mRNA_M-pyrifera_M_contig126437.5324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126437.5324.1
Unique NamemRNA_M-pyrifera_M_contig126437.5324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: A0A358SQD2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A358SQD2_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 9.340e-44
Identity = 100/172 (58.14%), Postives = 123/172 (71.51%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSS---RGTRIEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCSGVVGNVISGNAGHGIVMRGATRNTVV 507
            SGPGSLRAAI SA+ +     T I F+V G I L TALPA+T R TID T+APGY +GG PV+ +D   + GL FAAG+AGSQLLGV+V DA G GVTL+A  IT+N +Y+GL+  G A GN G G+ VS  SS N +GLN +G SG V NVISGN G+GI + G++ NTVV
Sbjct:   97 SGPGSLRAAIQSADMAPPRTSTIISFSVHGVITLATALPAVTSRVTIDATSAPGYQSGGPPVVEIDCHGQAGLDFAAGSAGSQLLGVAVDDASGNGVTLNAGSITINHDYIGLDLGGMALGNDGDGIYVSAASSRNLLGLNSSGDSGAVANVISGNLGNGITLSGSSGNTVV 268          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI00131BBC9D (hypothetical protein n=1 Tax=unclassified Acidisoma TaxID=2634065 RepID=UPI00131BBC9D)

HSP 1 Score: 151 bits (381), Expect = 3.230e-39
Identity = 96/172 (55.81%), Postives = 120/172 (69.77%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSR-GTR--IEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCSGVVGNVISGNAGHGIVMRGATRNTVV 507
            SG GSLRAAI +AN++  GT+  I+FAVSGT+AL + LP I R   ID TTAPG+  GGAP + L+     GL FA G+  SQLLGV++ DA G GVTLD+  ITL  NY+GLN  G A GN G G+ VS  S+ + IG NPT  SGV+ NV+SGNAG+GIV+ G+  NT+V
Sbjct:   12 SGTGSLRAAIVAANAAPIGTQSTIDFAVSGTVALQSDLPPIARSVVIDATTAPGHQTGGAPSVELNCNGNAGLVFAPGSDNSQLLGVALGDASGNGVTLDSSAITLAGNYIGLNLQGTAFGNGGDGIHVSATSANDIIGSNPTAASGVISNVVSGNAGNGIVLDGSFGNTLV 183          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: A0A3C1DKL2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3C1DKL2_9ACTN)

HSP 1 Score: 134 bits (336), Expect = 2.670e-33
Identity = 82/170 (48.24%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    4 GPGSLRAAIASAN---SSRGTRIEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCSGVVGNVISGNAGHGIVMRGATRNTV 504
            G G+LRAAI + N   SS  T I FA +GT+ L   LPAI  +  IDGTTAPGY  GGAPV+ ++      LR   G+ GSQ+L +SV ++ G G+TL +   TLN NYVGL   G A GNRG G+ ++R +  N+IGLNPT     V NV+SGN G GI + G++ N +
Sbjct:   69 GGGTLRAAINAVNRQSSSTTTTITFAKAGTVKLKRDLPAIKNKVVIDGTTAPGYVTGGAPVVGINGNGHTTLRLDPGSGGSQILALSVTNSSGNGITLASGSNTLNYNYVGLTTGGKASGNRGDGIFLARTAKKNKIGLNPTNTPSAVANVVSGNRGAGIRLIGSSLNKI 238          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI001E4DBFEC (hypothetical protein n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E4DBFEC)

HSP 1 Score: 133 bits (335), Expect = 5.030e-33
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1
Query:    4 GPGSLRAAIASANSSRGTR--IEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCSGVVGNVISGNAGHGIVMRGATRNTVV 507
            GPGSLRAAI + NS+      I F V+G I L ++LP I +  T+DG TAPG+AA G P + ++ G   GL F+ G++GS + G+++ ++   G+TL++  ITLNANY+G++ DG+A GN   G+ V+  SSGN IGLNP      V NVISGN G+GI   G++ NTVV
Sbjct:   13 GPGSLRAAITALNSTNAASNSIVFTVAGEIVLASSLPTILKPVTLDGMTAPGFAALGVPTVEINFGGNSGLTFSGGSSGSAVFGLALGNSGSNGITLNSSDITLNANYIGIHADGSAFGNALDGIHVNSTSSGNLIGLNPESHPDTVTNVISGNGGNGIAFWGSSGNTVV 182          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: A0A1U7GFN1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 71-10 TaxID=1895807 RepID=A0A1U7GFN1_9BACT)

HSP 1 Score: 128 bits (322), Expect = 2.010e-31
Identity = 90/172 (52.33%), Postives = 111/172 (64.53%), Query Frame = 1
Query:    4 GPGSLRAAIASANSSRGT-RIEFAVSGTIALG-TALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAA-QGNRGPGVLVSRGSSGNRIGLNPTGCSGV--VGNVISGNAGHGIVMRGATRNTV 504
            GPGSLR AI  ANSS G   I+FAV GTI  G +ALPAIT  TTIDGT+APG+A  GAPV+ +D    RGLRFA GA GS L  +S+V + G GVTLDA  +T+  NY+GL  DG+    NRG GV ++ GS GN IG    G      + NVISGN G G+ + G + + +
Sbjct:   39 GPGSLRWAIVQANSSPGPDEIDFAVPGTIKAGRSALPAITGPTTIDGTSAPGFA--GAPVVTVDLQGARGLRFARGADGSTLSSLSIVRSGGDGVTLDASNVTVQGNYIGLLADGSTIAANRGDGVRINAGSRGNLIGREDPGTPQAFQLSNVISGNGGDGVGVYGGSDSRI 208          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: A0A521R5W9_9HYPH (Peptidase S53 domain-containing protein n=2 Tax=Reyranella TaxID=445219 RepID=A0A521R5W9_9HYPH)

HSP 1 Score: 123 bits (309), Expect = 1.670e-29
Identity = 84/181 (46.41%), Postives = 109/181 (60.22%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSRG---TRIEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTG---------CSGVVGNVISGNAGHGIVMRGATRNTVV 507
            SG GSLRAAI ++N+        IEF V+GTI L + LP++T+   I    A   A G  P + +D     GL FAAG+ GS+L+G+S+ +A G GVTL A GITLN NY+GL  +G+A GN G GV V+  SSGN +G NP            +GVV NVIS N G+GI + GA  N +V
Sbjct:   12 SGAGSLRAAIEASNAEPAGVTNTIEFTVTGTIVLASGLPSLTKPVDI---VAGNPATGNPPTVGIDFNGNAGLVFAAGSEGSELVGLSLGNAAGNGVTLHAGGITLNNNYIGLALNGSAAGNTGDGVFVAATSSGNNLGFNPEATTLAENGQPATGVVSNVISANGGNGITLNGADNNEIV 189          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI0013ECA1BF (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013ECA1BF)

HSP 1 Score: 105 bits (261), Expect = 4.360e-23
Identity = 67/138 (48.55%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSRGT-RIEFAVSGTIAL-GTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIG 408
            SG GSLR A+ SAN   GT  IEF V+GTI + G +LPA+T   T+DG+TAP +A  G PV+ +D G  RGLRF  G+ GS L  + ++ A   GVTL+A  +T+  N++GL  DG   GNRG G+ ++  S GN IG
Sbjct:   54 SGEGSLRWAMTSANDRPGTDTIEFRVAGTIRVAGRSLPALTGTVTLDGSTAPSFA--GTPVVTIDFGGTRGLRFEGGSDGSSLTSLVLIRAGNAGVTLNASHVTVQQNWIGLGADGRVAGNRGDGIRINASSQGNLIG 189          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI0018803F82 (hypothetical protein n=1 Tax=Synechocystis sp. LEGE 06083 TaxID=915336 RepID=UPI0018803F82)

HSP 1 Score: 99.0 bits (245), Expect = 9.920e-23
Identity = 76/166 (45.78%), Postives = 105/166 (63.25%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSRGTR-IEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAA----GAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDG-AAQGNRGPGVLVSRGSSGNRIGLNPTGCSGV--VGNVISGNAGHGI 474
            SG GSLR AI  AN + G   I FAV+G+I L +ALP I    TIDGTTAPG+   G P++A++     GL+F       AAGSQLLG+ ++D+   GVT++ D IT+  NY+G++ DG  A+GN+G G+ +   +S + IG   +  SG   + NVISGN G+GI
Sbjct:   12 SGAGSLRQAILDANLNPGADVISFAVTGSINLLSALPDIIDTLTIDGTTAPGF--DGNPLVAINFNNNPGLKFTNFNGNSAAGSQLLGLGIIDSSTNGVTVEVDNITIQGNYIGVDLDGQTARGNQGNGIFLGTQTSQHLIGTTSS-VSGQFQLSNVISGNQGNGI 174          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI001881AA75 (DUF4114 domain-containing protein n=3 Tax=Synechocystis TaxID=1142 RepID=UPI001881AA75)

HSP 1 Score: 103 bits (257), Expect = 1.500e-22
Identity = 78/176 (44.32%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSRGTR-IEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAA----GAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDG-AAQGNRGPGVLVSRGSSGNRIGLNPTGCSGV--VGNVISGNAGHGIVMRGATRNTV 504
            SG GSLR AI  AN + G   I FAV+G+I L +ALP I    TIDGTTAPG+   G P++A++     GL+F       AAGSQLLG+ ++D+   GVT++ D IT+  NY+G++ DG  A+GN+G G+ +   +S + IG   +  SG   + NVISGN G+GI + G+  N +
Sbjct:   12 SGAGSLRQAILDANLNPGADVISFAVTGSINLLSALPDIIDTLTIDGTTAPGF--DGNPLVAINFNNNPGLKFTNFNGNSAAGSQLLGLGIIDSSTNGVTVEVDNITIQGNYIGVDLDGQTARGNQGNGIFLGTQTSQHLIGTTSS-VSGQFQLSNVISGNQGNGIRLAGSANNRI 184          
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Match: UPI001665E1FE (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001665E1FE)

HSP 1 Score: 103 bits (257), Expect = 1.610e-22
Identity = 76/167 (45.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 SGPGSLRAAIASANSSRGT---RIEFAVSGTIALGTALPAITRRTTIDGTTAPGYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADGITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCS---------GVVGNVISGNAG 465
            SG GSLRAAI ++N++       IEF+VSGTI L + LP +T   +I    A   A G AP + +D     GL F  G+AGSQL+G+S+ +A G GVTL A  I LN NY+GL  DG A GN G G+ ++  SS N IG NP   +         GV+ NVIS N G
Sbjct:   12 SGEGSLRAAIEASNAAPPNVPNTIEFSVSGTILLASDLPHVTNTVSI---IAGDTATGNAPTVGIDFNQHAGLVFEPGSAGSQLIGLSLGNADGDGVTLSAGSILLNNNYIGLALDGTALGNSGDGISIAATSSANLIGYNPDAAALAAAGSPSAGVISNVISANGG 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126437.5324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358SQD2_9ACTN9.340e-4458.14Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
UPI00131BBC9D3.230e-3955.81hypothetical protein n=1 Tax=unclassified Acidisom... [more]
A0A3C1DKL2_9ACTN2.670e-3348.24Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
UPI001E4DBFEC5.030e-3347.65hypothetical protein n=2 Tax=Reyranella TaxID=4452... [more]
A0A1U7GFN1_9BACT2.010e-3152.33Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A521R5W9_9HYPH1.670e-2946.41Peptidase S53 domain-containing protein n=2 Tax=Re... [more]
UPI0013ECA1BF4.360e-2348.55right-handed parallel beta-helix repeat-containing... [more]
UPI0018803F829.920e-2345.78hypothetical protein n=1 Tax=Synechocystis sp. LEG... [more]
UPI001881AA751.500e-2244.32DUF4114 domain-containing protein n=3 Tax=Synechoc... [more]
UPI001665E1FE1.610e-2245.51right-handed parallel beta-helix repeat-containing... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126437contigM-pyrifera_M_contig126437:3..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score130.2
Seed ortholog evalue9.2e-28
Seed eggNOG ortholog1205680.CAKO01000027_gene4699
Hectar predicted targeting categoryother localisation
EggNOG free text desc.6-phosphogluconolactonase activity
EggNOG OGs1QUXB@1224,COG3210@1,COG3210@2,COG4625@1,COG4625@2,COG4934@1,COG4934@2
COG Functional cat.U
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.6252391-CDS-M-pyrifera_M_contig126437:2..5091622815778.6252391-CDS-M-pyrifera_M_contig126437:2..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126437 3..509 +
1692277565.1959505-CDS-M-pyrifera_M_contig126437:2..5091692277565.1959505-CDS-M-pyrifera_M_contig126437:2..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126437 3..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126437.5324.1prot_M-pyrifera_M_contig126437.5324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126437 3..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126437.5324.1

>prot_M-pyrifera_M_contig126437.5324.1 ID=prot_M-pyrifera_M_contig126437.5324.1|Name=mRNA_M-pyrifera_M_contig126437.5324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
SGPGSLRAAIASANSSRGTRIEFAVSGTIALGTALPAITRRTTIDGTTAP
GYAAGGAPVIALDNGARRGLRFAAGAAGSQLLGVSVVDARGPGVTLDADG
ITLNANYVGLNPDGAAQGNRGPGVLVSRGSSGNRIGLNPTGCSGVVGNVI
SGNAGHGIVMRGATRNTVV
back to top

mRNA from alignment at M-pyrifera_M_contig126437:3..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126437.5324.1 ID=mRNA_M-pyrifera_M_contig126437.5324.1|Name=mRNA_M-pyrifera_M_contig126437.5324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig126437:3..509+ (Macrocystis pyrifera P11B4 male)
TCCGGGCCGGGCTCGCTGCGCGCGGCCATCGCCAGTGCGAACTCGAGCCG GGGCACCCGCATCGAGTTCGCCGTGAGCGGGACGATCGCGCTCGGCACCG CGCTCCCCGCCATCACCCGGCGCACGACGATCGACGGGACCACCGCGCCC GGCTACGCGGCCGGAGGCGCACCCGTGATCGCGCTCGACAACGGCGCTCG CCGGGGGCTGCGCTTCGCGGCGGGGGCGGCGGGCTCGCAGCTGCTCGGGG TCTCGGTCGTCGACGCCCGGGGCCCCGGAGTGACCCTCGACGCCGATGGG ATCACGCTGAACGCGAACTACGTCGGCCTGAACCCCGACGGTGCCGCCCA GGGCAACCGCGGGCCGGGCGTCCTCGTGTCGCGCGGCTCCTCCGGGAATC GGATCGGGCTGAACCCGACCGGCTGCTCGGGCGTCGTCGGCAACGTGATC TCGGGGAACGCCGGGCACGGGATCGTCATGCGCGGGGCGACGCGCAACAC GGTGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126437:3..509+

>mRNA_M-pyrifera_M_contig126437.5324.1 ID=mRNA_M-pyrifera_M_contig126437.5324.1|Name=mRNA_M-pyrifera_M_contig126437.5324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig126437:3..509+ (Macrocystis pyrifera P11B4 male)
TCCGGGCCGGGCTCGCTGCGCGCGGCCATCGCCAGTGCGAACTCGAGCCG
GGGCACCCGCATCGAGTTCGCCGTGAGCGGGACGATCGCGCTCGGCACCG
CGCTCCCCGCCATCACCCGGCGCACGACGATCGACGGGACCACCGCGCCC
GGCTACGCGGCCGGAGGCGCACCCGTGATCGCGCTCGACAACGGCGCTCG
CCGGGGGCTGCGCTTCGCGGCGGGGGCGGCGGGCTCGCAGCTGCTCGGGG
TCTCGGTCGTCGACGCCCGGGGCCCCGGAGTGACCCTCGACGCCGATGGG
ATCACGCTGAACGCGAACTACGTCGGCCTGAACCCCGACGGTGCCGCCCA
GGGCAACCGCGGGCCGGGCGTCCTCGTGTCGCGCGGCTCCTCCGGGAATC
GGATCGGGCTGAACCCGACCGGCTGCTCGGGCGTCGTCGGCAACGTGATC
TCGGGGAACGCCGGGCACGGGATCGTCATGCGCGGGGCGACGCGCAACAC
GGTGGTGTCCGGGCCGGGCTCGCTGCGCGCGGCCATCGCCAGTGCGAACT
CGAGCCGGGGCACCCGCATCGAGTTCGCCGTGAGCGGGACGATCGCGCTC
GGCACCGCGCTCCCCGCCATCACCCGGCGCACGACGATCGACGGGACCAC
CGCGCCCGGCTACGCGGCCGGAGGCGCACCCGTGATCGCGCTCGACAACG
GCGCTCGCCGGGGGCTGCGCTTCGCGGCGGGGGCGGCGGGCTCGCAGCTG
CTCGGGGTCTCGGTCGTCGACGCCCGGGGCCCCGGAGTGACCCTCGACGC
CGATGGGATCACGCTGAACGCGAACTACGTCGGCCTGAACCCCGACGGTG
CCGCCCAGGGCAACCGCGGGCCGGGCGTCCTCGTGTCGCGCGGCTCCTCC
GGGAATCGGATCGGGCTGAACCCGACCGGCTGCTCGGGCGTCGTCGGCAA
CGTGATCTCGGGGAACGCCGGGCACGGGATCGTCATGCGCGGGGCGACGC
GCAACACGGTGGTG
back to top