prot_M-pyrifera_M_contig123136.4745.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig123136.4745.1
Unique Name	prot_M-pyrifera_M_contig123136.4745.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	118

Homology

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0S7KJ66_9TELE (PU60B n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KJ66_9TELE)

HSP 1 Score: 68.9 bits (167), Expect = 6.310e-12
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   46 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 158

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0G4G707_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G707_9ALVE)

HSP 1 Score: 70.1 bits (170), Expect = 1.250e-11
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGH---------SDGPPSVPG------------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLIVS 112
            +R+VF  FG +  IN+    + G  +GFCFI++  PE A  A QA+ G     R +++G P+   GG          + GP +  G            +R+++GSV Y+ +A+D+ ++ + FG + SCQLI S
Sbjct:    6 IRQVFQAFGTI--INVEMPKEGGRSKGFCFIEYTVPEAAEMAIQAMQGFQLKNRTIKVGRPTAVTGGXXXXXSIPTPASGPLTATGLPNSGASSGGGMNRIYVGSVPYNFSANDIKEIFQAFGQILSCQLIPS 136

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A7J8C3T5_ROUAE (Poly(U)-binding-splicing factor PUF60 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8C3T5_ROUAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.710e-11
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPGSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++ P  L     +        +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:  143 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRPDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 244

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A8G229_9TELE (Poly-U binding splicing factor 60KDa n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8G229_9TELE)

HSP 1 Score: 68.9 bits (167), Expect = 1.880e-11
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   85 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 197

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: U6DW71_NEOVI (Poly-U-binding-splicing factor 60KDa (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DW71_NEOVI)

HSP 1 Score: 67.4 bits (163), Expect = 2.620e-11
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G PS          P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   29 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 141

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A7ZDR9_NOTFU (Poly-U binding splicing factor 60KDa n=17 Tax=Percomorphaceae TaxID=1489872 RepID=A0A1A7ZDR9_NOTFU)

HSP 1 Score: 68.9 bits (167), Expect = 3.070e-11
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   43 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 155

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: Q0VDY2_MOUSE (Poly(U)-binding-splicing factor PUF60 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=Q0VDY2_MOUSE)

HSP 1 Score: 67.4 bits (163), Expect = 4.100e-11
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G PS          P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   59 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 171

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A8BMZ2_9TELE (Poly-U binding splicing factor 60KDa (Fragment) n=4 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8BMZ2_9TELE)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-11
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G PS    G     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   43 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRPS----GIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 155

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A226EPM7_FOLCA (Poly(U)-binding-splicing factor half pint n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EPM7_FOLCA)

HSP 1 Score: 68.6 bits (166), Expect = 4.400e-11
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDG------PPSVPGSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K INM  D    + +GF F+++  PE A  A + ++G M  GR ++ G  +  +  H D         +    R++I S+  D+T DD+  + + FG + SC+L
Sbjct:  139 IRQAFAPFGPIKTINMSWDPVAQKHKGFAFVEYDLPEAAQLALEQMNGVMIGGRNIKCGRDTRIKFSHMDQVIDEVMDEAREYHRIYIASIHQDLTEDDIKSVFEAFGKIKSCKL 253

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BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: UPI000B90859E (poly(U)-binding-splicing factor PUF60-like n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=UPI000B90859E)

HSP 1 Score: 66.2 bits (160), Expect = 5.390e-11
Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 0

Query:    2 VREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 109
            +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  +  GR +++G PS          P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   18 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQMNSVVLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCML 130

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0S7KJ66_9TELE	6.310e-12	32.48	PU60B n=2 Tax=Poeciliopsis prolifica TaxID=188132 ...	[more]
A0A0G4G707_9ALVE	1.250e-11	32.33	Uncharacterized protein (Fragment) n=1 Tax=Chromer...	[more]
A0A7J8C3T5_ROUAE	1.710e-11	32.11	Poly(U)-binding-splicing factor PUF60 n=1 Tax=Rous...	[more]
A0A1A8G229_9TELE	1.880e-11	32.48	Poly-U binding splicing factor 60KDa n=2 Tax=Notho...	[more]
U6DW71_NEOVI	2.620e-11	31.62	Poly-U-binding-splicing factor 60KDa (Fragment) n=...	[more]
A0A1A7ZDR9_NOTFU	3.070e-11	32.48	Poly-U binding splicing factor 60KDa n=17 Tax=Perc...	[more]
Q0VDY2_MOUSE	4.100e-11	31.62	Poly(U)-binding-splicing factor PUF60 (Fragment) n...	[more]
A0A1A8BMZ2_9TELE	4.190e-11	32.48	Poly-U binding splicing factor 60KDa (Fragment) n=...	[more]
A0A226EPM7_FOLCA	4.400e-11	33.04	Poly(U)-binding-splicing factor half pint n=1 Tax=...	[more]
UPI000B90859E	5.390e-11	30.77	poly(U)-binding-splicing factor PUF60-like n=1 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 1..59 e-value: 8.9E-5 score: 31.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..57 e-value: 5.3E-14 score: 51.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..58 score: 12.799
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..73 e-value: 3.0E-10 score: 42.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..32 e-value: 1.7E-7 score: 33.5 coord: 74..111 e-value: 3.0E-10 score: 42.2
None	No IPR available	PANTHER	PTHR47330	FAMILY NOT NAMED	coord: 1..118
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig123136	contig	M-pyrifera_M_contig123136:80..433 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig123136.4745.1	mRNA_M-pyrifera_M_contig123136.4745.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig123136 68..433 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig123136.4745.1 ID=prot_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQALDGQM
FAGRPLRIGPPSLPRGGHSDGPPSVPGSRMFIGSVSYDMTADDVGDLCKL
FGNVHSCQLIVSLLHTHH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf