mRNA_M-pyrifera_M_contig124449.4972.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A7X7D789_9ACTN (RNA-binding S4 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D789_9ACTN) HSP 1 Score: 87.4 bits (215), Expect = 2.730e-20 Identity = 54/87 (62.07%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLR 261
N + AKPAT+V V D V R+G RT +Y V IEKRV A AAEC+ DRSPP P D A A RDRGAGRPTKRDRREIDR R
Sbjct: 34 NGSDAKPATKVKVGDEVVVRQGGRTRIYDVVRIIEKRVGAPIAAECYVDRSPPPP--DPEFVAPTAVRDRGAGRPTKRDRREIDRYR 118
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A2D6UA73_9ACTN (RNA-binding protein S4 n=7 Tax=Actinobacteria TaxID=201174 RepID=A0A2D6UA73_9ACTN) HSP 1 Score: 87.0 bits (214), Expect = 4.420e-20 Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVR-DRPGEAVYARRDRGAGRPTKRDRREIDRLRGRR 270
N VAKPA++V V DVV A R DRT++YV +EKRVSA AA EDRSP + D V+A+RDRG+GRPTK+DRR ID+LRG R
Sbjct: 33 NGEVAKPASKVKVGDVVQAARRDRTIIYVAHELLEKRVSAPLAAAAVEDRSPXXXKKQDHLDLPVFAQRDRGSGRPTKKDRRAIDKLRGER 123
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001FB9046F (S4 domain-containing protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=UPI001FB9046F) HSP 1 Score: 86.3 bits (212), Expect = 6.100e-20 Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
N A KPA++V V D V A R + VV+ + KRV A A EC+ED SP P RD EA +A+RDRGAGRPTKRDRR+IDRLRGR
Sbjct: 22 NGADVKPASKVVVGDRVEALLNRRQRIVVVRRVLSKRVGAAIAVECYEDESPAPPERDEL-EAAFAQRDRGAGRPTKRDRRQIDRLRGR 109
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A6C7EC69_ILUCY (RNA-binding protein n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7EC69_ILUCY) HSP 1 Score: 84.0 bits (206), Expect = 7.180e-19 Identity = 54/90 (60.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAV-YARRDRGAGRPTKRDRREIDRLRGR 267
N AKPAT V V D V AR G R V V A I KRV A AA+CF D SPP P DR +AV + RDRGAGRPTKRDRR+ D+LRGR
Sbjct: 37 NGKSAKPATPVKVGDRVEARLGQRERVAEVTAVIAKRVGAAIAADCFVDHSPPPP--DRVSDAVLFGVRDRGAGRPTKRDRRQTDKLRGR 124
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A2E0RU25_9ACTN (RNA-binding protein S4 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RU25_9ACTN) HSP 1 Score: 83.2 bits (204), Expect = 1.370e-18 Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
N A KPA++V V D V A R + V+ KRV A A EC++D SP P RD EA +A+RDRGAGRPTKRDRR+IDRLRGR
Sbjct: 34 NGAPVKPASKVVVGDRVEALLNGRRRIVVITEVRSKRVGAAVAVECYDDESPAPPERDE-FEAAFAQRDRGAGRPTKRDRRQIDRLRGR 121
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001012AE8F (S4 domain-containing protein n=1 Tax=Cellulomonas endophytica TaxID=2494735 RepID=UPI001012AE8F) HSP 1 Score: 83.2 bits (204), Expect = 1.370e-18 Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 13 AKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
AKPAT V D V AR GDR V VV+ + KRV A A C+ DRSP P ++ AV A+RDRGAGRPTKR+RREIDRLRGR
Sbjct: 41 AKPATMVVPGDEVRARVGDRERVLVVQRLVVKRVGAAVAVGCYLDRSPAPPPKEHT--AVAAQRDRGAGRPTKRERREIDRLRGR 123
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: F6FV66_ISOV2 (RNA-binding S4 domain protein n=1 Tax=Isoptericola variabilis (strain 225) TaxID=743718 RepID=F6FV66_ISOV2) HSP 1 Score: 82.4 bits (202), Expect = 2.540e-18 Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRG 264
N VAKP+T V V D VT R R + VVK + KRV A A E +ED+SPP P R+ AV R+RGAGRPTKR+RREIDRLRG
Sbjct: 31 NGVVAKPSTPVKVGDRVTWRDPLRDRIVVVKELLPKRVGAPLAVEAYEDQSPPVPTREE--RAVVGLRERGAGRPTKRERREIDRLRG 116
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI001F382784 (S4 domain-containing protein n=1 Tax=Cellulomonas fulva TaxID=2835530 RepID=UPI001F382784) HSP 1 Score: 82.0 bits (201), Expect = 2.550e-18 Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 13 AKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLRGR 267
AKPAT V D V R G+R V +V+ TI KRV A A C+ DRSP P R++ AV A RDRGAGRPTKR+RREIDRLRGR
Sbjct: 24 AKPATIVVPGDEVHVRGGERERVVIVQRTIVKRVGAAVAVTCYLDRSPAVPPREQV--AVAAVRDRGAGRPTKRERREIDRLRGR 106
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: UPI0012EA4651 (RNA-binding S4 domain-containing protein n=1 Tax=Actinokineospora pegani TaxID=2654637 RepID=UPI0012EA4651) HSP 1 Score: 82.4 bits (202), Expect = 2.970e-18 Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVYARRDRGAGRPTKRDRREIDRLR 261
ND AKPAT + D V AR GDRT + V IEKRV A +AA C D SPP P +D P +A ARR+RGAGRPTKR+RR +D+ R
Sbjct: 37 NDRPAKPATPISPGDTVRARIGDRTRLVEVVRVIEKRVGAPEAALCLIDNSPPPPSKD-PLQAPIARRERGAGRPTKRERRVLDQFR 122
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Match: A0A6I4MND9_9ACTN (RNA-binding S4 domain-containing protein n=6 Tax=Actinomadura TaxID=1988 RepID=A0A6I4MND9_9ACTN) HSP 1 Score: 81.6 bits (200), Expect = 7.120e-18 Identity = 50/89 (56.18%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRSPPAPVRDRPGEAVY--ARRDRGAGRPTKRDRREIDRLR 261
ND AKPAT V + D V R R + VV+ + KRV A AAEC D+SPP P P EA+ RRDRGAGRPTKRDRRE+DRLR
Sbjct: 37 NDERAKPATAVKIGDEVRLRHDGRERIVVVQKIVRKRVGAPAAAECLIDKSPPPP----PREALIPIGRRDRGAGRPTKRDRRELDRLR 121 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124449.4972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124449.4972.1 >prot_M-pyrifera_M_contig124449.4972.1 ID=prot_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp NDAVAKPATRVDVDDVVTARRGDRTLVYVVKATIEKRVSAVKAAECFEDRback to top mRNA from alignment at M-pyrifera_M_contig124449:240..518- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124449.4972.1 ID=mRNA_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig124449:240..518- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124449:240..518- >mRNA_M-pyrifera_M_contig124449.4972.1 ID=mRNA_M-pyrifera_M_contig124449.4972.1|Name=mRNA_M-pyrifera_M_contig124449.4972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig124449:240..518- (Macrocystis pyrifera P11B4 male)back to top |