACGGGTGG
CGCCTTATTTTGTGAGCGATGCCTTTCAGGGGCGGTGCCTTGTTGTCTGA
GCAACGTCTTGTAGGGGTGGGACCTTATTTTCTGAGCAAAGTCTTTTAGG
GGTGGGGGCTTGTTTTCTGAGCTTGTCCATCACATGAGAGGGGCTCAATA
CCTCACCCGAAGAAGTTTGATCGCGTCACCCGACCAATATTTCTGTGCGC
TGCGTAGTCCTAAATCAGATGTGCCGCTACTAGTGCCATACTCACCGGCC
AAAATGCACACACAACGTGAAGAGCTCGATCTGTCTGAAAATGTCGAGCT
AAAACAGCGGTACCCCCCCCCCCCTCCCCCCCGTCGCATACCCCCAAGGG
TTGGCGTCGGTTGGCGACGACGCTGTAATACAAGGTATTGGTCGCCCAAG
GACGCGTACTGCAGTGGAGGGTTGCACCTGCTACTACTGTATACCTCACT
CAAAAGCGGAATTTTGGGGAGAAAATGAAGACCTAACCTTTGGCCGAGGC
ATACGTGTCAAGAACTATTTGCCAAAAACAAAGTGTATTCCAACGATATC
GTGTCCCTCTTGTACGAAATACGCTTTTTTTACACTACTATTGGTACTAA
ATGATGATTTTCTTTTCGGCAACCGTCACTCTACGTTTTCTTGTGACTCC
ATTTTCGATACATCGTGCATCATACAGGCCTCACTTGCAAAAATGAATTA
AATTGTATTGGCATTCGGTCCACTCTCGTTATCGACCTTCCACTTTATGT
CTCGGTCTTCTTCCGATTTGTGTATCGTAGCATTGCGTCATATTCCATCA
AATATCGGGTACTGTAGTTTCTCCGTCATAAATAACAAATAGTTTGGCCA
AAATGCGCGACCGCTATCGTAGAGAGACTCCTACACATTCTACACATCCA
ACTATTTCCACATCCGAGGGGTGACGATATTGAGTTATTTTCAGGGCTTT
TCATGGGGTCGGGTCGGATGGGGCCACCTAGCCCGACCAAACCCGACTCA
ATCCAACCCGTGAGAGTTTGAGAACTTCCTGACCCGACTCGACAAGACCC
GACCCGACTTGACCCGACCCGACCCGACCCGACTTGACCGGACCCGGCCC
GACCCGATCCGACGCGATCCACGGGTTTTCGAAGACCTCCTGAGCCGTGA
ATATACCTGATTGGCTGATGGTTTCCGTGCTTCCTATATTGATGTATGCA
TACAAAGCAGGTGTGGAAGGGAGGGGCGGGCGACGGGGTGGCATCCCTCG
TTGTCTTCGGCGGGGAGACGATCGGCAGGACCGGCCAGGCCATCTACATG
AACGACGTCTGGCTCTACACCCCTCACATCGGCCAATGGCGCGAGGTGAG
ATGCGGCCCAACCTTTGACCAATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12647:403..2827+

>mRNA_M-pyrifera_M_contig12647.5336.1 ID=mRNA_M-pyrifera_M_contig12647.5336.1|Name=mRNA_M-pyrifera_M_contig12647.5336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig12647:403..2827+ (Macrocystis pyrifera P11B4 male)
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGCCCTGAACCGGTGGT
GGTGTGCCCGGGGGTATCGACGCCTCGTCCCCTGGGTAGACACGCCCACG
CGGCGGCGTACATCGAATCCAAGGTGGATTCCGTGAACGCGCTGTTTGTC
TTCGGGGGGAGGGAAAACGCGGAGGAATTGGCGCCGCTTGGGGACCTGTG
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGCCCTGAACCGGTGGT
GGTGTGCCCGGGGGTATCGACGCCTCGTCCCCTGGGTAGACACGCCCACG
CGGCGGCGTACATCGAATCCAAGGTGGATTCCGTGAACGCGCTGTTTGTC
TTCGGGGGGAGGGAAAACGCGGAGGAATTGGCGCCGCTTGGGGACCTGTG
GATGTTCGACTTCACGGTGATGCGCTGGGCTGAAGTGACGCCGGCGTCGA
AAAACGCTCCGGCCAACAGGTTCGAGCACTCTCTCACGGTGAGCTCCACC
CTCGAGAAAAATGCCTTTCACGGGTGGCGCCTTATTTTGATGTTCGACTT
CACGGTGATGCGCTGGGCTGAAGTGACGCCGGCGTCGAAAAACGCTCCGG
CCAACAGGTTCGAGCACTCTCTCACGGTGAGCTCCACCCTCGAGAAAAAT
GCCTTTCACGGGTGGCGCCTTATTTTAGACTCCTACACATTCTACACATC
CAACTATTTCCACATCCGAGGGGTGACGATATTGAGTTATTTTCAGGGCT
TTTCATGGGGTCGGAGACTCCTACACATTCTACACATCCAACTATTTCCA
CATCCGAGGGGTGACGATATTGAGTTATTTTCAGGGCTTTTCATGGGGTC
GGGTGTGGAAGGGAGGGGCGGGCGACGGGGTGGCATCCCTCGTTGTCTTC
GGCGGGGAGACGATCGGCAGGACCGGCCAGGCCATCTACATGAACGACGT
CTGGCTCTACACCCCTCACATCGGCCAATGGCGCGAGGTGAGATGCGGCC
CAACCTTTGACCAATAAGTGTGGAAGGGAGGGGCGGGCGACGGGGTGGCA
TCCCTCGTTGTCTTCGGCGGGGAGACGATCGGCAGGACCGGCCAGGCCAT
CTACATGAACGACGTCTGGCTCTACACCCCTCACATCGGCCAATGGCGCG
AGGTGAGATGCGGCCCAACCTTTGACCAATAA
back to top