mRNA_M-pyrifera_M_contig124893.5060.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124893.5060.1
Unique NamemRNA_M-pyrifera_M_contig124893.5060.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Match: A0A813QGZ8_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813QGZ8_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 1.420e-6
Identity = 29/118 (24.58%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:   52 MSSARFGKSNDLLAISGHDRRIRLLDRATASELASLTDEA-GSLLCLTTSPDGQLLAAAGETNHVRIWNLESGEIEVDVERFSRRINAVEFSPQSDLIAFGGDERVLMTYDLKTNEQR 402
            +SS  F  +   L  +G D R+R+          ++++   GS+  +   PDG+L+ A   +  VR++N++ G +E ++   + RIN + FSP   ++     +R    Y++   E++
Sbjct: 1917 ISSLYFSPNGSTLTSAGEDGRVRVWSSNIGQCQMTISEPTWGSVSSVVIHPDGELIVAGYHSGFVRLFNMQGGTVEYEINNHTARINRLAFSPSGKILITASGDRTCRLYNVAEIEKK 2034
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BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Match: A0A3L7RS81_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RS81_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.540e-6
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:  112 RIRLLDRATASELASLTDEAGSLLCLTTSPDGQLLAAAGETNH-VRIWNLESGEIEVDVERFSRRINAVEFSPQSDLIAFGGDERVLMTYDLKTNEQ-RRLLGH 417
            R+ LLD A+     +   E G +   + SPD + +   G   H VR+W+++SG +EV+VE  ++ I   +FSP       G  + V+  YD  T +    L+GH
Sbjct:  771 RVCLLDLASGRIERAFMGEQGDVQAFSLSPDRKRIIVGGWYEHMVRVWDMKSGSLEVEVEGATQWIQGCDFSPDGRRXXAGCKDSVIRVYDASTGDPVEELVGH 874
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BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Match: A0A7C9PSA7_9CYAN (DnaJ domain-containing protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PSA7_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 2.020e-5
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:   40 DGRTMSSARFGKSNDLLAISGHDRRIRLLDRATASELASLTDEAGSLLCLTTSPDGQLLAAAGETNHVRIWNLESGEIEVDVERFSRRINAVEFSPQSDLIAFGG-DERV 366
            DG T ++    K   LL I   D   +LL R+     A +T+ A S+L LT SPDG +LA++     +++WN+++G+    +   SR + A+ FSP   +IA G  D+R+
Sbjct:  401 DGETFATGGLEK---LLRIRQSDNG-KLL-RSLPKNAALVTNNAASVLSLTISPDGNILASSSFQG-IKLWNIKTGQEINSLRGHSREVTAIAFSPDGKIIASGSADKRI 504
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BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Match: A0A7C4QLF4_9PLAN (Non-specific serine/threonine protein kinase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QLF4_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 2.240e-5
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:  118 RLLDRATASELASLTDEAGSLLCLTTSPDGQLLAAAGETNHVRIWNLESGEIEVDVERFSRRINAVEFSPQSDLIAFGGDER--VLMTYDLKTNEQ-RRLLGH 417
            RL+   + S      +    L  L  SPDG   A  G     RIWN E+GE+   ++     +++V FSP S L+A GGD+    +  +D+ T  + R + GH
Sbjct:  858 RLMHLCSQSSRTFKAEPPAPLDALAISPDGNWFATGGWDGAARIWNRETGEVRHVLQHGGLYVHSVAFSPDSRLLATGGDDPQGYVQVWDVATGRRLRTITGH 960
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BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Match: A0A4Q5ZNV5_9DELT (WD40 repeat domain-containing protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZNV5_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 6.760e-5
Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:   10 DWSLNAEVDSDGRTMSSARFGKSND--LLAISGHDRRIRLLDRATASELASLTDEAGSLLCLTTSPDGQLLAAAGETNHVRIWNLESGEIEVDVERFSRRINAVEFSPQSDLIAFGGDERVLMTYDLKTNE 396
            DW  N+ V S   T ++     S D  LLA      R+R+L+  +   L  L+   GS+  +  SPDG+LLAAAG+ + + +W+L  G     ++  + ++ A+ F      +  GG +  + T+D+ T +
Sbjct:  311 DW--NSVVSSAEGTEATVSLAVSPDRRLLAAGTLKGRVRVLEAGSGRPLLELSGVKGSVRAVAFSPDGKLLAAAGDPD-LHLWSLPEGTPAGRLQGHTGKLWALAFDGTGRRLVSGGADMTVRTWDVDTRQ 438
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124893.5060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A813QGZ8_9BILA1.420e-624.58Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A3L7RS81_9BACT2.540e-631.73Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7C9PSA7_9CYAN2.020e-534.55DnaJ domain-containing protein n=1 Tax=Oscillatori... [more]
A0A7C4QLF4_9PLAN2.240e-532.04Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4Q5ZNV5_9DELT6.760e-529.01WD40 repeat domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124893contigM-pyrifera_M_contig124893:83..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog391625.PPSIR1_00410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AAA ATPase domain
EggNOG OGs1MWJA@1224,2WX18@28221,2YZ2U@29,431IQ@68525,COG0515@1,COG0515@2,COG2319@1,COG2319@2
COG Functional cat.KLT
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.846708-CDS-M-pyrifera_M_contig124893:82..4991622815765.846708-CDS-M-pyrifera_M_contig124893:82..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124893 83..499 +
1692277559.1741002-CDS-M-pyrifera_M_contig124893:82..4991692277559.1741002-CDS-M-pyrifera_M_contig124893:82..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124893 83..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124893.5060.1prot_M-pyrifera_M_contig124893.5060.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124893 83..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124893.5060.1

>prot_M-pyrifera_M_contig124893.5060.1 ID=prot_M-pyrifera_M_contig124893.5060.1|Name=mRNA_M-pyrifera_M_contig124893.5060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
NTSDWSLNAEVDSDGRTMSSARFGKSNDLLAISGHDRRIRLLDRATASEL
ASLTDEAGSLLCLTTSPDGQLLAAAGETNHVRIWNLESGEIEVDVERFSR
RINAVEFSPQSDLIAFGGDERVLMTYDLKTNEQRRLLGH
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mRNA from alignment at M-pyrifera_M_contig124893:83..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124893.5060.1 ID=mRNA_M-pyrifera_M_contig124893.5060.1|Name=mRNA_M-pyrifera_M_contig124893.5060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig124893:83..499+ (Macrocystis pyrifera P11B4 male)
AACACGAGCGACTGGAGTCTCAACGCCGAGGTTGACAGTGATGGCCGGAC
GATGTCCTCGGCTCGCTTTGGCAAGAGTAACGATCTGCTGGCCATCTCGG
GTCACGACCGACGCATTAGATTGTTGGATAGAGCCACGGCAAGCGAACTC
GCTTCGCTAACCGACGAAGCGGGGTCGTTGCTATGTTTGACCACGAGTCC
CGACGGTCAGCTTCTAGCCGCGGCTGGTGAAACCAACCATGTGAGAATCT
GGAATCTGGAAAGCGGTGAAATTGAAGTCGATGTCGAACGATTCTCTCGC
AGGATTAATGCCGTGGAGTTCTCTCCACAAAGCGACTTAATCGCGTTCGG
CGGCGACGAACGCGTGCTGATGACTTACGACCTGAAGACGAATGAGCAAC
GCCGTCTCTTAGGGCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124893:83..499+

>mRNA_M-pyrifera_M_contig124893.5060.1 ID=mRNA_M-pyrifera_M_contig124893.5060.1|Name=mRNA_M-pyrifera_M_contig124893.5060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig124893:83..499+ (Macrocystis pyrifera P11B4 male)
AACACGAGCGACTGGAGTCTCAACGCCGAGGTTGACAGTGATGGCCGGAC
GATGTCCTCGGCTCGCTTTGGCAAGAGTAACGATCTGCTGGCCATCTCGG
GTCACGACCGACGCATTAGATTGTTGGATAGAGCCACGGCAAGCGAACTC
GCTTCGCTAACCGACGAAGCGGGGTCGTTGCTATGTTTGACCACGAGTCC
CGACGGTCAGCTTCTAGCCGCGGCTGGTGAAACCAACCATGTGAGAATCT
GGAATCTGGAAAGCGGTGAAATTGAAGTCGATGTCGAACGATTCTCTCGC
AGGATTAATGCCGTGGAGTTCTCTCCACAAAGCGACTTAATCGCGTTCGG
CGGCGACGAACGCGTGCTGATGACTTACGACCTGAAGACGAATGAGCAAC
GCCGTCTCTTAGGGCATAACACGAGCGACTGGAGTCTCAACGCCGAGGTT
GACAGTGATGGCCGGACGATGTCCTCGGCTCGCTTTGGCAAGAGTAACGA
TCTGCTGGCCATCTCGGGTCACGACCGACGCATTAGATTGTTGGATAGAG
CCACGGCAAGCGAACTCGCTTCGCTAACCGACGAAGCGGGGTCGTTGCTA
TGTTTGACCACGAGTCCCGACGGTCAGCTTCTAGCCGCGGCTGGTGAAAC
CAACCATGTGAGAATCTGGAATCTGGAAAGCGGTGAAATTGAAGTCGATG
TCGAACGATTCTCTCGCAGGATTAATGCCGTGGAGTTCTCTCCACAAAGC
GACTTAATCGCGTTCGGCGGCGACGAACGCGTGCTGATGACTTACGACCT
GAAGACGAATGAGCAACGCCGTCTCTTAGGGCAT
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