mRNA_M-pyrifera_M_contig126157.5274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126157.5274.1
Unique NamemRNA_M-pyrifera_M_contig126157.5274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A3D5DGF7_9GAMM (Ammonium transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGF7_9GAMM)

HSP 1 Score: 235 bits (600), Expect = 9.890e-74
Identity = 118/152 (77.63%), Postives = 136/152 (89.47%), Query Frame = 1
Query:    4 ISTFLMLSV--CGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            + TFLML++  C NA AD L+SGDTAW+LTSTALVLFMTLPGLALFYGGLVR+KNALSVLMQCF + CLMS+ WL+ GYGLAFGDGG L ++IGLGN MLS+V+R+AV GT+P+SVFVMFQMTFAVITPALIVGAF ERMRF+AVLLFS+ W
Sbjct:    7 VMTFLMLAIGCCANASADDLNSGDTAWLLTSTALVLFMTLPGLALFYGGLVRSKNALSVLMQCFTVGCLMSMAWLIVGYGLAFGDGGDLQRFIGLGNIMLSEVSRDAVHGTIPKSVFVMFQMTFAVITPALIVGAFVERMRFSAVLLFSLFW 158          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A523P505_9PROT (Ammonium transporter (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P505_9PROT)

HSP 1 Score: 229 bits (584), Expect = 1.920e-72
Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = 1
Query:   13 FLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            FL + +C +  A  +DSGDTAW+LTST LVLFMTLPGLALFY GLVR KN LSVLMQCFA+ CLMSL+WLVAGYGLAFGDGG+  + IGLGN MLSDVTR AV+GT+PESVFVMFQMTFA+ITPALI+GAFAERMRF+AVLLFS LW
Sbjct:   12 FLTVGLCVDVHAAAIDSGDTAWLLTSTVLVLFMTLPGLALFYAGLVRTKNVLSVLMQCFALACLMSLVWLVAGYGLAFGDGGTWQKIIGLGNIMLSDVTRGAVNGTIPESVFVMFQMTFAIITPALIIGAFAERMRFSAVLLFSTLW 158          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A661BZA4_9GAMM (Ammonia channel protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BZA4_9GAMM)

HSP 1 Score: 215 bits (547), Expect = 2.920e-68
Identity = 107/152 (70.39%), Postives = 135/152 (88.82%), Query Frame = 1
Query:    1 IISTFLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIG-LGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            +++  ++L +   AQAD LD+GDTAW+LTSTALVLFMTLPGLALFYGGLVRAKN LSVLMQCFAI C++S+LW++ GY L+FGDGGS+N +IG L N  L++VTR+++SGT+PESVFVMFQMTFA+ITPALI+G FAERM+F+A+LLFSV+W
Sbjct:    7 MVTAVMLLLLPVVAQADTLDTGDTAWILTSTALVLFMTLPGLALFYGGLVRAKNVLSVLMQCFAIACIVSILWVIYGYSLSFGDGGSMNAWIGGLDNAFLANVTRDSLSGTLPESVFVMFQMTFAIITPALIIGGFAERMKFSAMLLFSVIW 158          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A382SLZ4_9ZZZZ (Ammonium_transp domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382SLZ4_9ZZZZ)

HSP 1 Score: 210 bits (534), Expect = 3.150e-65
Identity = 104/136 (76.47%), Postives = 121/136 (88.97%), Query Frame = 1
Query:   46 ADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            AD LD+GDTAW+L STALVLFMTLPGLALFY GLVRAKN LSVLMQCFAI CL+S+LW+V  YGLAFGDGGS+NQ +GLGN M+SDV  +++SGT+PE VF MFQMTFA+ITPALI+G FAERM+F++VLLFS LW
Sbjct:   21 ADELDTGDTAWILVSTALVLFMTLPGLALFYSGLVRAKNVLSVLMQCFAIACLVSILWMVFVYGLAFGDGGSVNQIVGLGNLMISDVGMDSMSGTIPEIVFFMFQMTFAIITPALIIGGFAERMKFSSVLLFSALW 156          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A849MJ29_9PROT (Ammonium transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MJ29_9PROT)

HSP 1 Score: 213 bits (542), Expect = 4.420e-65
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   13 FLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            F++  + G   AD L++GDTAW+LTSTALVLFMTLPGLALFY GLVRAKN LSVLMQCFAI CL+S+LWL+  YGLAFGDGGSLNQ+IGLGN M S VT +A++GT+PE VF MFQMTFA+ITPALIVG FAERM+F+AVL FS +W
Sbjct:    7 FILAMLPGVVFADELNTGDTAWILTSTALVLFMTLPGLALFYSGLVRAKNVLSVLMQCFAIACLVSILWLIGVYGLAFGDGGSLNQFIGLGNIMASAVTVDAMNGTIPEVVFFMFQMTFAIITPALIVGGFAERMKFSAVLWFSAIW 153          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A2A5G8X7_9GAMM (Ammonium transporter n=2 Tax=root TaxID=1 RepID=A0A2A5G8X7_9GAMM)

HSP 1 Score: 213 bits (541), Expect = 7.090e-65
Identity = 108/152 (71.05%), Postives = 132/152 (86.84%), Query Frame = 1
Query:    1 IISTFLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIG-LGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            IIS  ++L +   AQADGLDSGDTAW+LTSTALVLFMTLPGLALFYGGLVR KN LSVLMQCF I C++S++W+V GY L+FG GGS+N +IG L N  L++VTR+++SGT+PES FVMFQMTFA+ITPALIVG FAERM+F+++LLFSV+W
Sbjct:    7 IISACVLLLIPVIAQADGLDSGDTAWILTSTALVLFMTLPGLALFYGGLVRTKNVLSVLMQCFMIACVVSIIWVVYGYSLSFGHGGSMNAWIGGLDNAFLANVTRDSLSGTLPESTFVMFQMTFAIITPALIVGGFAERMKFSSMLLFSVIW 158          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A3B0W4R3_9ZZZZ (Ammonium transporter n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0W4R3_9ZZZZ)

HSP 1 Score: 211 bits (537), Expect = 3.030e-64
Identity = 104/139 (74.82%), Postives = 127/139 (91.37%), Query Frame = 1
Query:   40 AQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIG-LGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            A+A+G+DSGDTAW+LTSTALVLFMTLPGLALFYGGLVR KN LSVLMQCF I C++S+LW+V GY L+FGDGGS+N ++G L N  L++VTRE++SGT+PESVFVMFQMTFA+ITPALI+G FAERM+F+++LLFSVLW
Sbjct:   23 ARAEGVDSGDTAWILTSTALVLFMTLPGLALFYGGLVRTKNVLSVLMQCFMIACVVSILWVVYGYSLSFGDGGSMNAWVGGLDNAFLANVTRESLSGTLPESVFVMFQMTFAIITPALIIGGFAERMKFSSMLLFSVLW 161          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A7C5KZJ3_9GAMM (Ammonium transporter n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A7C5KZJ3_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 7.350e-64
Identity = 104/139 (74.82%), Postives = 126/139 (90.65%), Query Frame = 1
Query:   40 AQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIG-LGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            AQA+G DSGDTAW+LTSTALVLFMTLPGLALFYGGLVRAKN LSVLMQCF I C++S++W+V GY L+FGDGGS+N +IG L N  L++VTR+++SGT+PES FVMFQMTFA+ITPALI+G FAER++F+A+LLFSVLW
Sbjct:   17 AQAEGSDSGDTAWILTSTALVLFMTLPGLALFYGGLVRAKNVLSVLMQCFVIACVVSIIWVVYGYSLSFGDGGSMNAWIGGLDNAFLANVTRDSLSGTLPESAFVMFQMTFAIITPALIIGGFAERIKFSAMLLFSVLW 155          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A2E6HNJ1_9GAMM (Ammonium transporter n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E6HNJ1_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 9.650e-64
Identity = 104/147 (70.75%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   13 FLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            F+ +     A AD L+SGDTAW+LTSTALVLFMTLPGLALFY GLVRAKN LSVLMQCF+I CL+S+LW+V GYGLAFGDGGS+NQ +GLGN M+SDV  ++ SGT+PE +F MFQMTFA+ITPAL+VG FAERM+F++VL F+ LW
Sbjct:   21 FITMFAPSLALADELNSGDTAWILTSTALVLFMTLPGLALFYSGLVRAKNVLSVLMQCFSIACLVSILWMVFGYGLAFGDGGSINQIVGLGNIMISDVGLDSASGTIPEILFFMFQMTFAIITPALVVGGFAERMKFSSVLWFTALW 167          
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Match: A0A1Z9UCI0_9GAMM (Ammonium transporter n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UCI0_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 1.010e-63
Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 1
Query:    1 IISTFLMLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNALSVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREAVSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW 453
            +I  FL+L     A ADGLDSGD AW+LTSTALVLFMT+PGLALFYGGLVR+KNALSVLMQCF + C+ SLLW+ AGYGLAFG+GG+ N Y G G  MLS VTREA+SGT+PE+VFVMFQMT A+ITPALIVG FAERM+F+A+L+FS  W
Sbjct:    6 LIVIFLLLPSV--AFADGLDSGDGAWLLTSTALVLFMTIPGLALFYGGLVRSKNALSVLMQCFTLTCVTSLLWVFAGYGLAFGNGGAWNDYXGGGXVMLSXVTREAMSGTIPETVFVMFQMTXAIITPALIVGGFAERMKFSAILVFSCXW 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126157.5274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGF7_9GAMM9.890e-7477.63Ammonium transporter n=1 Tax=Gammaproteobacteria b... [more]
A0A523P505_9PROT1.920e-7278.23Ammonium transporter (Fragment) n=1 Tax=Proteobact... [more]
A0A661BZA4_9GAMM2.920e-6870.39Ammonia channel protein (Fragment) n=1 Tax=Gammapr... [more]
A0A382SLZ4_9ZZZZ3.150e-6576.47Ammonium_transp domain-containing protein (Fragmen... [more]
A0A849MJ29_9PROT4.420e-6573.47Ammonium transporter n=1 Tax=Proteobacteria bacter... [more]
A0A2A5G8X7_9GAMM7.090e-6571.05Ammonium transporter n=2 Tax=root TaxID=1 RepID=A0... [more]
A0A3B0W4R3_9ZZZZ3.030e-6474.82Ammonium transporter n=1 Tax=hydrothermal vent met... [more]
A0A7C5KZJ3_9GAMM7.350e-6474.82Ammonium transporter n=2 Tax=Proteobacteria TaxID=... [more]
A0A2E6HNJ1_9GAMM9.650e-6470.75Ammonium transporter n=1 Tax=Legionellales bacteri... [more]
A0A1Z9UCI0_9GAMM1.010e-6372.19Ammonium transporter n=3 Tax=Gammaproteobacteria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126157contigM-pyrifera_M_contig126157:9..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score194.1
Seed ortholog evalue4.5e-47
Seed eggNOG ortholog236097.ADG881_1586
Preferred nameamtB
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ammonium transporter
EggNOG OGs1NR9F@1224,1RNKF@1236,1XN3Q@135619,COG0004@1,COG0004@2
COG Functional cat.P
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size453
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.446841-CDS-M-pyrifera_M_contig126157:8..4431622815776.446841-CDS-M-pyrifera_M_contig126157:8..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126157 9..443 -
1692277564.241066-CDS-M-pyrifera_M_contig126157:8..4431692277564.241066-CDS-M-pyrifera_M_contig126157:8..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126157 9..443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.4580932-UTR-M-pyrifera_M_contig126157:443..4611622815776.4580932-UTR-M-pyrifera_M_contig126157:443..461Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126157 444..461 -
1692277564.254358-UTR-M-pyrifera_M_contig126157:443..4611692277564.254358-UTR-M-pyrifera_M_contig126157:443..461Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126157 444..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126157.5274.1prot_M-pyrifera_M_contig126157.5274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126157 9..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126157.5274.1

>prot_M-pyrifera_M_contig126157.5274.1 ID=prot_M-pyrifera_M_contig126157.5274.1|Name=mRNA_M-pyrifera_M_contig126157.5274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MLSVCGNAQADGLDSGDTAWMLTSTALVLFMTLPGLALFYGGLVRAKNAL
SVLMQCFAICCLMSLLWLVAGYGLAFGDGGSLNQYIGLGNFMLSDVTREA
VSGTMPESVFVMFQMTFAVITPALIVGAFAERMRFAAVLLFSVLW
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mRNA from alignment at M-pyrifera_M_contig126157:9..461-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126157.5274.1 ID=mRNA_M-pyrifera_M_contig126157.5274.1|Name=mRNA_M-pyrifera_M_contig126157.5274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig126157:9..461- (Macrocystis pyrifera P11B4 male)
ATCATTTCGACTTTTCTCATGCTTAGCGTGTGTGGCAACGCACAGGCCGA CGGCCTGGACAGCGGTGACACGGCGTGGATGCTGACATCGACAGCATTGG TACTGTTCATGACCCTTCCGGGTCTGGCCCTGTTCTACGGCGGGCTCGTG CGCGCGAAAAATGCACTATCGGTGTTGATGCAGTGTTTCGCCATCTGCTG CCTGATGTCGCTGTTGTGGTTGGTCGCGGGTTACGGTCTCGCGTTCGGCG ACGGCGGTTCGCTCAACCAGTACATCGGGCTCGGTAATTTCATGCTGTCG GACGTCACCCGCGAGGCGGTCAGTGGCACGATGCCGGAATCCGTTTTCGT CATGTTCCAGATGACATTCGCGGTGATCACGCCGGCGCTCATTGTTGGTG CATTTGCCGAGCGCATGCGTTTCGCGGCCGTCCTGCTGTTTAGCGTGCTG TGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126157:9..461-

>mRNA_M-pyrifera_M_contig126157.5274.1 ID=mRNA_M-pyrifera_M_contig126157.5274.1|Name=mRNA_M-pyrifera_M_contig126157.5274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig126157:9..461- (Macrocystis pyrifera P11B4 male)
ATGCTTAGCGTGTGTGGCAACGCACAGGCCGACGGCCTGGACAGCGGTGA
CACGGCGTGGATGCTGACATCGACAGCATTGGTACTGTTCATGACCCTTC
CGGGTCTGGCCCTGTTCTACGGCGGGCTCGTGCGCGCGAAAAATGCACTA
TCGGTGTTGATGCAGTGTTTCGCCATCTGCTGCCTGATGTCGCTGTTGTG
GTTGGTCGCGGGTTACGGTCTCGCGTTCGGCGACGGCGGTTCGCTCAACC
AGTACATCGGGCTCGGTAATTTCATGCTGTCGGACGTCACCCGCGAGGCG
GTCAGTGGCACGATGCCGGAATCCGTTTTCGTCATGTTCCAGATGACATT
CGCGGTGATCACGCCGGCGCTCATTGTTGGTGCATTTGCCGAGCGCATGC
GTTTCGCGGCCGTCCTGCTGTTTAGCGTGCTGTGGATGCTTAGCGTGTGT
GGCAACGCACAGGCCGACGGCCTGGACAGCGGTGACACGGCGTGGATGCT
GACATCGACAGCATTGGTACTGTTCATGACCCTTCCGGGTCTGGCCCTGT
TCTACGGCGGGCTCGTGCGCGCGAAAAATGCACTATCGGTGTTGATGCAG
TGTTTCGCCATCTGCTGCCTGATGTCGCTGTTGTGGTTGGTCGCGGGTTA
CGGTCTCGCGTTCGGCGACGGCGGTTCGCTCAACCAGTACATCGGGCTCG
GTAATTTCATGCTGTCGGACGTCACCCGCGAGGCGGTCAGTGGCACGATG
CCGGAATCCGTTTTCGTCATGTTCCAGATGACATTCGCGGTGATCACGCC
GGCGCTCATTGTTGGTGCATTTGCCGAGCGCATGCGTTTCGCGGCCGTCC
TGCTGTTTAGCGTGCTGTGG
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