mRNA_M-pyrifera_M_contig123145.4751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123145.4751.1
Unique NamemRNA_M-pyrifera_M_contig123145.4751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: D8RV26_SELML (Rab3 GTPase-activating protein catalytic subunit (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RV26_SELML)

HSP 1 Score: 108 bits (271), Expect = 8.470e-25
Identity = 72/179 (40.22%), Postives = 93/179 (51.96%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDSSPVAECGGHPGALGALEGKFLLHT--------------------GPEGNFL------PLYVPETQQTPLVTEDMLEEQQHLALA-----TARHRKQ---LAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE+ + LP   A     D  TCL  QKLQ+LA CI LR+    +  ++S   E G     L +   K  L +                    GP GN +      PL+VP TQ  P++TEDMLEE++H  +A     TAR R Q   LA+D+AAFKAANPG  + DFVRW+SP DW+
Sbjct:  421 WCWEERQLLPRTLADETP-DFSTCLSQQKLQMLATCIKLRKASDDAKGETSARKETGSSDAELSSSSKKTKLSSVDDNMNIDLFFNNEHRKGSAGPFGNSVLSSSNKPLHVPMTQTPPIMTEDMLEEREHALVALENSPTARIRLQSDILASDMAAFKAANPGAVLEDFVRWHSPRDWI 598          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A7S4IBV9_9EUKA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBV9_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.500e-23
Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 WHWEQARP--LPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQR---------------------SPSDSSPVA---ECGGHPGALGALEG-----KFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLALA---TARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            WHWEQ  P  +P V+  T +IDMR CL+ QKLQ++  C+ L  ++                       S  D S +    E     GA   LE       F+    P   F+  YVP+ Q   LV+EDM+EEQQ    +   +++H  QL +D+ +FKAANPGC  ADFVRWYSP+DWL
Sbjct:  120 WHWEQNPPKEIPLVSTPTESIDMRRCLIYQKLQMINYCVKLANQDHTLEETKKTNSFEKDGWEISFAVSEEDHSLLGLSDEIQTRHGAEKKLEPPTVLLNFMNDEDPSDRFI--YVPKIQSVGLVSEDMIEEQQQALESEGDSSQHHAQLKSDMQSFKAANPGCVFADFVRWYSPADWL 296          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A453IAE1_AEGTS (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IAE1_AEGTS)

HSP 1 Score: 95.5 bits (236), Expect = 1.480e-21
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRR--------EEQRSPSDSSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP +   T +ID+ +C++ QKLQ+LA CI  ++        ++      S+ +A      G+ G +    L++T     F  ++ P TQ  PL+TEDM EE+ H A        L+    R  L++D++AFKAANP     DF+RW+SP DW+
Sbjct:   22 WCWEESERLPRMKT-TSSIDLSSCVIHQKLQMLAICIERKKSLNRKKDTDDAHKEKTSNSMAPDKIRKGSAGVVPSMMLINT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAVGLSGQLERDILSSDMSAFKAANPDAAFEDFIRWHSPGDWV 176          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A1D6PCP6_MAIZE (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PCP6_MAIZE)

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-20
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCI----LLRREEQRSPSD--SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP + + T +ID+ +CL+ QKLQ+L  CI     L RE+     D  S+  A      G+ G +    LL+T     F  ++ P TQ  PL+TEDM EE+ H A        L+    R  L +D++AFKAANP     DF+RW+SP +WL
Sbjct:   84 WCWEESERLPRMKS-TSSIDLSSCLIHQKLQMLTICIERKRSLNREKGTGYKDETSNSTAVNKSRKGSAGVVPKMMLLNT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAIGLSGQLERDILCSDMSAFKAANPDAVFEDFIRWHSPGEWL 236          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A835LCI2_9MAGN (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LCI2_9MAGN)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-20
Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    7 WEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDS--SPVAECGG-------HPGALGAL-----EGKFLLHTG---PEGNFL------PLYVPETQQTPLVTEDMLEEQQHLALATARHR---KQLAADVAAFKAANPGCCMADFVRWYSPSDW 432
            W   +P+PHV       D+ TCLL Q+LQ++  C + R+  +   SDS  S + E G         PG+  AL      G  +L  G   P GN        P+Y P TQ+ P++TED+++E +   L T        QL +D+ AFKAANPGC + DFVRW+SP DW
Sbjct:  271 WSDGQPVPHVPLDESP-DLNTCLLHQQLQVI-NCCISRKTRRSMASDSLQSIMREAGPCTEAAVVSPGSSSALYARVSTGDLVLRLGAHQPSGNLTMLETGEPVYTPVTQEGPILTEDLIKEAEEFVLRTGSCGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDW 436          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A453IAJ1_AEGTS (Rab3 GTPase-activating protein catalytic subunit n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453IAJ1_AEGTS)

HSP 1 Score: 95.5 bits (236), Expect = 3.770e-20
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRR--------EEQRSPSDSSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP +   T +ID+ +C++ QKLQ+LA CI  ++        ++      S+ +A      G+ G +    L++T     F  ++ P TQ  PL+TEDM EE+ H A        L+    R  L++D++AFKAANP     DF+RW+SP DW+
Sbjct:  107 WCWEESERLPRMKT-TSSIDLSSCVIHQKLQMLAICIERKKSLNRKKDTDDAHKEKTSNSMAPDKIRKGSAGVVPSMMLINT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAVGLSGQLERDILSSDMSAFKAANPDAAFEDFIRWHSPGDWV 261          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A0E0CZ67_9ORYZ (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0CZ67_9ORYZ)

HSP 1 Score: 95.5 bits (236), Expect = 4.310e-20
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP + + T +ID+ TCL+ QKL +LA CI  ++   R            S+ VA+     G+ G +    LL+T     F  ++ P TQ   L+TEDM EE+ H A        L+    R  L++D++AFKAANP     DF+RW+SP DW+
Sbjct:  398 WCWEESERLPRMKS-TSSIDLCTCLIHQKLHMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNT-----FQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 552          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: J3LMU7_ORYBR (Rab3 GTPase-activating protein catalytic subunit n=11 Tax=Oryza TaxID=4527 RepID=J3LMU7_ORYBR)

HSP 1 Score: 95.5 bits (236), Expect = 4.350e-20
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP +   T  ID+ TCL+ QKL +LA CI  ++   R  S         S+  A+     G+ G +    LL+T     F  ++VP TQ   L+TEDM EE+ H A        L+    R  L++D++AFKAANP     DF+RW+SP DW+
Sbjct:  459 WCWEESERLPRMKT-TSKIDLSTCLIHQKLHMLAICIERKKSLSREKSTDHAHEDGISNNEAQNKTRKGSAGVVPSMMLLNT-----FQEMHVPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 613          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: Q10MT9_ORYSJ (Rab3 GTPase-activating protein catalytic subunit n=5 Tax=Oryza TaxID=4527 RepID=Q10MT9_ORYSJ)

HSP 1 Score: 95.5 bits (236), Expect = 4.350e-20
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP + + T +ID+ TCL+ QKL +LA CI  ++   R            S+ VA+     G+ G +    LL+T     F  ++ P TQ   L+TEDM EE+ H A        L+    R  L++D++AFKAANP     DF+RW+SP DW+
Sbjct:  464 WCWEESERLPRMKS-TSSIDLCTCLIHQKLHMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNT-----FQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 618          
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: C5WNH2_SORBI (Rab3 GTPase-activating protein catalytic subunit n=30 Tax=Panicoideae TaxID=147369 RepID=C5WNH2_SORBI)

HSP 1 Score: 95.1 bits (235), Expect = 5.920e-20
Identity = 60/159 (37.74%), Postives = 85/159 (53.46%), Query Frame = 1
Query:    1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCI----LLRREEQRSPSD--SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
            W WE++  LP + + T +ID+ +CL+ QKLQ+L  CI     L  E+     D  S+  A      G+ G +    LL+T     F  ++ P TQ  PL+TEDM EE+ H A        L+    R  L +D++AFKAANP     DF+RW+SP DW+
Sbjct:  457 WCWEESERLPRMKS-TSSIDLSSCLIHQKLQMLTICIERKKSLNHEKGAGYKDETSNSTAVDKSRKGSAGVVPKMMLLNT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAIGLSGQLERDILCSDMSAFKAANPDAVFEDFIRWHSPGDWV 609          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8RV26_SELML8.470e-2540.22Rab3 GTPase-activating protein catalytic subunit (... [more]
A0A7S4IBV9_9EUKA1.500e-2338.55Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A453IAE1_AEGTS1.480e-2134.78Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A1D6PCP6_MAIZE1.400e-2038.36Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A835LCI2_9MAGN1.650e-2038.10Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A453IAJ1_AEGTS3.770e-2034.78Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A0E0CZ67_9ORYZ4.310e-2036.65Rab3 GTPase-activating protein catalytic subunit n... [more]
J3LMU7_ORYBR4.350e-2037.27Rab3 GTPase-activating protein catalytic subunit n... [more]
Q10MT9_ORYSJ4.350e-2036.65Rab3 GTPase-activating protein catalytic subunit n... [more]
C5WNH2_SORBI5.920e-2037.74Rab3 GTPase-activating protein catalytic subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123145contigM-pyrifera_M_contig123145:90..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.1
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog88036.EFJ23888
KEGG koko:K18270
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab3 GTPase-activating protein catalytic
EggNOG OGs37NVX@33090,3GENF@35493,KOG2390@1,KOG2390@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.6113727-CDS-M-pyrifera_M_contig123145:89..5241622815750.6113727-CDS-M-pyrifera_M_contig123145:89..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123145 90..524 -
1692277551.9473217-CDS-M-pyrifera_M_contig123145:89..5241692277551.9473217-CDS-M-pyrifera_M_contig123145:89..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123145 90..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123145.4751.1prot_M-pyrifera_M_contig123145.4751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123145 90..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123145.4751.1

>prot_M-pyrifera_M_contig123145.4751.1 ID=prot_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDS
SPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLE
EQQHLALATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL
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mRNA from alignment at M-pyrifera_M_contig123145:90..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123145.4751.1 ID=mRNA_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig123145:90..524- (Macrocystis pyrifera P11B4 male)
TGGCATTGGGAACAGGCGCGGCCTCTGCCTCACGTGGCGGCGGCCACAGG CGCCATCGACATGCGCACCTGTCTGCTAGACCAGAAGCTGCAGCTGCTGG CTCGCTGTATTCTTCTGCGTCGTGAGGAACAGCGTAGTCCCTCAGACTCT TCTCCTGTCGCTGAGTGTGGCGGCCATCCTGGCGCCCTCGGTGCTCTGGA GGGGAAATTCCTCCTCCACACTGGGCCAGAGGGAAACTTTCTTCCTCTCT ATGTGCCTGAGACGCAACAGACGCCCTTGGTGACGGAGGATATGTTGGAG GAGCAGCAGCACCTGGCGCTGGCTACAGCTCGCCACCGCAAGCAGCTAGC TGCAGATGTCGCTGCTTTCAAGGCCGCTAACCCCGGCTGCTGCATGGCAG ACTTCGTGCGTTGGTATTCACCCTCCGATTGGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123145:90..524-

>mRNA_M-pyrifera_M_contig123145.4751.1 ID=mRNA_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig123145:90..524- (Macrocystis pyrifera P11B4 male)
TGGCATTGGGAACAGGCGCGGCCTCTGCCTCACGTGGCGGCGGCCACAGG
CGCCATCGACATGCGCACCTGTCTGCTAGACCAGAAGCTGCAGCTGCTGG
CTCGCTGTATTCTTCTGCGTCGTGAGGAACAGCGTAGTCCCTCAGACTCT
TCTCCTGTCGCTGAGTGTGGCGGCCATCCTGGCGCCCTCGGTGCTCTGGA
GGGGAAATTCCTCCTCCACACTGGGCCAGAGGGAAACTTTCTTCCTCTCT
ATGTGCCTGAGACGCAACAGACGCCCTTGGTGACGGAGGATATGTTGGAG
GAGCAGCAGCACCTGGCGCTGGCTACAGCTCGCCACCGCAAGCAGCTAGC
TGCAGATGTCGCTGCTTTCAAGGCCGCTAACCCCGGCTGCTGCATGGCAG
ACTTCGTGCGTTGGTATTCACCCTCCGATTGGCTCTGGCATTGGGAACAG
GCGCGGCCTCTGCCTCACGTGGCGGCGGCCACAGGCGCCATCGACATGCG
CACCTGTCTGCTAGACCAGAAGCTGCAGCTGCTGGCTCGCTGTATTCTTC
TGCGTCGTGAGGAACAGCGTAGTCCCTCAGACTCTTCTCCTGTCGCTGAG
TGTGGCGGCCATCCTGGCGCCCTCGGTGCTCTGGAGGGGAAATTCCTCCT
CCACACTGGGCCAGAGGGAAACTTTCTTCCTCTCTATGTGCCTGAGACGC
AACAGACGCCCTTGGTGACGGAGGATATGTTGGAGGAGCAGCAGCACCTG
GCGCTGGCTACAGCTCGCCACCGCAAGCAGCTAGCTGCAGATGTCGCTGC
TTTCAAGGCCGCTAACCCCGGCTGCTGCATGGCAGACTTCGTGCGTTGGT
ATTCACCCTCCGATTGGCTC
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