mRNA_M-pyrifera_M_contig123515.4808.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123515.4808.1
Unique NamemRNA_M-pyrifera_M_contig123515.4808.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 8.070e-50
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGADLWAKTQAQYFARESH+RPFL+VVNAIIKSELG LV+ASDLGQWQETLAILSTYAKQ+EFPTLCEALASRLETEAGDRKSANLCYM
Sbjct:  646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYM 736          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 9.220e-50
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGADLWAKTQAQYFARESH+RPFL+VVNAIIKSELG LVE SDLGQWQETLAILSTYAKQ+EFPTLCEALASRLETEAGDRKSANLCYM
Sbjct:  425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYM 515          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK)

HSP 1 Score: 127 bits (320), Expect = 6.220e-35
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGA+LWA TQA+YF     RRPFL ++  IIKSELG LV A+ LG W+ETLAILSTYAK DEFP LCEALA+RLE EA D  +A LCYM
Sbjct:   51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYM 141          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A7S0BZ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ92_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.200e-34
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGA+LWAKTQAQYF RE  +RP+LRVV+A+I S+L   V+ASD  QWQETLAILSTY K +EF +LC AL +RLE EAGD  +A+LCYM
Sbjct:   24 SCGGAELWAKTQAQYFDREVSKRPYLRVVSAVIHSQLAEFVQASDPLQWQETLAILSTYGKSEEFQSLCHALGTRLE-EAGDMPNASLCYM 113          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.830e-33
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGADLWAKTQAQYF  E   RPFL +V+AII+SEL  LV  S L  WQETLAILSTYAK +EFP LCE LA RLE+E+ D  SA LCYM
Sbjct:  100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYM 190          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A1E7FBK0_9STRA (WD40 repeat-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBK0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.090e-32
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGADLWAKTQ +YF  +S +RPFL VV AII++EL  L+++SDL  WQETLAILSTY K DEFP LC AL  RLE E+GD  SA+LC+M
Sbjct:  560 SCGGADLWAKTQERYFESQSSKRPFLSVVGAIIRNELPSLIQSSDLATWQETLAILSTYGKSDEFPQLCVALGDRLE-ESGDHSSASLCFM 649          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A7S2EHQ9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHQ9_TRICV)

HSP 1 Score: 118 bits (295), Expect = 8.040e-32
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    7 GGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            GG+DLWA+ QA+YF RE+ +RPFL VV+A+I + L GLVE SD  +W+ETLAILSTY K DEFP LC  L  RLE  AGD K+A+LCYM
Sbjct:    1 GGSDLWARAQAEYFEREASKRPFLSVVSAVIHNRLDGLVEGSDPAKWRETLAILSTYGKSDEFPALCLKLGDRLEG-AGDMKNASLCYM 88          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 124 bits (312), Expect = 3.070e-31
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGA+LW +T+A+YF   S  +PFL VV AII +ELG LV ASDL +W+ETLAILSTY K DEFP LCEAL  RLE EA D K+A LCYM
Sbjct:  618 SCGGAELWERTRARYFDISSKAKPFLGVVRAIITNELGALVAASDLRKWEETLAILSTYGKSDEFPALCEALGGRLEHEARDDKAAALCYM 708          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A7S2BT72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT72_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.310e-31
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRP-FLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGA+LW +T+ +YF RE+ +RP FL +V AII S+L  LV +S L  W+ETLAILSTY K +EFP LCE L +RLE EA D+ SA LCYM
Sbjct:   18 SCGGAELWEQTRDRYFKREAAKRPEFLNIVTAIITSKLSDLVTSSHLADWRETLAILSTYGKSEEFPILCEQLGARLEAEADDKASAALCYM 109          
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Match: A0A6V2GAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GAE0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.290e-31
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM 273
            SCGGA+LWAKTQA+YFARE+ +RPFL +V+A+I ++L  LV ASD  +WQETLAILSTY K +EFP LC AL +RLE  AGD  SA+LC+M
Sbjct:  545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFM 634          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123515.4808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD9_9PHAE8.070e-5094.51WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBR5_ECTSI9.220e-5094.51Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A7S3UX94_HETAK6.220e-3569.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0BZ92_9STRA2.200e-3468.13Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2Y0E2_9STRA1.830e-3370.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1E7FBK0_9STRA5.090e-3267.03WD40 repeat-like protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S2EHQ9_TRICV8.040e-3264.04Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
F0YCL1_AURAN3.070e-3167.03Sec16_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S2BT72_9STRA6.310e-3160.87Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6V2GAE0_9STRA8.290e-3165.93Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123515contigM-pyrifera_M_contig123515:134..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D8LBR5
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.5788996-CDS-M-pyrifera_M_contig123515:133..4091622815753.5788996-CDS-M-pyrifera_M_contig123515:133..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123515 134..409 -
1692277553.3841128-CDS-M-pyrifera_M_contig123515:133..4091692277553.3841128-CDS-M-pyrifera_M_contig123515:133..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123515 134..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123515.4808.1prot_M-pyrifera_M_contig123515.4808.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123515 134..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123515.4808.1

>prot_M-pyrifera_M_contig123515.4808.1 ID=prot_M-pyrifera_M_contig123515.4808.1|Name=mRNA_M-pyrifera_M_contig123515.4808.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
SCGGADLWAKTQAQYFARESHRRPFLRVVNAIIKSELGGLVEASDLGQWQ
ETLAILSTYAKQDEFPTLCEALASRLETEAGDRKSANLCYM*
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mRNA from alignment at M-pyrifera_M_contig123515:134..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123515.4808.1 ID=mRNA_M-pyrifera_M_contig123515.4808.1|Name=mRNA_M-pyrifera_M_contig123515.4808.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig123515:134..409- (Macrocystis pyrifera P11B4 male)
AGCTGCGGTGGAGCGGACCTGTGGGCCAAGACTCAGGCGCAGTACTTCGC GCGGGAGTCGCACCGCCGCCCCTTCCTCCGGGTCGTGAACGCCATCATCA AGTCCGAGTTGGGGGGGTTGGTGGAGGCGTCTGACCTGGGACAGTGGCAG GAGACCCTGGCCATCCTCTCCACCTACGCCAAGCAGGACGAGTTCCCGAC CCTGTGCGAGGCGCTGGCCTCGAGGCTGGAGACGGAGGCGGGAGACCGCA AGTCGGCCAACCTTTGTTACATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123515:134..409-

>mRNA_M-pyrifera_M_contig123515.4808.1 ID=mRNA_M-pyrifera_M_contig123515.4808.1|Name=mRNA_M-pyrifera_M_contig123515.4808.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig123515:134..409- (Macrocystis pyrifera P11B4 male)
AGCTGCGGTGGAGCGGACCTGTGGGCCAAGACTCAGGCGCAGTACTTCGC
GCGGGAGTCGCACCGCCGCCCCTTCCTCCGGGTCGTGAACGCCATCATCA
AGTCCGAGTTGGGGGGGTTGGTGGAGGCGTCTGACCTGGGACAGTGGCAG
GAGACCCTGGCCATCCTCTCCACCTACGCCAAGCAGGACGAGTTCCCGAC
CCTGTGCGAGGCGCTGGCCTCGAGGCTGGAGACGGAGGCGGGAGACCGCA
AGTCGGCCAACCTTTGTTACATGTGAAGCTGCGGTGGAGCGGACCTGTGG
GCCAAGACTCAGGCGCAGTACTTCGCGCGGGAGTCGCACCGCCGCCCCTT
CCTCCGGGTCGTGAACGCCATCATCAAGTCCGAGTTGGGGGGGTTGGTGG
AGGCGTCTGACCTGGGACAGTGGCAGGAGACCCTGGCCATCCTCTCCACC
TACGCCAAGCAGGACGAGTTCCCGACCCTGTGCGAGGCGCTGGCCTCGAG
GCTGGAGACGGAGGCGGGAGACCGCAAGTCGGCCAACCTTTGTTACATGT
GA
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