mRNA_M-pyrifera_M_contig12358.4826.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12358.4826.1
Unique NamemRNA_M-pyrifera_M_contig12358.4826.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A3M2HQT5_9GAMM (Uncharacterized protein n=1 Tax=Lysobacter pythonis TaxID=2483112 RepID=A0A3M2HQT5_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-7
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    4 ISIASNSGKYTPLLTAAR---YGDPHLVEYLLAQGADVHAELEWGDNALHFAV-DNDADVFRLLLNAGADVNHLNDKRQSPLSSAMQNCNIRIVE 276
            + + +  G+ TPLL A R   +G P  V  LLA GADV A    G   LH A    D  V  LLL+A A+++ L+D+RQSPL+ A Q  N R+ +
Sbjct:  304 VPLTAAPGQPTPLLAATRDSWHGRPEAVMTLLANGADVRARDGDGRTPLHHAARSTDPSVAALLLDAAAEIDALDDQRQSPLALACQAGNWRMAK 398          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A6G0XJN4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJN4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.990e-7
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 DISIASNSGKYTPLLTAARYGDPHLVEYLLAQGADVHAELEWGDNALHFAVD-NDADVFRLLLNAGADVNHLNDKRQSPLSSAM 249
            D+ + S   + TPL+ AA  G   ++EYLL QGADV AE + G+ ALHFA D        +LL AGAD++  N  R++P   AM
Sbjct:  111 DVDVMSK--QKTPLMLAATLGRVDIMEYLLDQGADVFAENDEGNTALHFACDAGHVYATYVLLTAGADLDLPNQARKTPEDVAM 192          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: UPI000B2D2B0F (ankyrin repeat domain-containing protein n=1 Tax=Endozoicomonas ascidiicola TaxID=1698521 RepID=UPI000B2D2B0F)

HSP 1 Score: 57.0 bits (136), Expect = 7.380e-7
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   34 TPLLTAARYGDPHLVEYLLAQGADVHAELEWGDNALHFAVDN-DADVFRLLLNAGADVNHL--NDKRQSPLSSAMQNCNIRIVEM 279
            TPL+ AA      +VEYLL +GADVHAE + G  A+HFA +  + ++  +L+ +GADV+H   + K + PL  A+ N  +   E+
Sbjct: 2229 TPLICAATNEQLSVVEYLLNEGADVHAEQDEGFTAIHFAAETGEENLLNILIKSGADVDHQAWDYKEKFPLCIAVTNQKLAAAEV 2313          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A4V3UU96_9GAMM (Uncharacterized protein n=1 Tax=Pseudofulvimonas gallinarii TaxID=634155 RepID=A0A4V3UU96_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 2.440e-6
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   34 TPLLTAAR---YGDPHLVEYLLAQGADVHAELEWGDNALHFA-VDNDADVFRLLLNAGADVNHLNDKRQSPLSSAMQNCNI 264
            TPLL A R   YG P +V  L+A GAD+H   E G  ALH A + ++  V  +LL+AGA V+ ++D+  +PL+ A  + NI
Sbjct:  317 TPLLLATRDSYYGRPEIVLALIANGADIHVRDEAGRTALHHAALSSEPAVLAMLLDAGAQVDAVDDEGYTPLAWACAHGNI 397          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A1N6S9C0_9GAMM (Uncharacterized protein n=1 Tax=Lysobacter tolerans TaxID=1604334 RepID=A0A1N6S9C0_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 4.570e-6
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    4 ISIASNSGKYTPLLTAAR---YGDPHLVEYLLAQGADVHAELEWGDNALHFAV-DNDADVFRLLLNAGADVNHLNDKRQSPLSSAMQNCNIRIVE 276
            + + +  G+ T LL A R   +G P  V  LLA GAD  A    G+  LH A    D  V  LLL+A A+++ +ND RQSPL+ A    N R+ +
Sbjct:  358 LPLGAEPGRLTALLAATRDSWHGRPEAVMTLLANGADPRARDAEGNTPLHHAACSTDPGVAALLLDAAAEIDAINDARQSPLAMACLVGNWRLAK 452          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: UPI001BE6517D (M48 family metallopeptidase n=1 Tax=Planococcus sp. ISL-109 TaxID=2819166 RepID=UPI001BE6517D)

HSP 1 Score: 53.1 bits (126), Expect = 1.410e-5
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   34 TPLLTAARYGDPHLVEYLLAQGADVHAELEWGDNALHFAV-DNDADVFRLLLNAGADVNHLND 219
            TPL+ AA  GD   VE +LA G D+HA+   G +AL +A+   DAD+   LL+AGADVN ++D
Sbjct:  310 TPLMAAAGEGDLAGVEQVLADGEDIHAKDAEGADALMYAMYSGDADIINALLDAGADVNTVDD 372          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A7Y4JBI9_MYXXA (Ankryin n=1 Tax=Myxococcus xanthus TaxID=34 RepID=A0A7Y4JBI9_MYXXA)

HSP 1 Score: 52.4 bits (124), Expect = 2.660e-5
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   67 PHLVEYLLAQGADVHAELEWGDNALHFAVDN---------DADVFRLLLNAGADVNHLNDKRQSPLSSAM 249
            P  V+ LL+QGADVH   ++G   LHFAV             DV R+LL AGAD N L+D  Q+PL  A+
Sbjct:   29 PERVKDLLSQGADVHGRGDYGSTPLHFAVLAPYQREHPLPSVDVVRILLEAGADSNTLDDHAQTPLLRAL 98          
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Match: A0A2M9EMK0_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadaceae bacterium NML120232 TaxID=2032575 RepID=A0A2M9EMK0_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-5
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    4 ISIASNSGKYTPLLTAAR---YGDPHLVEYLLAQGADVHAELEWGDNALHFAV-DNDADVFRLLLNAGADVNHLNDKRQSPLSSAMQNCNIRIVE 276
            +S+A+  GK +PLL A R   +G P  V  LLA GA+     + G   LH A    D  V  LLL+AGA++  LN   QSPL+ A    N R+++
Sbjct:  309 VSVAAAPGKPSPLLAATRDSWHGRPEAVMTLLANGANPGETDDEGCTPLHHAARSTDPSVAALLLDAGAELEALNQAGQSPLAQAALVGNWRMLK 403          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12358.4826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3M2HQT5_9GAMM1.510e-742.11Uncharacterized protein n=1 Tax=Lysobacter pythoni... [more]
A0A6G0XJN4_9STRA2.990e-744.05Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI000B2D2B0F7.380e-740.00ankyrin repeat domain-containing protein n=1 Tax=E... [more]
A0A4V3UU96_9GAMM2.440e-643.21Uncharacterized protein n=1 Tax=Pseudofulvimonas g... [more]
A0A1N6S9C0_9GAMM4.570e-638.95Uncharacterized protein n=1 Tax=Lysobacter toleran... [more]
UPI001BE6517D1.410e-549.21M48 family metallopeptidase n=1 Tax=Planococcus sp... [more]
A0A7Y4JBI9_MYXXA2.660e-545.71Ankryin n=1 Tax=Myxococcus xanthus TaxID=34 RepID=... [more]
A0A2M9EMK0_9GAMM2.920e-540.00Uncharacterized protein n=1 Tax=Xanthomonadaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12358contigM-pyrifera_M_contig12358:5172..5555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue8.9e-07
Seed eggNOG ortholog27923.ML055914a-PA
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006497,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.DHHC palmitoyltransferase
EggNOG OGs38BPT@33154,3BG57@33208,COG5273@1,KOG0509@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
EC2.3.1.225
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.2717962-CDS-M-pyrifera_M_contig12358:5171..55551622815754.2717962-CDS-M-pyrifera_M_contig12358:5171..5555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12358 5172..5555 +
1692277553.6861818-CDS-M-pyrifera_M_contig12358:5171..55551692277553.6861818-CDS-M-pyrifera_M_contig12358:5171..5555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12358 5172..5555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12358.4826.1prot_M-pyrifera_M_contig12358.4826.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12358 5172..5555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12358.4826.1

>prot_M-pyrifera_M_contig12358.4826.1 ID=prot_M-pyrifera_M_contig12358.4826.1|Name=mRNA_M-pyrifera_M_contig12358.4826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
DISIASNSGKYTPLLTAARYGDPHLVEYLLAQGADVHAELEWGDNALHFA
VDNDADVFRLLLNAGADVNHLNDKRQSPLSSAMQNCNIRIVEMLLAAGAD
VNSADENGDTPLTLALFRGDENCASLLR
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mRNA from alignment at M-pyrifera_M_contig12358:5172..5555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12358.4826.1 ID=mRNA_M-pyrifera_M_contig12358.4826.1|Name=mRNA_M-pyrifera_M_contig12358.4826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig12358:5172..5555+ (Macrocystis pyrifera P11B4 male)
GACATCTCTATTGCTTCAAATTCTGGCAAATACACACCACTGCTAACGGC AGCAAGGTACGGAGATCCACATCTGGTTGAGTATCTCTTGGCCCAGGGAG CAGATGTGCATGCCGAATTGGAGTGGGGCGATAATGCGCTCCACTTTGCA GTAGACAACGATGCTGACGTCTTCCGGCTGCTTCTCAATGCCGGTGCTGA CGTCAACCACTTGAACGACAAGAGGCAGTCTCCCCTCTCAAGTGCCATGC AAAATTGCAACATACGCATCGTCGAGATGCTGTTGGCCGCAGGGGCCGAT GTGAATAGCGCTGATGAGAACGGGGACACACCCCTCACCCTTGCTTTGTT CCGCGGCGATGAAAATTGCGCATCGCTTCTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12358:5172..5555+

>mRNA_M-pyrifera_M_contig12358.4826.1 ID=mRNA_M-pyrifera_M_contig12358.4826.1|Name=mRNA_M-pyrifera_M_contig12358.4826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig12358:5172..5555+ (Macrocystis pyrifera P11B4 male)
GACATCTCTATTGCTTCAAATTCTGGCAAATACACACCACTGCTAACGGC
AGCAAGGTACGGAGATCCACATCTGGTTGAGTATCTCTTGGCCCAGGGAG
CAGATGTGCATGCCGAATTGGAGTGGGGCGATAATGCGCTCCACTTTGCA
GTAGACAACGATGCTGACGTCTTCCGGCTGCTTCTCAATGCCGGTGCTGA
CGTCAACCACTTGAACGACAAGAGGCAGTCTCCCCTCTCAAGTGCCATGC
AAAATTGCAACATACGCATCGTCGAGATGCTGTTGGCCGCAGGGGCCGAT
GTGAATAGCGCTGATGAGAACGGGGACACACCCCTCACCCTTGCTTTGTT
CCGCGGCGATGAAAATTGCGCATCGCTTCTGCGCGACATCTCTATTGCTT
CAAATTCTGGCAAATACACACCACTGCTAACGGCAGCAAGGTACGGAGAT
CCACATCTGGTTGAGTATCTCTTGGCCCAGGGAGCAGATGTGCATGCCGA
ATTGGAGTGGGGCGATAATGCGCTCCACTTTGCAGTAGACAACGATGCTG
ACGTCTTCCGGCTGCTTCTCAATGCCGGTGCTGACGTCAACCACTTGAAC
GACAAGAGGCAGTCTCCCCTCTCAAGTGCCATGCAAAATTGCAACATACG
CATCGTCGAGATGCTGTTGGCCGCAGGGGCCGATGTGAATAGCGCTGATG
AGAACGGGGACACACCCCTCACCCTTGCTTTGTTCCGCGGCGATGAAAAT
TGCGCATCGCTTCTGCGC
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