mRNA_M-pyrifera_M_contig125720.5197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125720.5197.1
Unique NamemRNA_M-pyrifera_M_contig125720.5197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A7X3Y786_9PROT (Thermonuclease family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X3Y786_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 3.750e-15
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   19 ATGWSVLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            A G ++ +PA++LA        + G A V+DGD+L +  + IRLHGIDAPE RQTC++  R   CG  A RA+ +++G NPVRC
Sbjct:   25 AVGIALTVPAVSLAGTEV----ISGEARVIDGDTLEVADRRIRLHGIDAPETRQTCLRHGRRWACGKAATRAMRRLVGRNPVRC 104          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A7X4C000_9PROT (Thermonuclease family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X4C000_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 4.470e-15
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   34 VLLPALALAT----LTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPR-RCGIEALRALEQMIGTNPVRC 270
            V + ALA+A     L A   E  G A VLDGD++ +G Q IRLHGIDAPE  QTC+   R   RCG  A RAL  ++ +NPVRC
Sbjct:    7 VAICALAVAAIGPGLVAQHPETSGSAHVLDGDTIDLGGQRIRLHGIDAPEADQTCLDANRQLYRCGAVATRALAALVSSNPVRC 90          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A653SED2_9CAUL (Nuclease n=1 Tax=Brevundimonas sp. G8 TaxID=1350776 RepID=A0A653SED2_9CAUL)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   76 AAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            AA L GRA V+DGD+L IG Q +RL G+DAPE RQ+C++  +  RCG EA R L+++I   PV C
Sbjct:   17 AAPLIGRATVIDGDTLEIGGQRVRLWGVDAPEGRQSCLRDGQAYRCGTEAARHLDRLINDRPVTC 81          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1Z4JRH9_LEPBY (TNase-like domain-containing protein n=2 Tax=Leptolyngbya boryana TaxID=1184 RepID=A0A1Z4JRH9_LEPBY)

HSP 1 Score: 73.6 bits (179), Expect = 1.590e-14
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   70 AHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            A AA+L+G A V+DGD+L I  Q IRLHGIDAPE RQTC    +  RCG  A  AL++ IG   V C
Sbjct:   18 AQAADLKGTASVIDGDTLEIHDQRIRLHGIDAPEGRQTCTLKGKAWRCGQAATLALQEKIGNQTVTC 84          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI0018C2B0E6 (thermonuclease family protein n=1 Tax=Methylocystis sp. H4A TaxID=2785788 RepID=UPI0018C2B0E6)

HSP 1 Score: 73.6 bits (179), Expect = 1.740e-14
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   79 AELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQG-ERPRRCGIEALRALEQMIGTNPVRC 270
            A++ GRA V+DGD++ I  Q IRLHG+DAPE RQ C     +P RCG EA  AL++ +G +PV C
Sbjct:   20 ADIVGRASVIDGDTIEIHGQRIRLHGVDAPEKRQPCFDAANQPYRCGQEAAMALDEFVGQSPVSC 84          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1G5BZI8_9HYPH (Endonuclease YncB, thermonuclease family n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5BZI8_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 1.930e-14
Identity = 45/95 (47.37%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    1 RLNRRSATGWSVLLPALALAT-----LTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            R  R  A G   L+ ALALA      L  +   L GRA V DGD++RIG   IRL GIDAPE  QTC +  R  RCG  A RAL  M+    V+C
Sbjct:    2 RRRRSKAKGLQSLVIALALAAGSVVVLKPNERSLEGRAQVTDGDTIRIGEARIRLKGIDAPEMEQTCSRAGRSYRCGDMARRALIDMVSGENVQC 96          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A1I4ENJ1_9RHOB (Endonuclease YncB, thermonuclease family n=2 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4ENJ1_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 2.480e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   76 AAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQ-GERPRRCGIEALRALEQMIGTNPVRC 270
            AA++ GRA V+DGD+L+IG+  IRLHGIDAPE  QTC+  G     CG+ A RA++ +IGT+ V C
Sbjct:   17 AADISGRARVIDGDTLQIGQTRIRLHGIDAPEASQTCLDTGGVAAACGLAATRAMQVLIGTDTVHC 82          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: A0A2L0GMD4_9SPHN (TNase-like domain-containing protein n=1 Tax=Porphyrobacter sp. HT-58-2 TaxID=2023229 RepID=A0A2L0GMD4_9SPHN)

HSP 1 Score: 74.3 bits (181), Expect = 3.510e-14
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   58 ATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            A  TA A  + G A+V+DGDSLR+G  E+RL G+DAPE+ QTC     P  CGI A  ALE MIG   + C
Sbjct:   18 APATAKANVIEGTAEVIDGDSLRVGGSEVRLFGVDAPEFTQTCYSDGAPVACGIMAKEALEGMIGGGRLVC 88          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI001EFB6EFE (thermonuclease family protein n=1 Tax=Methylocystis sp. (strain SB2) TaxID=743836 RepID=UPI001EFB6EFE)

HSP 1 Score: 72.8 bits (177), Expect = 3.610e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   34 VLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQG-ERPRRCGIEALRALEQMIGTNPVRC 270
            +++  LA    ++  A++ GRA V+DGD++ I  Q IRLHGIDAPE  Q C  G ++P  CG  A  AL++ IG +PV C
Sbjct:    8 IIITILAATISSSALADIVGRASVIDGDTIEIHAQRIRLHGIDAPEKGQPCFDGADQPYNCGQRAAMALDEFIGQSPVSC 87          
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Match: UPI001EF6DDF4 (thermonuclease family protein n=1 Tax=Microvirga sp. ACRRW TaxID=2918205 RepID=UPI001EF6DDF4)

HSP 1 Score: 72.8 bits (177), Expect = 4.010e-14
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 RLNRRSATGWSVLLPALALA-----TLTAHAAELRGRADVLDGDSLRIGRQEIRLHGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC 270
            R  R  A+G   L+ ALALA      L  +   L GRA V DGD++RIG  +IR+ GIDAPE  QTC +  R  RCG  A RAL  M+    V+C
Sbjct:    4 RRRRSKASGIQSLIIALALAGGSALVLKPNERGLEGRAQVTDGDTIRIGDAKIRIKGIDAPEMEQTCFRAGRSYRCGDVARRALIDMVSGENVQC 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125720.5197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3Y786_9PROT3.750e-1546.43Thermonuclease family protein n=1 Tax=Alphaproteob... [more]
A0A7X4C000_9PROT4.470e-1551.19Thermonuclease family protein n=1 Tax=Alphaproteob... [more]
A0A653SED2_9CAUL1.010e-1453.85Nuclease n=1 Tax=Brevundimonas sp. G8 TaxID=135077... [more]
A0A1Z4JRH9_LEPBY1.590e-1455.22TNase-like domain-containing protein n=2 Tax=Lepto... [more]
UPI0018C2B0E61.740e-1452.31thermonuclease family protein n=1 Tax=Methylocysti... [more]
A0A1G5BZI8_9HYPH1.930e-1447.37Endonuclease YncB, thermonuclease family n=1 Tax=M... [more]
A0A1I4ENJ1_9RHOB2.480e-1454.55Endonuclease YncB, thermonuclease family n=2 Tax=L... [more]
A0A2L0GMD4_9SPHN3.510e-1452.11TNase-like domain-containing protein n=1 Tax=Porph... [more]
UPI001EFB6EFE3.610e-1445.00thermonuclease family protein n=1 Tax=Methylocysti... [more]
UPI001EF6DDF44.010e-1446.32thermonuclease family protein n=1 Tax=Microvirga s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125720contigM-pyrifera_M_contig125720:12..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.8
Seed ortholog evalue9.3e-11
Seed eggNOG ortholog272134.KB731326_gene78
Preferred nameexoI2
KEGG koko:K16561
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nuclease
EggNOG OGsCOG1525@1,COG1525@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.7553945-CDS-M-pyrifera_M_contig125720:11..2811622815772.7553945-CDS-M-pyrifera_M_contig125720:11..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125720 12..281 -
1692277562.450495-CDS-M-pyrifera_M_contig125720:11..2811692277562.450495-CDS-M-pyrifera_M_contig125720:11..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125720 12..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125720.5197.1prot_M-pyrifera_M_contig125720.5197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125720 12..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125720.5197.1

>prot_M-pyrifera_M_contig125720.5197.1 ID=prot_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
RLNRRSATGWSVLLPALALATLTAHAAELRGRADVLDGDSLRIGRQEIRL
HGIDAPEYRQTCVQGERPRRCGIEALRALEQMIGTNPVRC
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mRNA from alignment at M-pyrifera_M_contig125720:12..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125720.5197.1 ID=mRNA_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig125720:12..281- (Macrocystis pyrifera P11B4 male)
CGCTTGAATCGCCGATCGGCGACCGGCTGGAGTGTCCTGCTGCCGGCTCT TGCGCTCGCGACGCTGACAGCCCATGCCGCCGAACTTCGTGGCCGCGCGG ACGTCCTCGATGGCGACAGCCTGCGGATCGGCCGGCAGGAAATCCGGCTG CACGGAATCGACGCGCCGGAATACCGGCAGACCTGCGTCCAGGGTGAGCG TCCGCGTCGTTGCGGAATCGAGGCGCTGCGCGCGCTCGAACAAATGATCG GCACGAATCCCGTGCGCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125720:12..281-

>mRNA_M-pyrifera_M_contig125720.5197.1 ID=mRNA_M-pyrifera_M_contig125720.5197.1|Name=mRNA_M-pyrifera_M_contig125720.5197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig125720:12..281- (Macrocystis pyrifera P11B4 male)
CGCTTGAATCGCCGATCGGCGACCGGCTGGAGTGTCCTGCTGCCGGCTCT
TGCGCTCGCGACGCTGACAGCCCATGCCGCCGAACTTCGTGGCCGCGCGG
ACGTCCTCGATGGCGACAGCCTGCGGATCGGCCGGCAGGAAATCCGGCTG
CACGGAATCGACGCGCCGGAATACCGGCAGACCTGCGTCCAGGGTGAGCG
TCCGCGTCGTTGCGGAATCGAGGCGCTGCGCGCGCTCGAACAAATGATCG
GCACGAATCCCGTGCGCTGCCGCTTGAATCGCCGATCGGCGACCGGCTGG
AGTGTCCTGCTGCCGGCTCTTGCGCTCGCGACGCTGACAGCCCATGCCGC
CGAACTTCGTGGCCGCGCGGACGTCCTCGATGGCGACAGCCTGCGGATCG
GCCGGCAGGAAATCCGGCTGCACGGAATCGACGCGCCGGAATACCGGCAG
ACCTGCGTCCAGGGTGAGCGTCCGCGTCGTTGCGGAATCGAGGCGCTGCG
CGCGCTCGAACAAATGATCGGCACGAATCCCGTGCGCTGC
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