mRNA_M-pyrifera_M_contig1256.5180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1256.5180.1
Unique NamemRNA_M-pyrifera_M_contig1256.5180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A6H5JJQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ2_9PHAE)

HSP 1 Score: 582 bits (1500), Expect = 7.140e-198
Identity = 378/678 (55.75%), Postives = 439/678 (64.75%), Query Frame = 1
Query:   34 QSLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQ------REGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGXXXXXXGLGPAM-QECIGTFELAVGAIGVREPAMWVRYASFLKRRLESGQGGVGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQVLARAVETHLC---VSSDSPALATTGARKQAASVTAAGGGAAGAELAHRAAVESLAEDA----EDAREALSAGLADVLLAMGKPDSALEALCAATASRLSCRAGPWLRRAALERRLHALGGSQPVTPNLLKGRRLNNANAAVGGWGGGWGRSTPSKVGPAPDDGFGLAVETLRSGIRAVPSTSPGYPSLWRELLASLMAVGAG-----KKAISEAFRGAAEACDPSGGADQGVAQGEFLAGYLRWSVAVGGIEAARGAFQWARRSFLLAGTGAAAVHREAIELEMALGWTGGKRGEERAKRVRELFEDASDKFGKKLPGIWEEYARFEVQEGDVKRVNAVRWRAQQQ 2010
            Q+LGRL ARALQ+HPRN GLWIKAASWEFFDGGN SSAR+LMQRGLRINP A+NLWLQYFRLEFSY++KLMGRRE+LGL+   GG  + G G        R GMDIP LE E G+  + GPSF+AV+KA   E A+       G  GARPAPVMN TAR FYKG+VP+AVFRAAVKAVP DV FRAGFLRCCA DFP +S EAA++IL S+ +DFP++CEAWEVRASYP L AE   A          LG A+ QE + TFELAV A+G  +P MWVRYASFL+ RLE+ +G  G +                    XXXXXXX     ++VLAR+VE HL      +D             A+    GG +  A     A  E L   +    ED+REALSAGLADV LA+G+P+ AL AL AAT   L  R GPWLRRAALERRL ALGG          G                                  +A  TLR+GI+AV   +PGYP LWRELLASL+A GAG     K A++ AFR A EAC   GG+    AQGEFLAGY+RWS AV G +AAR A QWARRSFLL GTGAAA + EAIELE ALG   G+ G  RAKRVRELFED+ DKFG++LP IWEEYA+FE+QEG+VKR NAVRWR+QQQ
Sbjct:    4 QALGRLFARALQLHPRNPGLWIKAASWEFFDGGNTSSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGNDXXXXGGRRGMDIPELEAEAGQ--SGGPSFKAVRKAAGAEGALG------GDDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSSEAAQSILTSMERDFPDSCEAWEVRASYPQLAAEAAAA----GRDAGRLGSAVVQESLDTFELAVEAVGASQPDMWVRYASFLRGRLEACEGAKGRKRGGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAGGAAPNDPXXXXXXXXXXXIAARKERGGASLLATRGVSAPAEGLEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGV-LPRRPGPWLRRAALERRLAALGGDPGQAGRPASGXXXXXXXXXXX---------------XXXXXXADVAAATLRAGIKAVSPAAPGYPDLWRELLASLVASGAGHSKKGKTAVAAAFREAVEAC--GGGSAGNNAQGEFLAGYVRWSAAVEGPDAARRALQWARRSFLLTGTGAAAAYGEAIELERALGEEAGEEGT-RAKRVRELFEDSVDKFGRELPAIWEEYAQFEIQEGNVKRANAVRWRSQQQ 650          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A835YXJ8_9STRA (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ8_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.420e-57
Identity = 128/281 (45.55%), Postives = 171/281 (60.85%), Query Frame = 1
Query:   40 LGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGL---DNGAGGGVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGXXXXXXGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLKRRL 873
            L R+  RALQ+HP NAGLWIKAASWEFFD  NA +AR L+QR LRIN   Q LW+QYFRLE+ Y++K++GR++VLGL   D+  G GV + GG     +DIP +   QGE E++GP F  V  A  EE     G A+     A    VM+   + FYKG VPLA+FRAA KA+P+D+  R   L+ C  +FP++S+    AIL S+ +DFP + EAW +RA +PLLV +G             +  A  +CI  FE AV +       +W++Y+ FL  RL
Sbjct:   98 LSRIFGRALQLHPHNAGLWIKAASWEFFDCANAVAARVLLQRALRINGVNQRLWVQYFRLEWCYLQKVIGRQQVLGLIEDDSEGGEGVGDAGG-----LDIPEV---QGEGESSGPDFSQVAAAEQEE-----GKASQKKRSASRQVVMSDATKQFYKGGVPLAIFRAARKALPDDIALRGHCLQVCCTEFPELSKHVQSAILDSLKEDFPASAEAWALRAQHPLLVLQGY-----EDEDLAAVVDAEGQCIQAFEAAVKSSAGDGADIWLQYSQFLHARL 360          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A0L0H4B8_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H4B8_SPIPD)

HSP 1 Score: 125 bits (313), Expect = 3.420e-26
Identity = 93/284 (32.75%), Postives = 141/284 (49.65%), Query Frame = 1
Query:   34 QSLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGG----GVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGXXXXXXGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLKRRL 873
            ++LG+  A+A+Q+HP  A  W+ AA+WEF    N +SAR L+QRGLRINP +Q LWL+YF+LE  +I+K+  RR+VL  D   GG    G ++   +  EG+ +P L      QE A  S  ++++  T    V++    +    A   P + A  +      +P AV+R A+K +P+D++FR  FL     DF   +    E +  S+ +DF     A  V A   +          G          A+++ +  F  AV  +   E  MW RYA FL   L
Sbjct:  140 KALGKNFAKAIQLHPTKATFWVMAAAWEFEQNANMTSARVLLQRGLRINPESQKLWLEYFKLELLWIEKIKERRKVLFKDGVPGGTADAGQDDSNDESSEGVTVPQL------QEEAHLSATSLERDPT----VSSSTTQSSDTAALLKPTLTAMQQTLLNVLIPRAVYRNAIKTIPKDLDFRIAFLGIYK-DFGAETLAGQEEVYESLREDFGHLPAAQRVLAERHV---------DGVDPTDPAYPAALKKAVQAFNSAVEQLPSSE--MWERYADFLATSL 401          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A507E3J3_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E3J3_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 8.900e-25
Identity = 90/285 (31.58%), Postives = 145/285 (50.88%), Query Frame = 1
Query:   34 QSLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVL-GLDNGAGGGVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARP--APVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGXXXXXXGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLKRRLES 879
            ++L ++ A+A+Q+HP N   WI AA+WEF D GN SSAR L+QRGLRINP ++ LW++YF+LE  +++K+  RR+VL  +D               E +++P L GE     ++ P     Q AT     +++   +  S    P  +  ++AT +   K  +P A++R A++    D+ FR  FL    + FPD +++  + +  S+  DFP + +A    A  PL          G          A+++ + +F  AV  I    PA+   Y SFL  +L S
Sbjct:  136 KALAKVFAKAIQLHPTNDTFWIMAAAWEFQDNGNMSSARVLLQRGLRINPESKKLWVEYFKLELLWVEKIKERRKVLFKIDGSRAPETTTAIQPPSESINVPELAGE-----SSHPQTSISQDAT-----LSSSTQSGSSSDTAPMLSTTLSATQQALLKVLIPRAIYRNAIQTHSHDLPFRLEFLAVYRL-FPD-TKDGQDELFDSLVADFPTHPDARATLAQRPLA---------GVTSLDPAYPAALKQAVDSFTQAVNEIST--PAIHEAYTSFLLAQLAS 397          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A4P9YE62_ROZAC (Uncharacterized protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YE62_ROZAC)

HSP 1 Score: 107 bits (266), Expect = 4.520e-22
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   40 LGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQREG-MDIPLLEGE 351
            LGRL ARA+QVHP   G WI AASWEF   GN  +AR LMQR LRINP A+ LWL+YFRLE+ +I  L  RR+VLGL +           Q++EG ++IP LE E
Sbjct:  127 LGRLFARAIQVHPMKPGFWIMAASWEFEQNGNVGAARKLMQRALRINPQAEKLWLEYFRLEWMFINLLKERRKVLGLKD-----------QEQEGQIEIPQLEEE 220          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: W7TSJ7_9STRA (RNA-processing protein, HAT helix n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.620e-22
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   46 RLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPT-AQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQ---REGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIA 651
            R  A+ALQ+ PR AGLWI+AAS+EFF+  +  +AR LMQRGLR+N + +  LW QYF+LE  Y+ KL GRR  LGL+    G   EG G++   +E + +PL+EGE+G         E +++   EE+                  + + + R    G+VP  V+ AA++A P D++ R  FL+           E AE + G +A
Sbjct:  127 RALAQALQLFPRTAGLWIRAASYEFFERASPPAARVLMQRGLRLNASDSALLWTQYFKLEVLYVMKLKGRRTALGLE----GEEREGKGEEXXXKESVQLPLVEGEEG-------GVEGMKEVEPEED------------------LRDRSVRAVLAGAVPRVVYLAAIEARPRDLDMRLSFLKAL---------EEAETLEGGVA 294          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A7S4IRH2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRH2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.170e-22
Identity = 88/259 (33.98%), Postives = 114/259 (44.02%), Query Frame = 1
Query:   40 LGRLCARALQVHPRNAGLWIKAASWEFFD----------------------------GGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAK 732
            LGR+ A ALQ HP++  LWI+AAS EFF                             GGN  SAR L+QRGLR NP+++ LW Q+F LE  Y++KL GRRE+L L     G + E G +  +G       G  GE                                            G    SVPL V+R A+KAVP+D  FR  F+      FP++ R   E I+ +I +DF ++ EAW  RA Y      GEG K
Sbjct:  164 LGRIFAEALQAHPKDESLWIEAASHEFFGPPGSLESDPNYDPDDXXXXXXXXNAKNLGGNVRSARVLLQRGLRANPSSRALWHQHFCLELHYVQKLRGRREILRLGLKGVGTLSEDGDETGDG-------GXXGE--------------------------------------------GAVSDSVPLVVYRNAIKAVPDDAAFRLHFVDLSR-QFPEMDRVRTE-IVRTIERDFGDSVEAWVARARYAAEGLSGEGNK 369          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A8H7UHG8_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UHG8_MORIS)

HSP 1 Score: 110 bits (274), Expect = 2.380e-21
Identity = 87/283 (30.74%), Postives = 131/283 (46.29%), Query Frame = 1
Query:   34 QSLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGG-----GVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGXXXXXXGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLKR 867
            ++LG++ A A+Q+HPR A LWI AASWEF +  N  +AR LMQRGLR+NP  + LW +YF+LE  YI+K+  RR++LG+D  +         +E G    E + +P +    GE           +     EE+VA                M         G +   V+  A+KA+P D+EFR  F+     DF D +    + +  +I  DF  N +A     +  L     E               A++EC+  F++ V  I   +  MW  Y+ FL +
Sbjct:  125 KTLGKIFADAIQLHPRKAPLWIMAASWEFEENANIVAARVLMQRGLRLNPAEEQLWHEYFKLEQVYIEKIKARRKILGIDQKSQALRELESTDEDG---EEMIKLPTVTA--GEAXXXXXXXXXARAVKQMEESVA--------------EKMREGINPILNGLLSQIVYDNAIKAIPNDLEFRTKFIDIYN-DFSD-TEAGIQHVYNTIHDDFANNEDARAYLVARHLNAKNEENGHTTIKINDPKFVQAIRECVQEFDVCVQDIPTTK--MWELYSDFLTK 384          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: UPI001CF5A0E2 (U3 small nucleolar RNA-associated protein 6 homolog n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5A0E2)

HSP 1 Score: 109 bits (272), Expect = 3.110e-21
Identity = 74/219 (33.79%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   37 SLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRA 693
            +LG+  ARALQ H     LWI AA WEF D  N  + RAL QRGLR+N +++ LWL+YFR+E  +++K+  RR VLGL  G                        + +QEN             +EE VA                       F  G VP  VF+ A++ +P+DV+FR  F+    + F D ++E  + I  S+ +DFP + EAW + A
Sbjct:  124 ALGKTLARALQFHSEKPSLWIMAAKWEFEDNNNVPNCRALFQRGLRVNSSSKQLWLEYFRMELLHLEKIKKRRAVLGLKEG------------------------EKQQEN-------------DEEEVAPE---------------------FLSGKVPEIVFKKAIECIPDDVQFRKSFIDIYRL-FED-TKEGCDLIYNSLLEDFPLSEEAWNLLA 282          
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Match: A0A068S445_9FUNG (U3 small nucleolar rna-associated protein 6homolog n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S445_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 1.490e-20
Identity = 92/287 (32.06%), Postives = 137/287 (47.74%), Query Frame = 1
Query:   40 LGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSARALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEEGGGQQREGMDI---------PLLEGEQGEQ-ENAGPSFEAVQKATTEEEAVAAGVAAAGSGGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVDFPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLV--AEGEGAKGGXXXXXXGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLK 864
            L  +   ALQ+HP  A LWI A+SWEF    N +SAR LMQRGLR+NPT + LW +YFRLE  Y++K+  RR VLG+D+ +     E   +Q + MD+         P + GE+ E  +NA    + V+K   EE A               A  +        +G +   V+  A++A+P D+EFR  F+      F D  +   + ++ +I +D  +  +A    AS  L V   E +G             PA++ C+  F  A+  +   E  M  RY  FL+
Sbjct:  119 LSGIFVNALQIHPTKALLWIMASSWEFEHNANPASARVLMQRGLRLNPTDELLWHEYFRLELLYVEKIKLRRRVLGVDDES----LEKHMKQEDKMDVDWKDDSIKLPTITGEEAEDWKNASDERKTVKK--MEESA---------------AEALKEGNNPILQGILATIVYDNAIQAIPNDLEFRTKFIDIYH-QFTDPEK-GCDHVVETIQRDMADRPDARAYLASRHLFVQKTEEDGTSKYIACSDPAFVPALKACVEEFNQAIQDLPTAE--MHERYIDFLQ 380          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1256.5180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJQ2_9PHAE7.140e-19855.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXJ8_9STRA1.420e-5745.55U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A0L0H4B8_SPIPD3.420e-2632.75Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A507E3J3_9FUNG8.900e-2531.58Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A4P9YE62_ROZAC4.520e-2255.24Uncharacterized protein n=2 Tax=Rozella allomycis ... [more]
W7TSJ7_9STRA6.620e-2236.89RNA-processing protein, HAT helix n=2 Tax=Monodops... [more]
A0A7S4IRH2_9STRA7.170e-2233.98Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8H7UHG8_MORIS2.380e-2130.74Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
UPI001CF5A0E23.110e-2133.79U3 small nucleolar RNA-associated protein 6 homolo... [more]
A0A068S445_9FUNG1.490e-2032.06U3 small nucleolar rna-associated protein 6homolog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1256contigM-pyrifera_M_contig1256:154..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score599.4
Seed ortholog evalue2.1e-168
Seed eggNOG ortholog2880.D8LSS2
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG5191@1,KOG2396@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_002810.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons4
Model size2028
Cds size2028
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1256.5180.1prot_M-pyrifera_M_contig1256.5180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1256 154..2863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.9583402-CDS-M-pyrifera_M_contig1256:153..8851622815771.9583402-CDS-M-pyrifera_M_contig1256:153..885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 154..885 +
1692277562.0350351-CDS-M-pyrifera_M_contig1256:153..8851692277562.0350351-CDS-M-pyrifera_M_contig1256:153..885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 154..885 +
1622815771.9690588-CDS-M-pyrifera_M_contig1256:921..11231622815771.9690588-CDS-M-pyrifera_M_contig1256:921..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 922..1123 +
1692277562.0534122-CDS-M-pyrifera_M_contig1256:921..11231692277562.0534122-CDS-M-pyrifera_M_contig1256:921..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 922..1123 +
1622815771.9810834-CDS-M-pyrifera_M_contig1256:1165..21211622815771.9810834-CDS-M-pyrifera_M_contig1256:1165..2121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 1166..2121 +
1692277562.0692203-CDS-M-pyrifera_M_contig1256:1165..21211692277562.0692203-CDS-M-pyrifera_M_contig1256:1165..2121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 1166..2121 +
1622815771.9940963-CDS-M-pyrifera_M_contig1256:2725..28631622815771.9940963-CDS-M-pyrifera_M_contig1256:2725..2863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 2726..2863 +
1692277562.083119-CDS-M-pyrifera_M_contig1256:2725..28631692277562.083119-CDS-M-pyrifera_M_contig1256:2725..2863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1256 2726..2863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1256.5180.1

>prot_M-pyrifera_M_contig1256.5180.1 ID=prot_M-pyrifera_M_contig1256.5180.1|Name=mRNA_M-pyrifera_M_contig1256.5180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=676bp
IYLYNYAPFPGQSLGRLCARALQVHPRNAGLWIKAASWEFFDGGNASSAR
ALMQRGLRINPTAQNLWLQYFRLEFSYIKKLMGRREVLGLDNGAGGGVEE
GGGQQREGMDIPLLEGEQGEQENAGPSFEAVQKATTEEEAVAAGVAAAGS
GGARPAPVMNATARGFYKGSVPLAVFRAAVKAVPEDVEFRAGFLRCCAVD
FPDVSREAAEAILGSIAQDFPENCEAWEVRASYPLLVAEGEGAKGGGSGG
GLGLGPAMQECIGTFELAVGAIGVREPAMWVRYASFLKRRLESGQGGVGG
EGGGGKKRKGRRGGGGGGGGPPAPVAGALVVLLQQVLARAVETHLCVSSD
SPALATTGARKQAASVTAAGGGAAGAELAHRAAVESLAEDAEDAREALSA
GLADVLLAMGKPDSALEALCAATASRLSCRAGPWLRRAALERRLHALGGS
QPVTPNLLKGRRLNNANAAVGGWGGGWGRSTPSKVGPAPDDGFGLAVETL
RSGIRAVPSTSPGYPSLWRELLASLMAVGAGKKAISEAFRGAAEACDPSG
GADQGVAQGEFLAGYLRWSVAVGGIEAARGAFQWARRSFLLAGTGAAAVH
REAIELEMALGWTGGKRGEERAKRVRELFEDASDKFGKKLPGIWEEYARF
EVQEGDVKRVNAVRWRAQQQQQQQQ*
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mRNA from alignment at M-pyrifera_M_contig1256:154..2863+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1256.5180.1 ID=mRNA_M-pyrifera_M_contig1256.5180.1|Name=mRNA_M-pyrifera_M_contig1256.5180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2710bp|location=Sequence derived from alignment at M-pyrifera_M_contig1256:154..2863+ (Macrocystis pyrifera P11B4 male)
ATCTATCTCTATAATTATGCCCCCTTTCCTGGACAGTCCCTCGGGAGGCT CTGCGCACGTGCCCTCCAGGTGCACCCCCGCAACGCCGGGCTGTGGATCA AGGCTGCTAGCTGGGAGTTTTTCGACGGCGGGAACGCCTCCTCGGCTCGA GCCCTCATGCAGCGGGGGCTGCGCATCAACCCGACCGCGCAGAACCTCTG GCTTCAGTATTTCCGCCTCGAGTTCTCGTACATCAAGAAGCTGATGGGCA GGCGGGAAGTGCTCGGCTTGGATAATGGAGCAGGAGGGGGGGTGGAGGAA GGAGGAGGTCAGCAGCGGGAAGGGATGGACATTCCGCTGCTCGAAGGGGA GCAGGGAGAACAGGAAAACGCGGGACCGAGCTTCGAGGCCGTGCAGAAAG CCACCACAGAGGAGGAGGCGGTGGCGGCCGGGGTTGCTGCGGCGGGCAGC GGCGGCGCAAGGCCAGCGCCCGTCATGAACGCCACGGCGAGGGGTTTCTA CAAGGGGTCCGTCCCGCTGGCGGTGTTCCGCGCCGCGGTCAAGGCTGTGC CGGAGGACGTCGAGTTCCGCGCGGGCTTCCTGCGCTGCTGCGCCGTCGAT TTTCCTGATGTGAGCCGTGAGGCGGCGGAGGCCATCCTAGGCTCGATCGC TCAGGATTTCCCGGAGAATTGCGAGGCGTGGGAAGTGCGGGCGTCGTACC CGCTTCTCGTTGCAGAAGGGGAAGGAGCTAAAGTCGCAACCGACGCCGGG GGAGGGGTGTCGAGTGAGGGCGGCGGCAGCGGCGGAGGGTTGGGGTTGGG ACCGGCGATGCAGGAGTGCATCGGTACGTTTGAGCTCGCAGTCGGGGCGA TAGGGGTCCGGGAACCCGCCATGTGGGTACGGTACGCTTCCTTCTTGAAA AGGCGGCTAGAGTCTGGCCAGGGGGGGGTGGGGGGGGAGGGAGGGGGAGG CAAGAAGCGCAAGGGACGCAGTGGGGGAGATGGCACAGGTACCGGCGGCG GCTGGGTCGCAGGGGGGGGGGGAGGCGGAGGAGGAGGACCCCCGGCGCCC GTCGCTGGTGCCCTCGTGGTCCTACTCCAGCAGGTCCTCGCGCGAGCGGT GGAAACCCACCTCTGCGTCTCGAGCGATTCCCCAGCGCTTGCTACGACTG GAGCCCGCAAGCAAGCGGCATCAGTGACGGCGGCGGGGGGGGGCGCTGCC GGGGCGGAGTTAGCACACAGAGCGGCGGTCGAGAGCCTAGCCGAGGACGC CGAAGATGCGCGAGAGGCCCTCTCCGCGGGCCTGGCGGACGTTCTTCTCG CGATGGGTAAACCCGATTCAGCGCTGGAGGCGCTATGCGCCGCTACGGCG TCTCGCCTTTCTTGCCGCGCGGGGCCCTGGCTCCGCCGCGCGGCTCTAGA GCGGCGACTGCACGCGCTTGGTGGAAGCCAACCAGTGACACCCAATCTTC TGAAGGGGAGAAGGCTCAACAACGCCAATGCCGCCGTCGGAGGCTGGGGT GGTGGATGGGGCAGAAGCACGCCTAGCAAGGTGGGACCTGCCCCCGACGA CGGGTTTGGTCTCGCCGTCGAGACATTGCGCTCCGGGATCAGGGCGGTTC CGTCCACCTCCCCGGGCTACCCTAGCCTCTGGAGGGAGTTGCTAGCGTCC TTGATGGCGGTAGGAGCCGGAAAAAAAGCGATATCGGAGGCGTTCCGCGG AGCGGCGGAGGCGTGTGACCCATCAGGAGGGGCGGACCAGGGGGTCGCCC AGGGGGAGTTTTTGGCAGGGTACCTGAGGTGGAGTGTCGCGGTCGGGGGG ATAGAGGCCGCGCGCGGGGCGTTCCAGTGGGCGAGACGGTCTTTTTTGCT GGCGGGGACGGGGGCTGCCGCGGTGCACCGCGAGGCGATCGAGCTGGAGA TGGCGCTTGGCTGGACGGGGGGCAAGCGTGGGGAGGAAAGGGCGAAGCGC GTTCGGGAACTGTTTGAGGTAGGTGTGGGGGGGCGGGGGGCGGGGCGTGC AGAGGAGGGCGGGGGTGTACTCATTATCATGCATGGCCGTAGTCGTATGA CCATAGACCTTCGCGTAGAGGGGGGCGGGGGGGGGCGGAGGGGGGCGTAC TCATTATCAAGGGGGGCGGGGGGGGGGTAGGTAAGTGGATAAGTGGTTGA GTGAGAGCATGGATGTGGGGTGCGTGGCTGTAGCACGGGGTGGTCTATTG CATGGTAGCGTTTCGTTTTTGTTCGTACGCAGGGCAAAGGGTTAGGTGGC GGGGTTTGGCCGTTGTTTTTGGTGCCTGCCTGACACCGCGGTCCAGGAAC GTGTTTTCGCCGCCTGTTCCGCCCTCCCCGCTCGGCTCTCCTTCCCCTCC CCGTCCCATTGCATCTCATCCCCCGCAAGGTCCCGCCTTATCTCGGCCCT TGAGGGCGAGAACGTGTGCATCGCCAAGTGCATTGTAGCCTGGCGTGGCT TGAGACGCAGACTCACCCGTTGTTGTCGCCTTCAATCCGCTGCTTTTCTG TTTTCGTTGCTCCTTCTCCCCTCGCGTTTCTTTTTTATTCGTCGTTTTTT GTGGTGGTGTGTGTGGCCGCAGGACGCGAGCGATAAATTTGGCAAGAAAC TGCCCGGCATCTGGGAGGAGTACGCTCGCTTCGAGGTGCAGGAGGGCGAC GTCAAGCGGGTGAACGCCGTGCGGTGGAGGGCCCAGCAGCAGCAGCAGCA GCAGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1256:154..2863+

>mRNA_M-pyrifera_M_contig1256.5180.1 ID=mRNA_M-pyrifera_M_contig1256.5180.1|Name=mRNA_M-pyrifera_M_contig1256.5180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4056bp|location=Sequence derived from alignment at M-pyrifera_M_contig1256:154..2863+ (Macrocystis pyrifera P11B4 male)
ATCTATCTCTATAATTATGCCCCCTTTCCTGGACAGTCCCTCGGGAGGCT
CTGCGCACGTGCCCTCCAGGTGCACCCCCGCAACGCCGGGCTGTGGATCA
AGGCTGCTAGCTGGGAGTTTTTCGACGGCGGGAACGCCTCCTCGGCTCGA
GCCCTCATGCAGCGGGGGCTGCGCATCAACCCGACCGCGCAGAACCTCTG
GCTTCAGTATTTCCGCCTCGAGTTCTCGTACATCAAGAAGCTGATGGGCA
GGCGGGAAGTGCTCGGCTTGGATAATGGAGCAGGAGGGGGGGTGGAGGAA
GGAGGAGGTCAGCAGCGGGAAGGGATGGACATTCCGCTGCTCGAAGGGGA
GCAGGGAGAACAGGAAAACGCGGGACCGAGCTTCGAGGCCGTGCAGAAAG
CCACCACAGAGGAGGAGGCGGTGGCGGCCGGGGTTGCTGCGGCGGGCAGC
GGCGGCGCAAGGCCAGCGCCCGTCATGAACGCCACGGCGAGGGGTTTCTA
CAAGGGGTCCGTCCCGCTGGCGGTGTTCCGCGCCGCGGTCAAGGCTGTGC
CGGAGGACGTCGAGTTCCGCGCGGGCTTCCTGCGCTGCTGCGCCGTCGAT
TTTCCTGATGTGAGCCGTGAGGCGGCGGAGGCCATCCTAGGCTCGATCGC
TCAGGATTTCCCGGAGAATTGCGAGGCGTGGGAAGTGCGGGCGTCGTACC
CGCTTCTCGTTGCAGAAGGGGAAGGAGCTAAAATCTATCTCTATAATTAT
GCCCCCTTTCCTGGACAGTCCCTCGGGAGGCTCTGCGCACGTGCCCTCCA
GGTGCACCCCCGCAACGCCGGGCTGTGGATCAAGGCTGCTAGCTGGGAGT
TTTTCGACGGCGGGAACGCCTCCTCGGCTCGAGCCCTCATGCAGCGGGGG
CTGCGCATCAACCCGACCGCGCAGAACCTCTGGCTTCAGTATTTCCGCCT
CGAGTTCTCGTACATCAAGAAGCTGATGGGCAGGCGGGAAGTGCTCGGCT
TGGATAATGGAGCAGGAGGGGGGGTGGAGGAAGGAGGAGGTCAGCAGCGG
GAAGGGATGGACATTCCGCTGCTCGAAGGGGAGCAGGGAGAACAGGAAAA
CGCGGGACCGAGCTTCGAGGCCGTGCAGAAAGCCACCACAGAGGAGGAGG
CGGTGGCGGCCGGGGTTGCTGCGGCGGGCAGCGGCGGCGCAAGGCCAGCG
CCCGTCATGAACGCCACGGCGAGGGGTTTCTACAAGGGGTCCGTCCCGCT
GGCGGTGTTCCGCGCCGCGGTCAAGGCTGTGCCGGAGGACGTCGAGTTCC
GCGCGGGCTTCCTGCGCTGCTGCGCCGTCGATTTTCCTGATGTGAGCCGT
GAGGCGGCGGAGGCCATCCTAGGCTCGATCGCTCAGGATTTCCCGGAGAA
TTGCGAGGCGTGGGAAGTGCGGGCGTCGTACCCGCTTCTCGTTGCAGAAG
GGGAAGGAGCTAAAGGCGGCGGCAGCGGCGGAGGGTTGGGGTTGGGACCG
GCGATGCAGGAGTGCATCGGTACGTTTGAGCTCGCAGTCGGGGCGATAGG
GGTCCGGGAACCCGCCATGTGGGTACGGTACGCTTCCTTCTTGAAAAGGC
GGCTAGAGTCTGGCCAGGGGGGGGTGGGGGGGGAGGGAGGGGGAGGCAAG
AAGCGCAAGGGACGCAGGCGGCGGCAGCGGCGGAGGGTTGGGGTTGGGAC
CGGCGATGCAGGAGTGCATCGGTACGTTTGAGCTCGCAGTCGGGGCGATA
GGGGTCCGGGAACCCGCCATGTGGGTACGGTACGCTTCCTTCTTGAAAAG
GCGGCTAGAGTCTGGCCAGGGGGGGGTGGGGGGGGAGGGAGGGGGAGGCA
AGAAGCGCAAGGGACGCAGGGGGGGGGGAGGCGGAGGAGGAGGACCCCCG
GCGCCCGTCGCTGGTGCCCTCGTGGTCCTACTCCAGCAGGTCCTCGCGCG
AGCGGTGGAAACCCACCTCTGCGTCTCGAGCGATTCCCCAGCGCTTGCTA
CGACTGGAGCCCGCAAGCAAGCGGCATCAGTGACGGCGGCGGGGGGGGGC
GCTGCCGGGGCGGAGTTAGCACACAGAGCGGCGGTCGAGAGCCTAGCCGA
GGACGCCGAAGATGCGCGAGAGGCCCTCTCCGCGGGCCTGGCGGACGTTC
TTCTCGCGATGGGTAAACCCGATTCAGCGCTGGAGGCGCTATGCGCCGCT
ACGGCGTCTCGCCTTTCTTGCCGCGCGGGGCCCTGGCTCCGCCGCGCGGC
TCTAGAGCGGCGACTGCACGCGCTTGGTGGAAGCCAACCAGTGACACCCA
ATCTTCTGAAGGGGAGAAGGCTCAACAACGCCAATGCCGCCGTCGGAGGC
TGGGGTGGTGGATGGGGCAGAAGCACGCCTAGCAAGGTGGGACCTGCCCC
CGACGACGGGTTTGGTCTCGCCGTCGAGACATTGCGCTCCGGGATCAGGG
CGGTTCCGTCCACCTCCCCGGGCTACCCTAGCCTCTGGAGGGAGTTGCTA
GCGTCCTTGATGGCGGTAGGAGCCGGAAAAAAAGCGATATCGGAGGCGTT
CCGCGGAGCGGCGGAGGCGTGTGACCCATCAGGAGGGGCGGACCAGGGGG
TCGCCCAGGGGGAGTTTTTGGCAGGGTACCTGAGGTGGAGTGTCGCGGTC
GGGGGGATAGAGGCCGCGCGCGGGGCGTTCCAGTGGGCGAGACGGTCTTT
TTTGCTGGCGGGGACGGGGGCTGCCGCGGTGCACCGCGAGGCGATCGAGC
TGGAGATGGCGCTTGGCTGGACGGGGGGCAAGCGTGGGGAGGAAAGGGCG
AAGCGCGTTCGGGAACTGTTTGAGGGGGGGGGGGAGGCGGAGGAGGAGGA
CCCCCGGCGCCCGTCGCTGGTGCCCTCGTGGTCCTACTCCAGCAGGTCCT
CGCGCGAGCGGTGGAAACCCACCTCTGCGTCTCGAGCGATTCCCCAGCGC
TTGCTACGACTGGAGCCCGCAAGCAAGCGGCATCAGTGACGGCGGCGGGG
GGGGGCGCTGCCGGGGCGGAGTTAGCACACAGAGCGGCGGTCGAGAGCCT
AGCCGAGGACGCCGAAGATGCGCGAGAGGCCCTCTCCGCGGGCCTGGCGG
ACGTTCTTCTCGCGATGGGTAAACCCGATTCAGCGCTGGAGGCGCTATGC
GCCGCTACGGCGTCTCGCCTTTCTTGCCGCGCGGGGCCCTGGCTCCGCCG
CGCGGCTCTAGAGCGGCGACTGCACGCGCTTGGTGGAAGCCAACCAGTGA
CACCCAATCTTCTGAAGGGGAGAAGGCTCAACAACGCCAATGCCGCCGTC
GGAGGCTGGGGTGGTGGATGGGGCAGAAGCACGCCTAGCAAGGTGGGACC
TGCCCCCGACGACGGGTTTGGTCTCGCCGTCGAGACATTGCGCTCCGGGA
TCAGGGCGGTTCCGTCCACCTCCCCGGGCTACCCTAGCCTCTGGAGGGAG
TTGCTAGCGTCCTTGATGGCGGTAGGAGCCGGAAAAAAAGCGATATCGGA
GGCGTTCCGCGGAGCGGCGGAGGCGTGTGACCCATCAGGAGGGGCGGACC
AGGGGGTCGCCCAGGGGGAGTTTTTGGCAGGGTACCTGAGGTGGAGTGTC
GCGGTCGGGGGGATAGAGGCCGCGCGCGGGGCGTTCCAGTGGGCGAGACG
GTCTTTTTTGCTGGCGGGGACGGGGGCTGCCGCGGTGCACCGCGAGGCGA
TCGAGCTGGAGATGGCGCTTGGCTGGACGGGGGGCAAGCGTGGGGAGGAA
AGGGCGAAGCGCGTTCGGGAACTGTTTGAGGACGCGAGCGATAAATTTGG
CAAGAAACTGCCCGGCATCTGGGAGGAGTACGCTCGCTTCGAGGTGCAGG
AGGGCGACGTCAAGCGGGTGAACGCCGTGCGGTGGAGGGCCCAGCAGCAG
CAGCAGCAGCAGCAGTAGGACGCGAGCGATAAATTTGGCAAGAAACTGCC
CGGCATCTGGGAGGAGTACGCTCGCTTCGAGGTGCAGGAGGGCGACGTCA
AGCGGGTGAACGCCGTGCGGTGGAGGGCCCAGCAGCAGCAGCAGCAGCAG
CAGTAG
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