mRNA_M-pyrifera_M_contig123136.4745.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123136.4745.1
Unique NamemRNA_M-pyrifera_M_contig123136.4745.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A564YS67_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YS67_HYMDI)

HSP 1 Score: 73.2 bits (178), Expect = 6.510e-13
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPS-LPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLI 342
            V E+++++ F PFGP+K ++M  D  T + +GF F++F  PE A  A + ++G  FAGR L++G PS LP     D  P +           R+++G V  ++T  D+  + + FGNV  C+LI
Sbjct:   97 VKEDIIKQAFIPFGPVKNVSMSWDPATLKHKGFAFVEFEYPEAALLAIEQMNGTNFAGRLLKVGRPSNLP-----DATPFMNELIEEFKLQKRIYVGGVHSELTDSDIECVFQAFGNVTMCRLI 215          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0R3SCT2_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SCT2_HYMDI)

HSP 1 Score: 73.2 bits (178), Expect = 1.190e-12
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPS-LPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLI 342
            V E+++++ F PFGP+K ++M  D  T + +GF F++F  PE A  A + ++G  FAGR L++G PS LP     D  P +           R+++G V  ++T  D+  + + FGNV  C+LI
Sbjct:   97 VKEDIIKQAFIPFGPVKNVSMSWDPATLKHKGFAFVEFEYPEAALLAIEQMNGTNFAGRLLKVGRPSNLP-----DATPFMNELIEEFKLQKRIYVGGVHSELTDSDIECVFQAFGNVTMCRLI 215          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0G4G707_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G707_9ALVE)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-12
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGH---------SDGPPSVPG------------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQLIVS 348
            +TE  +R+VF  FG +  IN+    + G  +GFCFI++  PE A  A QA+ G     R +++G P+   GG          + GP +  G            +R+++GSV Y+ +A+D+ ++ + FG + SCQLI S
Sbjct:    1 LTESDIRQVFQAFGTI--INVEMPKEGGRSKGFCFIEYTVPEAAEMAIQAMQGFQLKNRTIKVGRPTAVTGGXXXXXSIPTPASGPLTATGLPNSGASSGGGMNRIYVGSVPYNFSANDIKEIFQAFGQILSCQLIPS 136          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A0S7KJ66_9TELE (PU60B n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KJ66_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 1.330e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            E+ +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   43 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 158          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A183DV35_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DV35_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 2.230e-12
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQ-ALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVP-----------GSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            V EEM++  FA FGP+K INM  D  TG  +GF F+++  PE A  AQ +++G +  GR L++G PS       + P + P             R+++ SV  D++  D+  + + FG V  CQL
Sbjct:   92 VREEMIKNAFAVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQESMNGVLMGGRNLKVGRPS-------NMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQL 209          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A7J8C3T5_ROUAE (Poly(U)-binding-splicing factor PUF60 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8C3T5_ROUAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.140e-12
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPGSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            E+ +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++ P  L     +        +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:  140 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRPDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 244          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A8G229_9TELE (Poly-U binding splicing factor 60KDa n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8G229_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 4.220e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            E+ +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   82 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 197          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: U6DW71_NEOVI (Poly-U-binding-splicing factor 60KDa (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DW71_NEOVI)

HSP 1 Score: 69.3 bits (168), Expect = 5.560e-12
Identity = 38/120 (31.67%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            E+ +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G PS          P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   26 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTL 141          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A183I5X0_9BILA (Uncharacterized protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183I5X0_9BILA)

HSP 1 Score: 70.9 bits (172), Expect = 6.180e-12
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    1 VTEEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQ-ALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVP-----------GSRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            V EEM++  F  FGP+K INM  D  TG  +GF F+++  PE A  AQ +++G +  GR L++G PS       + P + P             R+++ SV  D++  D+  + + FG V  CQL
Sbjct:   21 VREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQESMNGVLMGGRNLKVGRPS-------NMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQL 138          
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Match: A0A1A7ZDR9_NOTFU (Poly-U binding splicing factor 60KDa n=17 Tax=Percomorphaceae TaxID=1489872 RepID=A0A1A7ZDR9_NOTFU)

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-12
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 EEMVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAA-QALDGQMFAGRPLRIGPPSLPRGGHSDGPPSVPG--------SRMFIGSVSYDMTADDVGDLCKLFGNVHSCQL 339
            E+ +R+ FAPFGP+K I+M  D+ T + +GF F+++  PE A  A + ++  M  GR +++G P    GG     P +          +R+++ SV  D++ DD+  + + FG + SC L
Sbjct:   40 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRP----GGIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123136.4745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A564YS67_HYMDI6.510e-1335.48Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]
A0A0R3SCT2_HYMDI1.190e-1235.48Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]
A0A0G4G707_9ALVE1.200e-1232.61Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A0S7KJ66_9TELE1.330e-1232.50PU60B n=2 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A183DV35_9BILA2.230e-1235.20Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A7J8C3T5_ROUAE4.140e-1232.14Poly(U)-binding-splicing factor PUF60 n=1 Tax=Rous... [more]
A0A1A8G229_9TELE4.220e-1232.50Poly-U binding splicing factor 60KDa n=2 Tax=Notho... [more]
U6DW71_NEOVI5.560e-1231.67Poly-U-binding-splicing factor 60KDa (Fragment) n=... [more]
A0A183I5X0_9BILA6.180e-1234.40Uncharacterized protein n=1 Tax=Onchocerca flexuos... [more]
A0A1A7ZDR9_NOTFU7.400e-1232.50Poly-U binding splicing factor 60KDa n=17 Tax=Perc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123136contigM-pyrifera_M_contig123136:68..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.2
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog109871.XP_006678136.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA recognition motif
EggNOG OGs38DDH@33154,3NYS1@4751,KOG0124@1,KOG0124@2759
COG Functional cat.A
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.0390031-UTR-M-pyrifera_M_contig123136:67..791622815750.0390031-UTR-M-pyrifera_M_contig123136:67..79Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123136 68..79 +
1692277551.7270582-UTR-M-pyrifera_M_contig123136:67..791692277551.7270582-UTR-M-pyrifera_M_contig123136:67..79Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123136 68..79 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.055385-CDS-M-pyrifera_M_contig123136:79..4331622815750.055385-CDS-M-pyrifera_M_contig123136:79..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123136 80..433 +
1692277551.7404644-CDS-M-pyrifera_M_contig123136:79..4331692277551.7404644-CDS-M-pyrifera_M_contig123136:79..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123136 80..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123136.4745.1prot_M-pyrifera_M_contig123136.4745.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123136 80..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123136.4745.1

>prot_M-pyrifera_M_contig123136.4745.1 ID=prot_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MVREVFAPFGPLKGINMVPDNQTGEFRGFCFIDFLQPEQAAAAQALDGQM
FAGRPLRIGPPSLPRGGHSDGPPSVPGSRMFIGSVSYDMTADDVGDLCKL
FGNVHSCQLIVSLLHTHH
back to top

mRNA from alignment at M-pyrifera_M_contig123136:68..433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123136.4745.1 ID=mRNA_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig123136:68..433+ (Macrocystis pyrifera P11B4 male)
GTGACAGAAGAGATGGTGAGGGAAGTGTTCGCCCCCTTTGGACCGCTGAA GGGAATCAACATGGTGCCTGACAACCAGACTGGAGAGTTCCGTGGCTTCT GCTTCATCGATTTCTTGCAGCCGGAGCAGGCGGCCGCAGCCCAGGCGCTG GACGGCCAAATGTTTGCTGGAAGGCCCCTGCGCATTGGCCCTCCCTCGCT GCCTCGCGGAGGCCACAGCGATGGCCCTCCCTCTGTGCCAGGCAGCCGCA TGTTCATCGGCTCCGTGTCTTATGATATGACAGCAGATGATGTTGGAGAC CTCTGCAAGCTCTTCGGCAACGTTCATTCGTGCCAGTTGATCGTGAGTCT CTTACACACACACCAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123136:68..433+

>mRNA_M-pyrifera_M_contig123136.4745.1 ID=mRNA_M-pyrifera_M_contig123136.4745.1|Name=mRNA_M-pyrifera_M_contig123136.4745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig123136:68..433+ (Macrocystis pyrifera P11B4 male)
ATGGTGAGGGAAGTGTTCGCCCCCTTTGGACCGCTGAAGGGAATCAACAT
GGTGCCTGACAACCAGACTGGAGAGTTCCGTGGCTTCTGCTTCATCGATT
TCTTGCAGCCGGAGCAGGCGGCCGCAGCCCAGGCGCTGGACGGCCAAATG
TTTGCTGGAAGGCCCCTGCGCATTGGCCCTCCCTCGCTGCCTCGCGGAGG
CCACAGCGATGGCCCTCCCTCTGTGCCAGGCAGCCGCATGTTCATCGGCT
CCGTGTCTTATGATATGACAGCAGATGATGTTGGAGACCTCTGCAAGCTC
TTCGGCAACGTTCATTCGTGCCAGTTGATCGTGAGTCTCTTACACACACA
CCACATGGTGAGGGAAGTGTTCGCCCCCTTTGGACCGCTGAAGGGAATCA
ACATGGTGCCTGACAACCAGACTGGAGAGTTCCGTGGCTTCTGCTTCATC
GATTTCTTGCAGCCGGAGCAGGCGGCCGCAGCCCAGGCGCTGGACGGCCA
AATGTTTGCTGGAAGGCCCCTGCGCATTGGCCCTCCCTCGCTGCCTCGCG
GAGGCCACAGCGATGGCCCTCCCTCTGTGCCAGGCAGCCGCATGTTCATC
GGCTCCGTGTCTTATGATATGACAGCAGATGATGTTGGAGACCTCTGCAA
GCTCTTCGGCAACGTTCATTCGTGCCAGTTGATCGTGAGTCTCTTACACA
CACACCAC
back to top