mRNA_M-pyrifera_M_contig124273.4945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124273.4945.1
Unique NamemRNA_M-pyrifera_M_contig124273.4945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: R1FFI5_EMIHU (U-box domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFI5_EMIHU)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-19
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEGY 234
            P  ++CPIT ++M DPV+   DGHTY+R A+E WFA+ + +SPKTGA +D    +PNHA+R QIIEW E +
Sbjct:   26 PEIFVCPITQELMQDPVMA-TDGHTYERHAVERWFAT-RLTSPKTGAALDLALLLPNHAMRHQIIEWREAH 94          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A7S4D0S3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D0S3_9EUGL)

HSP 1 Score: 84.7 bits (208), Expect = 7.290e-19
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEG 231
            P  + CPIT D+MADPVL  ADGHTY+RAA+  WF SG R+SP T   + ++  +PN ALR+QII  AEG
Sbjct:   65 PHEFHCPITQDVMADPVLA-ADGHTYERAAVTRWFYSGHRTSPSTNLPLPSMLLIPNIALRSQIIAMAEG 133          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A7S3AKT9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AKT9_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 2.970e-18
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 DAPSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEW 222
            DA  A++CPI+ D+M DPV C ADGHTY+R+ +E W A+G  +SP TGA + ++  VPNHALR  I EW
Sbjct:    6 DALHAFVCPISGDVMRDPVSC-ADGHTYERSEIERWLATGACTSPSTGARLPHLHVVPNHALRCAIEEW 73          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A7S1T0G1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T0G1_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 3.700e-18
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    4 AEATDAPSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWA 225
            A+   APS++ CPI+MD+MADPV+ +A GHTYDR+ +E W A G R+ P TG  + +++  PN ALR+ I +WA
Sbjct:  105 AKGLKAPSSFFCPISMDLMADPVM-VATGHTYDRSCIERWLAQGHRTCPATGVRLRHLELTPNFALRSAIQDWA 177          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: F0YN19_AURAN (U-box domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN19_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 4.320e-18
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQI 213
            P AY CPIT ++M +PV+C ADGHTY++AA+E WF   K +SPKTG  +D+   VPN A+R+ I
Sbjct:    1 PDAYTCPITRELMREPVVC-ADGHTYEKAAIEAWFLEDKSTSPKTGLALDSKHLVPNFAIRSAI 63          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A8J2WWT7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWT7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.810e-18
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAE 228
            PS + C IT ++M+DP +  ADGHTY+R A++ WFA+G R+SP T   + ++Q +PNHALRA I+E  E
Sbjct:   51 PSKFYCCITTEVMSDPCMA-ADGHTYERCAIDQWFATGARTSPTTNEPLASLQLIPNHALRAMIVEELE 118          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A8J4DD08_9CHLO (U-box domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DD08_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 9.080e-18
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   19 APSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEGY 234
            APS++ CPI+M++MADPV+ +A GHTYDR  +E W A G R+ P TG  + +++  PN+ALRA I EWA  +
Sbjct:   55 APSSFYCPISMELMADPVM-VATGHTYDRQCIEKWLAQGNRTCPVTGMRLRHLELTPNYALRAAIQEWASAH 125          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: L1JWW5_GUITC (U-box domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JWW5_GUITC)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-17
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   16 DAPSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEGYNK 240
            D P  Y CPITMD+M DPV+ + DGHTY+R A+E W  + K+S PKT   + +   +PNHAL++ IIEW E   K
Sbjct:  128 DIPFEYQCPITMDVMTDPVIAM-DGHTYERQAIESWLKNHKKS-PKTNLPLPSNMLIPNHALKSMIIEWKESRKK 200          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: A0A1R3G250_COCAP (RING-type E3 ubiquitin transferase n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3G250_COCAP)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEGYN-KIARKSMPETERIGSEGAGEEI 303
            P  +LCPIT+DIM+DPV+ IA G TY+R +++ WF S  R+ PKT  T+D++   PN AL+  I +W E  N K+ +K  PE+ +  SE   EEI
Sbjct:  585 PCEFLCPITLDIMSDPVI-IASGQTYERKSIQTWFDSKHRTCPKTRQTLDHLLVAPNFALKNLISQWCEKNNFKLPKKEDPESSQGSSEDHKEEI 678          
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Match: R1D2B9_EMIHU (U-box domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D2B9_EMIHU)

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-17
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   22 PSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSPKTGATIDNIQTVPNHALRAQIIEWAEGY 234
            P  ++CPIT ++M+DPV+  ADGH+Y+R+A+E W AS K +SP TG  +++   +PNH LR QI EW E +
Sbjct:    3 PHDFVCPITTEVMSDPVMA-ADGHSYERSAIERWLAS-KSTSPLTGGELEHRILIPNHTLRRQIGEWHEAH 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124273.4945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1FFI5_EMIHU1.130e-1953.52U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4D0S3_9EUGL7.290e-1957.14Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3AKT9_9EUKA2.970e-1855.07Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1T0G1_9CHLO3.700e-1850.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
F0YN19_AURAN4.320e-1854.69U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A8J2WWT7_9STRA7.810e-1850.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J4DD08_9CHLO9.080e-1851.39U-box domain-containing protein n=1 Tax=Volvox ret... [more]
L1JWW5_GUITC1.180e-1750.67U-box domain-containing protein n=3 Tax=Guillardia... [more]
A0A1R3G250_COCAP1.500e-1746.32RING-type E3 ubiquitin transferase n=1 Tax=Corchor... [more]
R1D2B9_EMIHU3.300e-1749.30U-box domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124273contigM-pyrifera_M_contig124273:204..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog2903.EOD37830
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Modified RING finger domain
EggNOG OGs2E6WK@1,2SDJ3@2759
Ec32 ortholog descriptionU box domain
Ec32 orthologEc-22_002200.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.2846668-CDS-M-pyrifera_M_contig124273:203..5061622815760.2846668-CDS-M-pyrifera_M_contig124273:203..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124273 204..506 -
1692277556.5265126-CDS-M-pyrifera_M_contig124273:203..5061692277556.5265126-CDS-M-pyrifera_M_contig124273:203..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124273 204..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124273.4945.1prot_M-pyrifera_M_contig124273.4945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124273 204..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124273.4945.1

>prot_M-pyrifera_M_contig124273.4945.1 ID=prot_M-pyrifera_M_contig124273.4945.1|Name=mRNA_M-pyrifera_M_contig124273.4945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
AAEATDAPSAYLCPITMDIMADPVLCIADGHTYDRAALEHWFASGKRSSP
KTGATIDNIQTVPNHALRAQIIEWAEGYNKIARKSMPETERIGSEGAGEE
I
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mRNA from alignment at M-pyrifera_M_contig124273:204..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124273.4945.1 ID=mRNA_M-pyrifera_M_contig124273.4945.1|Name=mRNA_M-pyrifera_M_contig124273.4945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig124273:204..506- (Macrocystis pyrifera P11B4 male)
GCAGCTGAAGCTACAGATGCTCCTTCAGCATATCTTTGCCCCATTACAAT GGATATTATGGCTGATCCTGTGTTGTGTATTGCGGATGGACATACGTATG ATCGTGCAGCACTGGAACATTGGTTTGCTTCTGGGAAGCGTTCATCTCCC AAAACAGGAGCAACCATTGACAACATCCAAACTGTGCCAAACCATGCCTT ACGTGCTCAGATTATTGAATGGGCAGAAGGGTACAATAAAATTGCACGGA AGTCAATGCCAGAAACGGAACGAATAGGGAGCGAGGGAGCTGGAGAAGAA ATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124273:204..506-

>mRNA_M-pyrifera_M_contig124273.4945.1 ID=mRNA_M-pyrifera_M_contig124273.4945.1|Name=mRNA_M-pyrifera_M_contig124273.4945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig124273:204..506- (Macrocystis pyrifera P11B4 male)
GCAGCTGAAGCTACAGATGCTCCTTCAGCATATCTTTGCCCCATTACAAT
GGATATTATGGCTGATCCTGTGTTGTGTATTGCGGATGGACATACGTATG
ATCGTGCAGCACTGGAACATTGGTTTGCTTCTGGGAAGCGTTCATCTCCC
AAAACAGGAGCAACCATTGACAACATCCAAACTGTGCCAAACCATGCCTT
ACGTGCTCAGATTATTGAATGGGCAGAAGGGTACAATAAAATTGCACGGA
AGTCAATGCCAGAAACGGAACGAATAGGGAGCGAGGGAGCTGGAGAAGAA
ATTGCAGCTGAAGCTACAGATGCTCCTTCAGCATATCTTTGCCCCATTAC
AATGGATATTATGGCTGATCCTGTGTTGTGTATTGCGGATGGACATACGT
ATGATCGTGCAGCACTGGAACATTGGTTTGCTTCTGGGAAGCGTTCATCT
CCCAAAACAGGAGCAACCATTGACAACATCCAAACTGTGCCAAACCATGC
CTTACGTGCTCAGATTATTGAATGGGCAGAAGGGTACAATAAAATTGCAC
GGAAGTCAATGCCAGAAACGGAACGAATAGGGAGCGAGGGAGCTGGAGAA
GAAATT
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