mRNA_M-pyrifera_M_contig123136.4745.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A564YS67_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YS67_HYMDI) HSP 1 Score: 73.2 bits (178), Expect = 6.510e-13 Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPS-LPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLI 342
V E+++++ F PFGP+K ++M D T + +GF F++F PE A A + ++G FAGR L++G PS LP D P + R+++G V ++T D+ + + FGNV C+LI
Sbjct: 97 VKEDIIKQAFIPFGPVKNVSMSWDPATLKHKGFAFVEFEYPEAALLAIEQMNGTNFAGRLLKVGRPSNLP-----DATPFMNELIEEFKLQKRIYVGGVHSELTDSDIECVFQAFGNVTMCRLI 215
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0R3SCT2_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SCT2_HYMDI) HSP 1 Score: 73.2 bits (178), Expect = 1.190e-12 Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPS-LPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLI 342
V E+++++ F PFGP+K ++M D T + +GF F++F PE A A + ++G FAGR L++G PS LP D P + R+++G V ++T D+ + + FGNV C+LI
Sbjct: 97 VKEDIIKQAFIPFGPVKNVSMSWDPATLKHKGFAFVEFEYPEAALLAIEQMNGTNFAGRLLKVGRPSNLP-----DATPFMNELIEEFKLQKRIYVGGVHSELTDSDIECVFQAFGNVTMCRLI 215
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0G4G707_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G707_9ALVE) HSP 1 Score: 73.2 bits (178), Expect = 1.200e-12 Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGH---------SDGPPSVPG------------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLIVS 348
+TE +R+VF FG + IN+ + G +GFCFI++ PE A A QA+ G R +++G P+ GG + GP + G +R+++GSV Y+ +A+D+ ++ + FG + SCQLI S
Sbjct: 1 LTESDIRQVFQAFGTI--INVEMPKEGGRSKGFCFIEYTVPEAAEMAIQAMQGFQLKNRTIKVGRPTAVTGGXXXXXSIPTPASGPLTATGLPNSGASSGGGMNRIYVGSVPYNFSANDIKEIFQAFGQILSCQLIPS 136
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0S7KJ66_9TELE (PU60B n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KJ66_9TELE) HSP 1 Score: 70.9 bits (172), Expect = 1.330e-12 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
E+ +R+ FAPFGP+K I+M D+ T + +GF F+++ PE A A + ++ M GR +++G P GG P + +R+++ SV D++ DD+ + + FG + SC L
Sbjct: 43 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 158
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A183DV35_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DV35_9BILA) HSP 1 Score: 72.4 bits (176), Expect = 2.230e-12 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQ-ALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVP-----------GSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
V EEM++ FA FGP+K INM D TG +GF F+++ PE A AQ +++G + GR L++G PS + P + P R+++ SV D++ D+ + + FG V CQL
Sbjct: 92 VREEMIKNAFAVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQESMNGVLMGGRNLKVGRPS-------NMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQL 209
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A7J8C3T5_ROUAE (Poly(U)-binding-splicing factor PUF60 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8C3T5_ROUAE) HSP 1 Score: 71.6 bits (174), Expect = 4.140e-12 Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPGSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
E+ +R+ FAPFGP+K I+M D+ T + +GF F+++ PE A A + ++ M GR +++ P L + +R+++ SV D++ DD+ + + FG + SC L
Sbjct: 140 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRPDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 244
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A8G229_9TELE (Poly-U binding splicing factor 60KDa n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8G229_9TELE) HSP 1 Score: 70.9 bits (172), Expect = 4.220e-12 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
E+ +R+ FAPFGP+K I+M D+ T + +GF F+++ PE A A + ++ M GR +++G P GG P + +R+++ SV D++ DD+ + + FG + SC L
Sbjct: 82 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 197
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: U6DW71_NEOVI (Poly-U-binding-splicing factor 60KDa (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DW71_NEOVI) HSP 1 Score: 69.3 bits (168), Expect = 5.560e-12 Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
E+ +R+ FAPFGP+K I+M D+ T + +GF F+++ PE A A + ++ M GR +++G PS P + +R+++ SV D++ DD+ + + FG + SC L
Sbjct: 26 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 141
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A183I5X0_9BILA (Uncharacterized protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183I5X0_9BILA) HSP 1 Score: 70.9 bits (172), Expect = 6.180e-12 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query: 1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQ-ALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVP-----------GSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
V EEM++ F FGP+K INM D TG +GF F+++ PE A AQ +++G + GR L++G PS + P + P R+++ SV D++ D+ + + FG V CQL
Sbjct: 21 VREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQESMNGVLMGGRNLKVGRPS-------NMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQL 138
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A7ZDR9_NOTFU (Poly-U binding splicing factor 60KDa n=17 Tax=Percomorphaceae TaxID=1489872 RepID=A0A1A7ZDR9_NOTFU) HSP 1 Score: 70.9 bits (172), Expect = 7.400e-12 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
E+ +R+ FAPFGP+K I+M D+ T + +GF F+++ PE A A + ++ M GR +++G P GG P + +R+++ SV D++ DD+ + + FG + SC L
Sbjct: 40 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 155 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123136.4745.1 >prot_M-pyrifera_M_contig123136.4745.1 ID=prot_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp MVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQALDGQMback to top mRNA from alignment at M-pyrifera_M_contig123136:68..433+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123136.4745.1 ID=mRNA_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig123136:68..433+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123136:68..433+ >mRNA_M-pyrifera_M_contig123136.4745.1 ID=mRNA_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig123136:68..433+ (Macrocystis pyrifera P11B4 male)back to top |