mRNA_M-pyrifera_M_contig123137.4746.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A662XX57_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XX57_9STRA) HSP 1 Score: 100 bits (249), Expect = 9.720e-22 Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 1
Query: 1 MGCCGNRKVA----DMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYDYDNE 441
MGCC + V D + + A RKC DVL +VLF ++W+GM+ + +G IKGEP+ L++ DYNG CG ++ A +YPR+N+DLL+ A A ++ D++ GVC+ +CP G +C Y+ + E
Sbjct: 668 MGCCSKKPVGVDGGDGNGSKTHGVA--PASTRKCRDVLCVVLFAVFWVGMVAIAVVGFIKGEPKRLLYGTDYNGTTCGTGRHENAP-----------LTFYPRINQDLLEQATNPALTSPADLS---FYGVCVASCPEAGTYLCNYEAEAE 802
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: H3GJB7_PHYRM (Choline transporter-like protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJB7_PHYRM) HSP 1 Score: 99.4 bits (246), Expect = 2.360e-21 Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query: 1 MGCCGNRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYDYDNE 441
MGCC N++ + +E + A RKC DVL ++ F ++W+GM+ + A+G + GEP+ L++ DYNG CG + + +YPR+ +DLL+ A + S+ GVC+ +CP G +C Y+ +NE
Sbjct: 1 MGCCSNKQQVGVK-DEAASQGVAPASSRKCRDVLCVLFFAVFWVGMIAIAAVGFMHGEPKRLLYGSDYNGSTCG-----------TGEQEEYPLTFYPRITQDLLEQA----SNPSLSPEDFSFYGVCVESCPDAGSYICNYEAENE 131
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A662WJU6_9STRA (Choline transporter-like protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJU6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 8.160e-21 Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 1
Query: 1 MGCCGNRKVA----DMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYDYDNENGT 450
MGCC + V D + + A RKC DVL +VLF ++W+GM+ + +G + GEP+ L++ DYNG CG K+ A +YPR+N+DLL+ A +++ D++ GVC+ +CP G C Y+ + E T
Sbjct: 1 MGCCSKKPVGVDGGDGNGSKTHGVA--PASTRKCRDVLCVVLFAVFWVGMVAIAIVGFVNGEPKRLLYGTDYNGTTCGTGKHESAP-----------LTFYPRINQDLLEQATNPTLTSASDLS---FYGVCVASCPEEGTYFCNYEAEAEIAT 138
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A2D4BXT6_PYTIN (Choline transporter-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT6_PYTIN) HSP 1 Score: 96.7 bits (239), Expect = 2.070e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 7 CCGNRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYD 429
CC + D+ A+ V RKC DV +LFI+YW+GM+ V AIG G+P +L++ RDYNG CG GA ++ +PRL+ED+L A + V +TK+P GVC+ +CP GD VC YD
Sbjct: 4 CCRKVEHEDV-ADAGHRSGLVPGSKRKCRDVFCCLLFIVYWLGMIVVAAIGLRAGKPLSLVYGRDYNGSTCG----TGAM-------AERPLTAFPRLDEDML-----VALTHRVPLTKMPFFGVCVASCPRTGDTVCTYD 127
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A6G0WDH7_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDH7_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 7.110e-20 Identity = 52/142 (36.62%), Postives = 79/142 (55.63%), Query Frame = 1
Query: 1 MGCCGNRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLY 426
MGCC +++ D+ + + V K RKC DVL V+FI++W+GM+ + +G G P++L++ D+NG VCG GA +DS KY++YPR+NED+ A Q S+ G+C+ CP GD +C Y
Sbjct: 1 MGCCSSKE--DVVPDGSGGV--VPTKTRKCRDVLCCVIFIVFWLGMVVLAIVGVANGTPQSLLYGTDFNGTVCGN----GAV----ADS---KYIFYPRMNEDMQVQAAKGIQPLSMK-----FYGLCVNKCPEMGDYICTY 122
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: K3WN71_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN71_GLOUD) HSP 1 Score: 94.7 bits (234), Expect = 9.810e-20 Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 1
Query: 7 CCGNRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLT----GVCLPTCPTRGDVV 417
CC K +D A+ + RKCTD+LF +LFIL+W+GM+ + A+G GEP+ LI+ D+ G CG K + D + KY+ YPRL EDLL + + +S+ +T GVC+P CP D +
Sbjct: 5 CC---KRSDANADTAAGANPFKPDNRKCTDILFFLLFILFWVGMIIIAAVGYQNGEPKRLIYGTDWMGRTCG-VKADASGSIPAYDLTDYKYLIYPRLGEDLLALELQSGGVSSISLTDTSALKKFYGVCVPKCPMTNDSI 141
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A5D6Y150_9STRA (Choline transporter-like protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y150_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.140e-18 Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 1
Query: 1 MGCCGNR--KVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYDYDNENG 447
MGCC + +VA + R+ A RKC D +LF+++W+GML V A+G + G+P+ L++ DYNG CG GA + + +YPR++EDLL+ A + S+ D + GVC+ CP C Y+ + + G
Sbjct: 1 MGCCSKKPVEVAGENYDARKTGV-APASNRKCRDCFCCLLFLVFWVGMLVVAAVGLVSGQPKRLLYGSDYNGTTCG----TGAMESK-------PLTFYPRMSEDLLEQATASPGSSPTDFS---FYGVCVTECPLEYSYFCNYELEAKIG 136
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: F0WBJ1_9STRA (Choline transporterlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBJ1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.480e-18 Identity = 47/142 (33.10%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 16 NRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTR-GDVVCLYDYDN 438
+++ +D E + ++ + RKCTD FL LF+L+WIGM+ + AIG KG P+ L++ D+ G CG + + D + KY+ YPRL++DL A + ++ L GVC+ +CP R G ++ Y+N
Sbjct: 8 SKETSDTDIENGNDTNPLRVRKRKCTDTFFLFLFLLFWIGMIIIAAIGYKKGNPKRLMYGSDWLGRTCGTSQPETSTHIPPYDFTNYKYLMYPRLSKDL-------AMQSPTSLSLRKLYGVCVRSCPVRNGSTQYVHAYNN 142
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A662Y0E4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0E4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.490e-18 Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 79 GRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGD--KNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASV--DVTKIPLTGVCLPTCPTRGD 411
RKCTD+L LV F+ +W+GM+ + A+G G+P+ LI+ D+ G CGG K Y D +Y+ YPRL+EDL A G A +A + T L GVC+P+CP D
Sbjct: 38 NRKCTDLLCLVFFLAFWLGMIVIAAVGYTSGQPQRLIYGTDWMGRTCGGHAAKTSAVPAYDLRDY---RYIIYPRLSEDLEALAAGGATAAELASPSTLRKLFGVCVPSCPLLND 149
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Match: A0A6A3YJ19_9STRA (Choline transporter-like protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YJ19_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.010e-17 Identity = 48/148 (32.43%), Postives = 74/148 (50.00%), Query Frame = 1
Query: 1 MGCCGNRK---VADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMAIGAIKGEPEALIFARDYNGDVCGGDKNPGAAKYQCSDSSKCKYVYYPRLNEDLLDAAVGAAQSASVDVTKIPLTGVCLPTCPTRGDVVCLYDYD 435
MGCC N + V D A + A RKC DVL ++LF ++W+GM+ + +G + GEP+ L+F DYNG CG K+ +YPR+ +DL++ A + S+ GVC+ +CP G +C Y+ +
Sbjct: 1 MGCCSNTEQVGVKDGVALQGV----APANSRKCRDVLCVLLFAVFWVGMVAIAIVGFMHGEPKRLLFGSDYNGTTCGTGKHDNQP-----------LTFYPRITQDLVEQA----SNPSLSPKDFSFYGVCVASCPDAGTYICNYEAE 129 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123137.4746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123137.4746.1 >prot_M-pyrifera_M_contig123137.4746.1 ID=prot_M-pyrifera_M_contig123137.4746.1|Name=mRNA_M-pyrifera_M_contig123137.4746.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp MGCCGNRKVADMTAEERENMCRVQAKGRKCTDVLFLVLFILYWIGMLYVMback to top mRNA from alignment at M-pyrifera_M_contig123137:10..522+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123137.4746.1 ID=mRNA_M-pyrifera_M_contig123137.4746.1|Name=mRNA_M-pyrifera_M_contig123137.4746.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig123137:10..522+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123137:10..522+ >mRNA_M-pyrifera_M_contig123137.4746.1 ID=mRNA_M-pyrifera_M_contig123137.4746.1|Name=mRNA_M-pyrifera_M_contig123137.4746.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig123137:10..522+ (Macrocystis pyrifera P11B4 male)back to top |