mRNA_M-pyrifera_M_contig125720.5197.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A7X3Y786_9PROT (Thermonuclease family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X3Y786_9PROT) HSP 1 Score: 77.0 bits (188), Expect = 3.750e-15 Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 19 ATGWSVLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
A G ++ +PA++LA + G A V+DGD+L + + IRLHGIDAPE RQTC++ R CG A RA+ +++G NPVRC
Sbjct: 25 AVGIALTVPAVSLAGTEV----ISGEARVIDGDTLEVADRRIRLHGIDAPETRQTCLRHGRRWACGKAATRAMRRLVGRNPVRC 104
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A7X4C000_9PROT (Thermonuclease family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X4C000_9PROT) HSP 1 Score: 75.1 bits (183), Expect = 4.470e-15 Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 34 VLLPALALAT----LTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPR-RCGIEALRALEQMIGTNPVRC 270
V + ALA+A L A E G A VLDGD++ +G Q IRLHGIDAPE QTC+ R RCG A RAL ++ +NPVRC
Sbjct: 7 VAICALAVAAIGPGLVAQHPETSGSAHVLDGDTIDLGGQRIRLHGIDAPEADQTCLDANRQLYRCGAVATRALAALVSSNPVRC 90
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A653SED2_9CAUL (Nuclease n=1 Tax=Brevundimonas sp. G8 TaxID=1350776 RepID=A0A653SED2_9CAUL) HSP 1 Score: 74.3 bits (181), Expect = 1.010e-14 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 76 AAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
AA L GRA V+DGD+L IG Q +RL G+DAPE RQ+C++ + RCG EA R L+++I PV C
Sbjct: 17 AAPLIGRATVIDGDTLEIGGQRVRLWGVDAPEGRQSCLRDGQAYRCGTEAARHLDRLINDRPVTC 81
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1Z4JRH9_LEPBY (TNase-like domain-containing protein n=2 Tax=Leptolyngbya boryana TaxID=1184 RepID=A0A1Z4JRH9_LEPBY) HSP 1 Score: 73.6 bits (179), Expect = 1.590e-14 Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 70 AHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
A AA+L+G A V+DGD+L I Q IRLHGIDAPE RQTC + RCG A AL++ IG V C
Sbjct: 18 AQAADLKGTASVIDGDTLEIHDQRIRLHGIDAPEGRQTCTLKGKAWRCGQAATLALQEKIGNQTVTC 84
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI0018C2B0E6 (thermonuclease family protein n=1 Tax=Methylocystis sp. H4A TaxID=2785788 RepID=UPI0018C2B0E6) HSP 1 Score: 73.6 bits (179), Expect = 1.740e-14 Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 79 AELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQG-ERPRRCGIEALRALEQMIGTNPVRC 270
A++ GRA V+DGD++ I Q IRLHG+DAPE RQ C +P RCG EA AL++ +G +PV C
Sbjct: 20 ADIVGRASVIDGDTIEIHGQRIRLHGVDAPEKRQPCFDAANQPYRCGQEAAMALDEFVGQSPVSC 84
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1G5BZI8_9HYPH (Endonuclease YncB, thermonuclease family n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5BZI8_9HYPH) HSP 1 Score: 73.6 bits (179), Expect = 1.930e-14 Identity = 45/95 (47.37%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 1 RLNRRSATGWSVLLPALALAT-----LTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
R R A G L+ ALALA L + L GRA V DGD++RIG IRL GIDAPE QTC + R RCG A RAL M+ V+C
Sbjct: 2 RRRRSKAKGLQSLVIALALAAGSVVVLKPNERSLEGRAQVTDGDTIRIGEARIRLKGIDAPEMEQTCSRAGRSYRCGDMARRALIDMVSGENVQC 96
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1I4ENJ1_9RHOB (Endonuclease YncB, thermonuclease family n=2 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4ENJ1_9RHOB) HSP 1 Score: 74.3 bits (181), Expect = 2.480e-14 Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 76 AAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQ-GERPRRCGIEALRALEQMIGTNPVRC 270
AA++ GRA V+DGD+L+IG+ IRLHGIDAPE QTC+ G CG+ A RA++ +IGT+ V C
Sbjct: 17 AADISGRARVIDGDTLQIGQTRIRLHGIDAPEASQTCLDTGGVAAACGLAATRAMQVLIGTDTVHC 82
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A2L0GMD4_9SPHN (TNase-like domain-containing protein n=1 Tax=Porphyrobacter sp. HT-58-2 TaxID=2023229 RepID=A0A2L0GMD4_9SPHN) HSP 1 Score: 74.3 bits (181), Expect = 3.510e-14 Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 58 ATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
A TA A + G A+V+DGDSLR+G E+RL G+DAPE+ QTC P CGI A ALE MIG + C
Sbjct: 18 APATAKANVIEGTAEVIDGDSLRVGGSEVRLFGVDAPEFTQTCYSDGAPVACGIMAKEALEGMIGGGRLVC 88
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI001EFB6EFE (thermonuclease family protein n=1 Tax=Methylocystis sp. (strain SB2) TaxID=743836 RepID=UPI001EFB6EFE) HSP 1 Score: 72.8 bits (177), Expect = 3.610e-14 Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 34 VLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQG-ERPRRCGIEALRALEQMIGTNPVRC 270
+++ LA ++ A++ GRA V+DGD++ I Q IRLHGIDAPE Q C G ++P CG A AL++ IG +PV C
Sbjct: 8 IIITILAATISSSALADIVGRASVIDGDTIEIHAQRIRLHGIDAPEKGQPCFDGADQPYNCGQRAAMALDEFIGQSPVSC 87
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI001EF6DDF4 (thermonuclease family protein n=1 Tax=Microvirga sp. ACRRW TaxID=2918205 RepID=UPI001EF6DDF4) HSP 1 Score: 72.8 bits (177), Expect = 4.010e-14 Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 1 RLNRRSATGWSVLLPALALA-----TLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
R R A+G L+ ALALA L + L GRA V DGD++RIG +IR+ GIDAPE QTC + R RCG A RAL M+ V+C
Sbjct: 4 RRRRSKASGIQSLIIALALAGGSALVLKPNERGLEGRAQVTDGDTIRIGDAKIRIKGIDAPEMEQTCFRAGRSYRCGDVARRALIDMVSGENVQC 98 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125720.5197.1 >prot_M-pyrifera_M_contig125720.5197.1 ID=prot_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp RLNRRSATGWSVLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRLback to top mRNA from alignment at M-pyrifera_M_contig125720:12..281- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125720.5197.1 ID=mRNA_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig125720:12..281- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125720:12..281- >mRNA_M-pyrifera_M_contig125720.5197.1 ID=mRNA_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig125720:12..281- (Macrocystis pyrifera P11B4 male)back to top |