mRNA_M-pyrifera_M_contig123145.4751.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: D8RV26_SELML (Rab3 GTPase-activating protein catalytic subunit (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RV26_SELML) HSP 1 Score: 108 bits (271), Expect = 8.470e-25 Identity = 72/179 (40.22%), Postives = 93/179 (51.96%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDSSPVAECGGHPGALGALEGKFLLHT--------------------GPEGNFL------PLYVPETQQTPLVTEDMLEEQQHLALA-----TARHRKQ---LAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE+ + LP A D TCL QKLQ+LA CI LR+ + ++S E G L + K L + GP GN + PL+VP TQ P++TEDMLEE++H +A TAR R Q LA+D+AAFKAANPG + DFVRW+SP DW+
Sbjct: 421 WCWEERQLLPRTLADETP-DFSTCLSQQKLQMLATCIKLRKASDDAKGETSARKETGSSDAELSSSSKKTKLSSVDDNMNIDLFFNNEHRKGSAGPFGNSVLSSSNKPLHVPMTQTPPIMTEDMLEEREHALVALENSPTARIRLQSDILASDMAAFKAANPGAVLEDFVRWHSPRDWI 598
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A7S4IBV9_9EUKA (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBV9_9EUKA) HSP 1 Score: 105 bits (261), Expect = 1.500e-23 Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 1
Query: 1 WHWEQARP--LPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQR---------------------SPSDSSPVA---ECGGHPGALGALEG-----KFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLALA---TARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
WHWEQ P +P V+ T +IDMR CL+ QKLQ++ C+ L ++ S D S + E GA LE F+ P F+ YVP+ Q LV+EDM+EEQQ + +++H QL +D+ +FKAANPGC ADFVRWYSP+DWL
Sbjct: 120 WHWEQNPPKEIPLVSTPTESIDMRRCLIYQKLQMINYCVKLANQDHTLEETKKTNSFEKDGWEISFAVSEEDHSLLGLSDEIQTRHGAEKKLEPPTVLLNFMNDEDPSDRFI--YVPKIQSVGLVSEDMIEEQQQALESEGDSSQHHAQLKSDMQSFKAANPGCVFADFVRWYSPADWL 296
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A453IAE1_AEGTS (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IAE1_AEGTS) HSP 1 Score: 95.5 bits (236), Expect = 1.480e-21 Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRR--------EEQRSPSDSSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + T +ID+ +C++ QKLQ+LA CI ++ ++ S+ +A G+ G + L++T F ++ P TQ PL+TEDM EE+ H A L+ R L++D++AFKAANP DF+RW+SP DW+
Sbjct: 22 WCWEESERLPRMKT-TSSIDLSSCVIHQKLQMLAICIERKKSLNRKKDTDDAHKEKTSNSMAPDKIRKGSAGVVPSMMLINT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAVGLSGQLERDILSSDMSAFKAANPDAAFEDFIRWHSPGDWV 176
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A1D6PCP6_MAIZE (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6PCP6_MAIZE) HSP 1 Score: 96.7 bits (239), Expect = 1.400e-20 Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCI----LLRREEQRSPSD--SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + + T +ID+ +CL+ QKLQ+L CI L RE+ D S+ A G+ G + LL+T F ++ P TQ PL+TEDM EE+ H A L+ R L +D++AFKAANP DF+RW+SP +WL
Sbjct: 84 WCWEESERLPRMKS-TSSIDLSSCLIHQKLQMLTICIERKRSLNREKGTGYKDETSNSTAVNKSRKGSAGVVPKMMLLNT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAIGLSGQLERDILCSDMSAFKAANPDAVFEDFIRWHSPGEWL 236
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A835LCI2_9MAGN (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LCI2_9MAGN) HSP 1 Score: 96.7 bits (239), Expect = 1.650e-20 Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 7 WEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDS--SPVAECGG-------HPGALGAL-----EGKFLLHTG---PEGNFL------PLYVPETQQTPLVTEDMLEEQQHLALATARHR---KQLAADVAAFKAANPGCCMADFVRWYSPSDW 432
W +P+PHV D+ TCLL Q+LQ++ C + R+ + SDS S + E G PG+ AL G +L G P GN P+Y P TQ+ P++TED+++E + L T QL +D+ AFKAANPGC + DFVRW+SP DW
Sbjct: 271 WSDGQPVPHVPLDESP-DLNTCLLHQQLQVI-NCCISRKTRRSMASDSLQSIMREAGPCTEAAVVSPGSSSALYARVSTGDLVLRLGAHQPSGNLTMLETGEPVYTPVTQEGPILTEDLIKEAEEFVLRTGSCGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDW 436
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A453IAJ1_AEGTS (Rab3 GTPase-activating protein catalytic subunit n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453IAJ1_AEGTS) HSP 1 Score: 95.5 bits (236), Expect = 3.770e-20 Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRR--------EEQRSPSDSSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + T +ID+ +C++ QKLQ+LA CI ++ ++ S+ +A G+ G + L++T F ++ P TQ PL+TEDM EE+ H A L+ R L++D++AFKAANP DF+RW+SP DW+
Sbjct: 107 WCWEESERLPRMKT-TSSIDLSSCVIHQKLQMLAICIERKKSLNRKKDTDDAHKEKTSNSMAPDKIRKGSAGVVPSMMLINT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAVGLSGQLERDILSSDMSAFKAANPDAAFEDFIRWHSPGDWV 261
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: A0A0E0CZ67_9ORYZ (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0CZ67_9ORYZ) HSP 1 Score: 95.5 bits (236), Expect = 4.310e-20 Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + + T +ID+ TCL+ QKL +LA CI ++ R S+ VA+ G+ G + LL+T F ++ P TQ L+TEDM EE+ H A L+ R L++D++AFKAANP DF+RW+SP DW+
Sbjct: 398 WCWEESERLPRMKS-TSSIDLCTCLIHQKLHMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNT-----FQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 552
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: J3LMU7_ORYBR (Rab3 GTPase-activating protein catalytic subunit n=11 Tax=Oryza TaxID=4527 RepID=J3LMU7_ORYBR) HSP 1 Score: 95.5 bits (236), Expect = 4.350e-20 Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + T ID+ TCL+ QKL +LA CI ++ R S S+ A+ G+ G + LL+T F ++VP TQ L+TEDM EE+ H A L+ R L++D++AFKAANP DF+RW+SP DW+
Sbjct: 459 WCWEESERLPRMKT-TSKIDLSTCLIHQKLHMLAICIERKKSLSREKSTDHAHEDGISNNEAQNKTRKGSAGVVPSMMLLNT-----FQEMHVPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 613
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: Q10MT9_ORYSJ (Rab3 GTPase-activating protein catalytic subunit n=5 Tax=Oryza TaxID=4527 RepID=Q10MT9_ORYSJ) HSP 1 Score: 95.5 bits (236), Expect = 4.350e-20 Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSD--------SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + + T +ID+ TCL+ QKL +LA CI ++ R S+ VA+ G+ G + LL+T F ++ P TQ L+TEDM EE+ H A L+ R L++D++AFKAANP DF+RW+SP DW+
Sbjct: 464 WCWEESERLPRMKS-TSSIDLCTCLIHQKLHMLAICIERKKSLSREKGTDHAHEDGISNSVAQNKTRKGSAGVVPSMMLLNT-----FQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVGLSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWV 618
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Match: C5WNH2_SORBI (Rab3 GTPase-activating protein catalytic subunit n=30 Tax=Panicoideae TaxID=147369 RepID=C5WNH2_SORBI) HSP 1 Score: 95.1 bits (235), Expect = 5.920e-20 Identity = 60/159 (37.74%), Postives = 85/159 (53.46%), Query Frame = 1
Query: 1 WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCI----LLRREEQRSPSD--SSPVAECGGHPGALGALEGKFLLHTGPEGNFLPLYVPETQQTPLVTEDMLEEQQHLA--------LATARHRKQLAADVAAFKAANPGCCMADFVRWYSPSDWL 435
W WE++ LP + + T +ID+ +CL+ QKLQ+L CI L E+ D S+ A G+ G + LL+T F ++ P TQ PL+TEDM EE+ H A L+ R L +D++AFKAANP DF+RW+SP DW+
Sbjct: 457 WCWEESERLPRMKS-TSSIDLSSCLIHQKLQMLTICIERKKSLNHEKGAGYKDETSNSTAVDKSRKGSAGVVPKMMLLNT-----FQEMHAPYTQDAPLMTEDMHEERLHAAEAFGNAIGLSGQLERDILCSDMSAFKAANPDAVFEDFIRWHSPGDWV 609 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123145.4751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123145.4751.1 >prot_M-pyrifera_M_contig123145.4751.1 ID=prot_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp WHWEQARPLPHVAAATGAIDMRTCLLDQKLQLLARCILLRREEQRSPSDSback to top mRNA from alignment at M-pyrifera_M_contig123145:90..524- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123145.4751.1 ID=mRNA_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig123145:90..524- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123145:90..524- >mRNA_M-pyrifera_M_contig123145.4751.1 ID=mRNA_M-pyrifera_M_contig123145.4751.1|Name=mRNA_M-pyrifera_M_contig123145.4751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig123145:90..524- (Macrocystis pyrifera P11B4 male)back to top |