mRNA_M-pyrifera_M_contig124599.4999.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124599.4999.1
Unique NamemRNA_M-pyrifera_M_contig124599.4999.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A6L7S1L3_9RHOB (Amino acid-binding protein n=4 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7S1L3_9RHOB)

HSP 1 Score: 137 bits (346), Expect = 1.300e-37
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F+  D+V+LEEP HD  KW +IQPTDDPDW AKS A V W  A  H+H+AK +E  +P+ AS+LAN+  TA+EV+AM+ A+  DGK P  YA+EW+A N D+V GWL
Sbjct:  207 VFALHDVVVLEEPPHDASKWMVIQPTDDPDWFAKSDAAVAWDSAYLHLHYAKELETSHPEVASMLANMALTADEVSAMTFALVIDGKEPLAYAEEWVAANEDKVLGWL 314          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A849F789_9RHOB (Amino acid-binding protein n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A849F789_9RHOB)

HSP 1 Score: 128 bits (321), Expect = 4.540e-34
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F   DL +LEEPAHDP  W I+QPTDDPDWLAKS A   W+ A  H+H+AKS+E+++P+ A++ AN     + ++AM  A+  DG+   D+A EW+A N D++ GWL
Sbjct:  188 IFVTQDLHVLEEPAHDPATWTIVQPTDDPDWLAKSEASTAWNGATLHLHYAKSLEEDFPEVAALFANFQMDGDALSAMGKALAVDGQEAADFAAEWVAANEDKIIGWL 295          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A0B3RY87_9RHOB (Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein n=2 Tax=Mameliella alba TaxID=561184 RepID=A0A0B3RY87_9RHOB)

HSP 1 Score: 127 bits (318), Expect = 1.680e-33
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F+  DL+MLEEPA+D   W ++QPTDDPDWLAKSS    W  A+ H+ F K++E E P+ A++L NI FTA+EV+AM+ AV  D + P+ YAK+W+A + D + GW 
Sbjct:  201 IFAVHDLIMLEEPAYDAANWTVVQPTDDPDWLAKSSVSSAWPTAQVHVGFRKALETENPEVAAMLRNITFTADEVSAMTQAVVIDKQDPETYAKDWVAAHQDAIVGWF 308          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A839U668_9HYPH (Glycine betaine/proline transport system substrate-binding protein n=3 Tax=Phyllobacterium TaxID=28100 RepID=A0A839U668_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 4.350e-33
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F   D+V L+EPAHD  KW +I P DDPDWLAKS+APV W  A+FHI ++K++  + P+    L NI FT +E+  MS AVE D + P DYAK W+ ++ DRV  WL
Sbjct:  211 VFKLHDIVKLDEPAHDASKWHVILPADDPDWLAKSNAPVAWDAARFHIAYSKALATKSPEVTKFLENIDFTPDEITEMSYAVEVDRQPPADYAKAWVGKHADRVQKWL 318          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A2E8YGC0_9GAMM (Amino acid-binding protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E8YGC0_9GAMM)

HSP 1 Score: 125 bits (315), Expect = 5.090e-33
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            MF   DLV+LEEPAHDP KW +IQPTDDPDWLAKSSAPV WS    HIH+AK++ D+ PQAA IL N+  + ++V+ M   +  +  + +D A+++I +N D V+ WL
Sbjct:  207 MFGLHDLVVLEEPAHDPAKWNVIQPTDDPDWLAKSSAPVAWSDTYLHIHYAKALADKQPQAAQILENLKVSTDQVSDMVFEMTVNKVSGEDVARKFIEENGDLVDSWL 314          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A1H0PJG2_9HYPH (Glycine betaine/proline transport system substrate-binding protein n=5 Tax=Phyllobacterium TaxID=28100 RepID=A0A1H0PJG2_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 6.120e-33
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F   D+V L+EPA DP KW ++ P DDPDWLAKS+APV W KA FHI +AK++    P+    L +I FT  E+  MS AVE D +TP+DYA+ W+ +N DR+  W+
Sbjct:  211 VFKLHDIVKLDEPAFDPAKWHVVLPADDPDWLAKSNAPVAWDKAHFHIAYAKALATRKPEVTKFLESIDFTPEEITDMSYAVEVDRQTPEDYAEAWVEKNPDRIAKWV 318          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A0P1F4W0_9RHOB (Glycine betaine-binding periplasmic protein n=15 Tax=Ruegeria TaxID=97050 RepID=A0A0P1F4W0_9RHOB)

HSP 1 Score: 125 bits (314), Expect = 7.470e-33
Identity = 53/108 (49.07%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F+  D+ +LEEPA+D  KW ++QPTDDPDWL KS A V W  A  H+HFAKS+E+EYP+ A++L+N+    + V+AM+ A+  +G+ P  YA+EW+  N D V GW+
Sbjct:  207 VFALHDMQILEEPAYDAAKWNVLQPTDDPDWLEKSEAGVAWDLAYLHLHFAKSLEEEYPEVATMLSNMKLDTDTVSAMTFALVIEGQEPLAYAEEWVGANEDAVLGWM 314          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A521DR81_9RHOB (Glycine betaine/proline transport system substrate-binding protein n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A521DR81_9RHOB)

HSP 1 Score: 125 bits (314), Expect = 7.470e-33
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F   DL +LEEPA+D  KW ++QPTDDPDWL KS A V W  A  H+H+AKS+EDEYP+ A +L+N+      V+AM+ A+  DGK P  YA+EW+  N D V  W+
Sbjct:  207 VFELHDLQILEEPAYDAAKWNVLQPTDDPDWLEKSEAGVAWDLAYLHLHYAKSLEDEYPEVARLLSNMKLDTAAVSAMTYALVIDGKEPLAYAEEWVGANEDAVLNWM 314          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: A0A1M4YM64_9RHOB (Glycine betaine/proline transport system substrate-binding protein n=1 Tax=Ruegeria intermedia TaxID=996115 RepID=A0A1M4YM64_9RHOB)

HSP 1 Score: 124 bits (310), Expect = 2.930e-32
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F   DL +L+EP +D  KWK++QPTDDP+WL KS A V W KA  H+H+AKS+E+++P+ A +LAN+    ++V+ M+ A+  D K PQ YA+EW+A + D V GW+
Sbjct:  207 VFQLHDLQVLDEPPYDAAKWKVLQPTDDPEWLEKSEAGVAWDKAYLHLHYAKSLENDFPEVARLLANMKLDTDQVSEMTYALVIDEKDPQAYAEEWVAAHEDAVLGWM 314          
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Match: UPI000CE1ACD8 (amino acid-binding protein n=1 Tax=Roseovarius nitratireducens TaxID=2044597 RepID=UPI000CE1ACD8)

HSP 1 Score: 123 bits (309), Expect = 4.120e-32
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHFAKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQNNDRVNGWL 324
            +F+  D+ +L+EP HDP KW ++QPTDDPDWLAKS     W KA  H+++A+++E  +P  A++L+N+ F    V  M+ A+  DGK P  YA+EW+A N D V GW+
Sbjct:  207 VFALHDMQVLQEPPHDPDKWNVLQPTDDPDWLAKSDVTTAWDKAYLHVYYARALESSHPNVAALLSNVKFDTQTVTDMTYALVIDGKEPLAYAEEWVAANEDAVLGWM 314          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124599.4999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7S1L3_9RHOB1.300e-3755.56Amino acid-binding protein n=4 Tax=unclassified Bo... [more]
A0A849F789_9RHOB4.540e-3449.07Amino acid-binding protein n=2 Tax=Rhodobacteracea... [more]
A0A0B3RY87_9RHOB1.680e-3350.93Glycine betaine/proline ABC transporter, periplasm... [more]
A0A839U668_9HYPH4.350e-3350.93Glycine betaine/proline transport system substrate... [more]
A0A2E8YGC0_9GAMM5.090e-3352.78Amino acid-binding protein n=1 Tax=Thiotrichales b... [more]
A0A1H0PJG2_9HYPH6.120e-3350.00Glycine betaine/proline transport system substrate... [more]
A0A0P1F4W0_9RHOB7.470e-3349.07Glycine betaine-binding periplasmic protein n=15 T... [more]
A0A521DR81_9RHOB7.470e-3350.93Glycine betaine/proline transport system substrate... [more]
A0A1M4YM64_9RHOB2.930e-3248.15Glycine betaine/proline transport system substrate... [more]
UPI000CE1ACD84.120e-3246.30amino acid-binding protein n=1 Tax=Roseovarius nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124599contigM-pyrifera_M_contig124599:6..332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score132.5
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog644107.SL1157_1792
KEGG koko:K02002
KEGG TC3.A.1.12
KEGG Pathwayko02010,map02010
KEGG ModuleM00208
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycine betaine proline ABC transporter, periplasmic substrate-binding protein
EggNOG OGs1MWZU@1224,2TTPN@28211,4N9WH@97050,COG2113@1,COG2113@2
COG Functional cat.E
Best tax levelRuegeria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.3001444-CDS-M-pyrifera_M_contig124599:5..3321622815763.3001444-CDS-M-pyrifera_M_contig124599:5..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124599 6..332 +
1692277558.1536553-CDS-M-pyrifera_M_contig124599:5..3321692277558.1536553-CDS-M-pyrifera_M_contig124599:5..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124599 6..332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124599.4999.1prot_M-pyrifera_M_contig124599.4999.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124599 6..332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124599.4999.1

>prot_M-pyrifera_M_contig124599.4999.1 ID=prot_M-pyrifera_M_contig124599.4999.1|Name=mRNA_M-pyrifera_M_contig124599.4999.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MFSQDDLVMLEEPAHDPGKWKIIQPTDDPDWLAKSSAPVGWSKAKFHIHF
AKSIEDEYPQAASILANIGFTANEVAAMSAAVENDGKTPQDYAKEWIAQN
NDRVNGWL*
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mRNA from alignment at M-pyrifera_M_contig124599:6..332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124599.4999.1 ID=mRNA_M-pyrifera_M_contig124599.4999.1|Name=mRNA_M-pyrifera_M_contig124599.4999.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig124599:6..332+ (Macrocystis pyrifera P11B4 male)
ATGTTCTCGCAGGACGATCTGGTAATGTTGGAAGAGCCGGCCCACGATCC CGGGAAATGGAAAATCATTCAGCCCACCGATGATCCCGATTGGCTTGCCA AATCGAGTGCTCCCGTGGGCTGGAGCAAGGCCAAATTCCACATTCACTTC GCAAAATCCATCGAAGATGAATATCCGCAGGCCGCCAGCATTCTCGCCAA TATTGGTTTTACAGCCAATGAAGTGGCTGCCATGAGCGCGGCGGTTGAAA ACGACGGCAAGACTCCCCAGGACTATGCAAAAGAATGGATTGCGCAGAAC AATGATCGTGTGAACGGCTGGCTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124599:6..332+

>mRNA_M-pyrifera_M_contig124599.4999.1 ID=mRNA_M-pyrifera_M_contig124599.4999.1|Name=mRNA_M-pyrifera_M_contig124599.4999.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig124599:6..332+ (Macrocystis pyrifera P11B4 male)
ATGTTCTCGCAGGACGATCTGGTAATGTTGGAAGAGCCGGCCCACGATCC
CGGGAAATGGAAAATCATTCAGCCCACCGATGATCCCGATTGGCTTGCCA
AATCGAGTGCTCCCGTGGGCTGGAGCAAGGCCAAATTCCACATTCACTTC
GCAAAATCCATCGAAGATGAATATCCGCAGGCCGCCAGCATTCTCGCCAA
TATTGGTTTTACAGCCAATGAAGTGGCTGCCATGAGCGCGGCGGTTGAAA
ACGACGGCAAGACTCCCCAGGACTATGCAAAAGAATGGATTGCGCAGAAC
AATGATCGTGTGAACGGCTGGCTTTAGATGTTCTCGCAGGACGATCTGGT
AATGTTGGAAGAGCCGGCCCACGATCCCGGGAAATGGAAAATCATTCAGC
CCACCGATGATCCCGATTGGCTTGCCAAATCGAGTGCTCCCGTGGGCTGG
AGCAAGGCCAAATTCCACATTCACTTCGCAAAATCCATCGAAGATGAATA
TCCGCAGGCCGCCAGCATTCTCGCCAATATTGGTTTTACAGCCAATGAAG
TGGCTGCCATGAGCGCGGCGGTTGAAAACGACGGCAAGACTCCCCAGGAC
TATGCAAAAGAATGGATTGCGCAGAACAATGATCGTGTGAACGGCTGGCT
TTAG
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