mRNA_M-pyrifera_M_contig123868.4885.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123868.4885.1
Unique NamemRNA_M-pyrifera_M_contig123868.4885.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: UPI00118A29B3 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118A29B3)

HSP 1 Score: 107 bits (267), Expect = 1.040e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 RSDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            RSDGK+KFDMKANERREDAIVRNLLKGSRVVVITLGKDHDL DNIRRLSPKVRYRR
Sbjct:  166 RSDGKVKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLHDNIRRLSPKVRYRR 221          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A517W8M0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W8M0_9PLAN)

HSP 1 Score: 100 bits (250), Expect = 3.150e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    4 SDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            SDG  +FDMKANE+REDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR
Sbjct:  167 SDGSDEFDMKANEKREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 221          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A517WSC5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WSC5_9PLAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.580e-18
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 RSDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            RSDGK+ FD KA+E+REDAIVRNLLKGS VVVITLG++H L DNI+RLSP V+YRR
Sbjct:  166 RSDGKVVFDKKADEKREDAIVRNLLKGSGVVVITLGENHILGDNIQRLSPGVKYRR 221          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A517VRR8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VRR8_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 4.960e-17
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 RSDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRY 162
            R DGKI FD +A+ERREDAIVRNLLKGS VVVI LG+DHDL+DN++RL P V+Y
Sbjct:  166 RDDGKIVFDKEADERREDAIVRNLLKGSGVVVIVLGEDHDLRDNLKRLGPGVKY 219          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: UPI001187CFCB (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI001187CFCB)

HSP 1 Score: 71.6 bits (174), Expect = 7.050e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 RSDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            RSDG   FD  A+ERREDAIV NLLKGS VVVI LG+DHDL++N++RL   V+Y+R
Sbjct:  152 RSDGWGVFDKNADERREDAIVVNLLKGSGVVVIVLGEDHDLRENLKRLGASVKYKR 207          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A518IKR5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IKR5_9PLAN)

HSP 1 Score: 68.6 bits (166), Expect = 1.340e-12
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 RSDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            R+DG + FD KA+E REDAIVRNLLK   VVVITLG  HDL DN++RL+   +Y R
Sbjct:  166 RADGTVVFDKKADEAREDAIVRNLLKADGVVVITLGGAHDLSDNLKRLAKGCKYER 221          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A5A8BFQ7_9PLAN (Uncharacterized protein n=4 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BFQ7_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.030e-11
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   13 KIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRY 162
            KI+FD  ANERREDAIV NLLK     VI LGKDH+LQDN+ RL    +Y
Sbjct:  164 KIEFDKNANERREDAIVGNLLKAEGTAVILLGKDHNLQDNLNRLGASCKY 213          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A518FIP9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FIP9_9PLAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.510e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   13 KIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRY 162
            K++FD KANERREDAIVRNL+K   V VI LG+DH+L+DN+ +L    +Y
Sbjct:  164 KVEFDKKANERREDAIVRNLMKAKGVAVILLGEDHNLRDNMLQLGVSSKY 213          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A6CFP0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6CFP0_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 8.670e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   22 FDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            F + A+E  EDAIVRNL KGS VVVITLG  HDL+DN++RL    +Y+R
Sbjct:   19 FKLCADETPEDAIVRNLWKGSGVVVITLGVGHDLRDNLKRLGVACKYQR 67          
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Match: A0A517VML1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VML1_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-9
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 SDGKIKFDMKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR 168
            +DG +  D KA+E REDAIV+NL+K   VVVI LG  HDL DNI+R     +Y R
Sbjct:  169 ADGSVVIDKKADEAREDAIVKNLMKADGVVVIILGGGHDLSDNIKRAESNCKYER 223          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123868.4885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
UPI00118A29B31.040e-2696.43hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A517W8M0_9PLAN3.150e-2492.73Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517WSC5_9PLAN2.580e-1876.79Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517VRR8_9PLAN4.960e-1774.07Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
UPI001187CFCB7.050e-1466.07hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A518IKR5_9PLAN1.340e-1262.50Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A5A8BFQ7_9PLAN4.030e-1164.00Uncharacterized protein n=4 Tax=Gimesia chilikensi... [more]
A0A518FIP9_9PLAN1.510e-1060.00Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A6CFP0_9PLAN8.670e-1061.22Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
A0A517VML1_9PLAN1.500e-954.55Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123868contigM-pyrifera_M_contig123868:353..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.2443497-CDS-M-pyrifera_M_contig123868:352..4931622815757.2443497-CDS-M-pyrifera_M_contig123868:352..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123868 353..493 -
1692277555.0690272-CDS-M-pyrifera_M_contig123868:352..4931692277555.0690272-CDS-M-pyrifera_M_contig123868:352..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123868 353..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.261624-UTR-M-pyrifera_M_contig123868:493..5201622815757.261624-UTR-M-pyrifera_M_contig123868:493..520Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123868 494..520 -
1692277555.0776045-UTR-M-pyrifera_M_contig123868:493..5201692277555.0776045-UTR-M-pyrifera_M_contig123868:493..520Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123868 494..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123868.4885.1prot_M-pyrifera_M_contig123868.4885.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123868 353..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123868.4885.1

>prot_M-pyrifera_M_contig123868.4885.1 ID=prot_M-pyrifera_M_contig123868.4885.1|Name=mRNA_M-pyrifera_M_contig123868.4885.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MKANERREDAIVRNLLKGSRVVVITLGKDHDLQDNIRRLSPKVRYRR
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mRNA from alignment at M-pyrifera_M_contig123868:353..520-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123868.4885.1 ID=mRNA_M-pyrifera_M_contig123868.4885.1|Name=mRNA_M-pyrifera_M_contig123868.4885.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig123868:353..520- (Macrocystis pyrifera P11B4 male)
CGGTCTGATGGTAAGATCAAATTTGATATGAAAGCAAATGAGAGGCGTGA GGACGCTATTGTAAGGAACCTTTTGAAGGGTAGTAGAGTGGTTGTGATCA CACTTGGAAAAGATCATGACTTGCAAGATAACATTCGAAGGCTGAGCCCG AAAGTGAGGTATCGTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123868:353..520-

>mRNA_M-pyrifera_M_contig123868.4885.1 ID=mRNA_M-pyrifera_M_contig123868.4885.1|Name=mRNA_M-pyrifera_M_contig123868.4885.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig123868:353..520- (Macrocystis pyrifera P11B4 male)
ATGAAAGCAAATGAGAGGCGTGAGGACGCTATTGTAAGGAACCTTTTGAA
GGGTAGTAGAGTGGTTGTGATCACACTTGGAAAAGATCATGACTTGCAAG
ATAACATTCGAAGGCTGAGCCCGAAAGTGAGGTATCGTCGCATGAAAGCA
AATGAGAGGCGTGAGGACGCTATTGTAAGGAACCTTTTGAAGGGTAGTAG
AGTGGTTGTGATCACACTTGGAAAAGATCATGACTTGCAAGATAACATTC
GAAGGCTGAGCCCGAAAGTGAGGTATCGTCGC
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