mRNA_M-pyrifera_M_contig124449.4972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124449.4972.1
Unique NamemRNA_M-pyrifera_M_contig124449.4972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A7X7D789_9ACTN (RNA-binding S4 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D789_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 2.730e-20
Identity = 54/87 (62.07%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLR 261
            N + AKPAT+V V D V  R+G RT +Y V   IEKRV A  AAEC+ DRSPP P  D    A  A RDRGAGRPTKRDRREIDR R
Sbjct:   34 NGSDAKPATKVKVGDEVVVRQGGRTRIYDVVRIIEKRVGAPIAAECYVDRSPPPP--DPEFVAPTAVRDRGAGRPTKRDRREIDRYR 118          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A2D6UA73_9ACTN (RNA-binding protein S4 n=7 Tax=Actinobacteria TaxID=201174 RepID=A0A2D6UA73_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 4.420e-20
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVR-DRPGEAVYARRDRGAGRPTKRDRREIDRLRGRR 270
            N  VAKPA++V V DVV A R DRT++YV    +EKRVSA  AA   EDRSP    + D     V+A+RDRG+GRPTK+DRR ID+LRG R
Sbjct:   33 NGEVAKPASKVKVGDVVQAARRDRTIIYVAHELLEKRVSAPLAAAAVEDRSPXXXKKQDHLDLPVFAQRDRGSGRPTKKDRRAIDKLRGER 123          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001FB9046F (S4 domain-containing protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=UPI001FB9046F)

HSP 1 Score: 86.3 bits (212), Expect = 6.100e-20
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
            N A  KPA++V V D V A    R  + VV+  + KRV A  A EC+ED SP  P RD   EA +A+RDRGAGRPTKRDRR+IDRLRGR
Sbjct:   22 NGADVKPASKVVVGDRVEALLNRRQRIVVVRRVLSKRVGAAIAVECYEDESPAPPERDEL-EAAFAQRDRGAGRPTKRDRRQIDRLRGR 109          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A6C7EC69_ILUCY (RNA-binding protein n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7EC69_ILUCY)

HSP 1 Score: 84.0 bits (206), Expect = 7.180e-19
Identity = 54/90 (60.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAV-YARRDRGAGRPTKRDRREIDRLRGR 267
            N   AKPAT V V D V AR G R  V  V A I KRV A  AA+CF D SPP P  DR  +AV +  RDRGAGRPTKRDRR+ D+LRGR
Sbjct:   37 NGKSAKPATPVKVGDRVEARLGQRERVAEVTAVIAKRVGAAIAADCFVDHSPPPP--DRVSDAVLFGVRDRGAGRPTKRDRRQTDKLRGR 124          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A2E0RU25_9ACTN (RNA-binding protein S4 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RU25_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 1.370e-18
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
            N A  KPA++V V D V A    R  + V+     KRV A  A EC++D SP  P RD   EA +A+RDRGAGRPTKRDRR+IDRLRGR
Sbjct:   34 NGAPVKPASKVVVGDRVEALLNGRRRIVVITEVRSKRVGAAVAVECYDDESPAPPERDE-FEAAFAQRDRGAGRPTKRDRRQIDRLRGR 121          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001012AE8F (S4 domain-containing protein n=1 Tax=Cellulomonas endophytica TaxID=2494735 RepID=UPI001012AE8F)

HSP 1 Score: 83.2 bits (204), Expect = 1.370e-18
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   13 AKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
            AKPAT V   D V AR GDR  V VV+  + KRV A  A  C+ DRSP  P ++    AV A+RDRGAGRPTKR+RREIDRLRGR
Sbjct:   41 AKPATMVVPGDEVRARVGDRERVLVVQRLVVKRVGAAVAVGCYLDRSPAPPPKEHT--AVAAQRDRGAGRPTKRERREIDRLRGR 123          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: F6FV66_ISOV2 (RNA-binding S4 domain protein n=1 Tax=Isoptericola variabilis (strain 225) TaxID=743718 RepID=F6FV66_ISOV2)

HSP 1 Score: 82.4 bits (202), Expect = 2.540e-18
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRG 264
            N  VAKP+T V V D VT R   R  + VVK  + KRV A  A E +ED+SPP P R+    AV   R+RGAGRPTKR+RREIDRLRG
Sbjct:   31 NGVVAKPSTPVKVGDRVTWRDPLRDRIVVVKELLPKRVGAPLAVEAYEDQSPPVPTREE--RAVVGLRERGAGRPTKRERREIDRLRG 116          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001F382784 (S4 domain-containing protein n=1 Tax=Cellulomonas fulva TaxID=2835530 RepID=UPI001F382784)

HSP 1 Score: 82.0 bits (201), Expect = 2.550e-18
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   13 AKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
            AKPAT V   D V  R G+R  V +V+ TI KRV A  A  C+ DRSP  P R++   AV A RDRGAGRPTKR+RREIDRLRGR
Sbjct:   24 AKPATIVVPGDEVHVRGGERERVVIVQRTIVKRVGAAVAVTCYLDRSPAVPPREQV--AVAAVRDRGAGRPTKRERREIDRLRGR 106          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI0012EA4651 (RNA-binding S4 domain-containing protein n=1 Tax=Actinokineospora pegani TaxID=2654637 RepID=UPI0012EA4651)

HSP 1 Score: 82.4 bits (202), Expect = 2.970e-18
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLR 261
            ND  AKPAT +   D V AR GDRT +  V   IEKRV A +AA C  D SPP P +D P +A  ARR+RGAGRPTKR+RR +D+ R
Sbjct:   37 NDRPAKPATPISPGDTVRARIGDRTRLVEVVRVIEKRVGAPEAALCLIDNSPPPPSKD-PLQAPIARRERGAGRPTKRERRVLDQFR 122          
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A6I4MND9_9ACTN (RNA-binding S4 domain-containing protein n=6 Tax=Actinomadura TaxID=1988 RepID=A0A6I4MND9_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 7.120e-18
Identity = 50/89 (56.18%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVY--ARRDRGAGRPTKRDRREIDRLR 261
            ND  AKPAT V + D V  R   R  + VV+  + KRV A  AAEC  D+SPP P    P EA+    RRDRGAGRPTKRDRRE+DRLR
Sbjct:   37 NDERAKPATAVKIGDEVRLRHDGRERIVVVQKIVRKRVGAPAAAECLIDKSPPPP----PREALIPIGRRDRGAGRPTKRDRRELDRLR 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X7D789_9ACTN2.730e-2062.07RNA-binding S4 domain-containing protein n=1 Tax=A... [more]
A0A2D6UA73_9ACTN4.420e-2057.14RNA-binding protein S4 n=7 Tax=Actinobacteria TaxI... [more]
UPI001FB9046F6.100e-2057.30S4 domain-containing protein n=1 Tax=Ilumatobacter... [more]
A0A6C7EC69_ILUCY7.180e-1960.00RNA-binding protein n=2 Tax=Ilumatobacter coccineu... [more]
A0A2E0RU25_9ACTN1.370e-1855.06RNA-binding protein S4 n=1 Tax=Acidimicrobiaceae b... [more]
UPI001012AE8F1.370e-1860.00S4 domain-containing protein n=1 Tax=Cellulomonas ... [more]
F6FV66_ISOV22.540e-1856.82RNA-binding S4 domain protein n=1 Tax=Isoptericola... [more]
UPI001F3827842.550e-1860.00S4 domain-containing protein n=1 Tax=Cellulomonas ... [more]
UPI0012EA46512.970e-1856.32RNA-binding S4 domain-containing protein n=1 Tax=A... [more]
A0A6I4MND9_9ACTN7.120e-1856.18RNA-binding S4 domain-containing protein n=6 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124449contigM-pyrifera_M_contig124449:240..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.3
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog1313172.YM304_36660
Preferred namehslR
KEGG koko:K04762,ko:K06179,ko:K06180
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0033554,GO:0034605,GO:0034641,GO:0043021,GO:0043023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4 paralog
EggNOG OGs2IQ6F@201174,COG1188@1,COG1188@2
EC5.4.99.23,5.4.99.24
COG Functional cat.J
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03110
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.8499-CDS-M-pyrifera_M_contig124449:239..5181622815761.8499-CDS-M-pyrifera_M_contig124449:239..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124449 240..518 -
1692277557.2847254-CDS-M-pyrifera_M_contig124449:239..5181692277557.2847254-CDS-M-pyrifera_M_contig124449:239..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124449 240..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124449.4972.1prot_M-pyrifera_M_contig124449.4972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124449 240..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124449.4972.1

>prot_M-pyrifera_M_contig124449.4972.1 ID=prot_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDR
SPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGRREE*
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mRNA from alignment at M-pyrifera_M_contig124449:240..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124449.4972.1 ID=mRNA_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig124449:240..518- (Macrocystis pyrifera P11B4 male)
AACGACGCCGTGGCCAAGCCCGCCACCCGGGTGGATGTGGACGACGTGGT CACCGCGAGGCGAGGCGATCGCACGCTCGTGTACGTCGTGAAGGCGACGA TCGAGAAGCGGGTGTCGGCGGTCAAGGCCGCAGAGTGCTTCGAGGATCGC TCGCCGCCCGCCCCGGTGCGTGATCGCCCCGGGGAAGCGGTCTACGCCCG CCGCGATCGCGGCGCAGGGCGCCCGACCAAGCGGGACCGTCGTGAGATCG ACCGACTGCGTGGCCGCCGCGAGGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124449:240..518-

>mRNA_M-pyrifera_M_contig124449.4972.1 ID=mRNA_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig124449:240..518- (Macrocystis pyrifera P11B4 male)
AACGACGCCGTGGCCAAGCCCGCCACCCGGGTGGATGTGGACGACGTGGT
CACCGCGAGGCGAGGCGATCGCACGCTCGTGTACGTCGTGAAGGCGACGA
TCGAGAAGCGGGTGTCGGCGGTCAAGGCCGCAGAGTGCTTCGAGGATCGC
TCGCCGCCCGCCCCGGTGCGTGATCGCCCCGGGGAAGCGGTCTACGCCCG
CCGCGATCGCGGCGCAGGGCGCCCGACCAAGCGGGACCGTCGTGAGATCG
ACCGACTGCGTGGCCGCCGCGAGGAGTAGAACGACGCCGTGGCCAAGCCC
GCCACCCGGGTGGATGTGGACGACGTGGTCACCGCGAGGCGAGGCGATCG
CACGCTCGTGTACGTCGTGAAGGCGACGATCGAGAAGCGGGTGTCGGCGG
TCAAGGCCGCAGAGTGCTTCGAGGATCGCTCGCCGCCCGCCCCGGTGCGT
GATCGCCCCGGGGAAGCGGTCTACGCCCGCCGCGATCGCGGCGCAGGGCG
CCCGACCAAGCGGGACCGTCGTGAGATCGACCGACTGCGTGGCCGCCGCG
AGGAGTAG
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