mRNA_M-pyrifera_M_contig123041.4737.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123041.4737.1
Unique NamemRNA_M-pyrifera_M_contig123041.4737.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A8J2T226_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T226_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.990e-17
Identity = 49/141 (34.75%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGS-GVSG-----IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            E N+  +  +DKE RK   + ++++SDPK+RAEQ+ Y+RE+EA+ + P+  +++ P A F ++ + + G   F NV  + +V++P S  V+G     +P +  PPR E + K+     FD  FHP  +  A S R +  LL
Sbjct:   49 EQNKFTKAFQDKEFRKMMAEYVDEISDPKHRAEQDAYIREMEAKGETPKDKRVIHPSAGFVVKTKKEDGAKLFINVVSSVEVEQPTSTNVNGGQQWQLPHLLGPPRMERDKKDNSVGAFDCCFHPLALQHAESARPFRDLL 189          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: F0YEB3_AURAN (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEB3_AURAN)

HSP 1 Score: 80.1 bits (196), Expect = 8.990e-15
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1
Query:   31 DKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLES-----DAGLACFANVGYTDKVDKP------GSGVSGIPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLLA 408
            D E RK   + ++++SDPKYR EQ QY+RE+EA+ + P+G  L+ P A F ++          G   F N+  ++K+ +P      G     +P +  PPR E + K+    TFD  FHP  +  A + + +  LLA
Sbjct: 1316 DPEFRKMMAEYVDEISDPKYREEQNQYIREMEAKGETPKGKALIHPKAGFVVKTRKMGKADHTGAKVFINIVSSEKLQEPEATPCDGGSRWALPHLLGPPRMERDKKDATVSTFDCCFHPAAVQRANASKPFRDLLA 1452          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A6U1AP86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AP86_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.790e-13
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   64 MEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESD-----AGLACFANVGYTDKVDKPGS-----GVS-GIPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            M+++SDPK+RAEQE Y+ +LE   Q+PEG +LV+P AAF ++  ++      G   F NV  +DK+ +P +     GVS  +P+   P R E +       TFD  FHP+ +  A+  + +  L+
Sbjct:   65 MDEISDPKHRAEQEAYITKLENEDQVPEGKELVRPSAAFVVKTHTEDADKAKGSKVFINVVQSDKIAEPKATPQKGGVSYSLPLSLGPKRMESDKGGATVPTFDACFHPKALQLAKRDKRFKDLV 189          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: H3GGQ4_PHYRM (Protein kintoun n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGQ4_PHYRM)

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-12
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGS-----GVSG----IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQL 402
            E ++ +  +KD E R    + M+++SDP+ RAE EQYL +LE   ++P   QLVKP   F ++ + +A    F NV  ++K+  P S     G  G    +P    P R E +       TFDV FHP VI  A S   Y  +
Sbjct:   38 EQHKFLSAMKDAEFRSLLNEYMQEISDPRNRAETEQYLAQLENEQKVPTDKQLVKPTPGFVIKTKWEASQKIFVNVCSSEKMQPPSSTKVTTGQQGSSWNLPYSLGPERLEPDKGGSSVPTFDVCFHPRVIEFAMSRGDYRHM 180          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A6A4G3X5_9STRA (Protein kintoun n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G3X5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.610e-12
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGSG--VSG----IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            E ++ +  +KD E R    + M+++SDP+ RAE EQYL +LE   ++P   QLVKP   F ++ + DA    F NV  +DK+  P S    SG    +P    P R E +       TFDV FHP VI  A +   Y  ++
Sbjct:   58 EQHKFLSAMKDPEFRSLLNEYMQEISDPRNRAETEQYLSQLENEHKVPTDKQLVKPTPGFVVKTKWDATHKVFVNVCSSDKMQPPSSTRVTSGQSWNLPYSLGPERLEPDKGGSGVPTFDVCFHPRVIEFAVAQTEYRHMV 198          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: D7FKK0_ECTSI (PIH1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.270e-12
Identity = 47/131 (35.88%), Postives = 66/131 (50.38%), Query Frame = 1
Query:   64 MEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLA------CFANVGYTDKVDKPGSGVSG---------IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLLAL 411
            ME+M DPK RAEQE Y+ ELE++ ++PEG ++V P   F ++     G         F NV  +DK+ KP S +S          +PV   P R E +     T TFDV +HPE +  A     +  L+ L
Sbjct:   50 MEEMQDPKQRAEQELYISELESQNRVPEGKEVVHPLPGFVIKTRFTRGSKDAEPEKLFTNVVTSDKLAKPYSKISNSRPGGEAWSLPVAVGPLRKEKDKGGGSTTTFDVCYHPEALVRADRLSAFRDLVVL 180          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A2P4XKG5_9STRA (Protein kintoun n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKG5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.510e-12
Identity = 48/144 (33.33%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGS-----GVSG----IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            E  + +  +KD E R    + M+++SDP+ RAE EQYL +LE   ++P   QLVKP   F ++ + ++    F NV  +DK+  P S     G  G    +P    P R E +       TFDV FHP V+  A +   Y  ++
Sbjct:   34 EQQKFLSAMKDPEFRSLLNEYMQEISDPRNRAETEQYLTQLENEQKVPTDKQLVKPKPGFVVKTKWESTQKVFVNVCSSDKMQPPSSTRVMTGQQGTSWNLPYSLGPERLESDKGGSGVPTFDVCFHPRVVEFAMARTDYRHMV 177          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: G4ZSA8_PHYSP (Protein kintoun n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZSA8_PHYSP)

HSP 1 Score: 71.6 bits (174), Expect = 7.520e-12
Identity = 51/144 (35.42%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGS-----GVSG----IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            E  + +  +KD E R      ME++SDP+ RAE EQYL +LE   ++P   QLVKP   F ++ + DA    F NV  +DK+  P S     G  G    +P      R E +       TFDV FHP VI  A +   Y  ++
Sbjct:   29 EQQKFLSAMKDPEFRSLLNDYMEEISDPRNRAETEQYLAQLENEQKVPADKQLVKPKPGFVVKTKWDAAQKLFVNVCSSDKMQPPSSTRVTSGQQGTSWNLPYSLGLERLEPDKGGSGVPTFDVCFHPRVIEFAMARADYRHMV 172          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A421G292_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G292_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.330e-11
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    1 ESNRIVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGS--------GVS-GIPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLL 405
            E ++ +  ++D E R      M+++SDP+ RAE EQYL +LE   ++P   QLVKP   F ++ + D     F NV  +DK+  P S        G S  +P    P R E +       TFDV FHP VI  A +   Y  ++
Sbjct:   25 EQHKFLSAMRDSEFRSLLNDYMQEISDPRNRAETEQYLSQLENEQKVPVDKQLVKPKPGFVVKTKWDGDQKIFLNVCSSDKLQPPSSTRVTTDKQGTSWNLPYSLGPERLEPDKGGSSVPTFDVCFHPRVIEFAVARTDYKDMV 168          
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Match: A0A7S3JX15_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JX15_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.420e-11
Identity = 38/141 (26.95%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   13 IVEMLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPDAAFALQLESDAGLACFANVGYTDKVDKPGSGVSG------IPVVTSPPRYELNAKEERTLTFDVVFHPEVIAGARSGRFYMQLLALVT 417
            I++  KD +  K F + ++++SDPK+R EQ +Y++++EA   +P   +L+ P + F ++    +G   F N+  +D+V++  S          +P +  P R E + K+    T+D  FHP  I  A+  + +  +++ +T
Sbjct:   48 ILKSAKDPKFHKMFAEYVDEISDPKHREEQNEYIKQMEAGGHLPPNKRLLYPKSGFVIKTHKASGEKLFVNMVQSDQVEEGKSNRQNGGTHFELPHILGPVRLERDKKDSTVSTYDCCFHPTTIERAKISKPFRDMISTIT 188          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123041.4737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2T226_9STRA7.990e-1734.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YEB3_AURAN8.990e-1533.584a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A6U1AP86_9STRA7.790e-1336.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
H3GGQ4_PHYRM1.600e-1234.97Protein kintoun n=1 Tax=Phytophthora ramorum TaxID... [more]
A0A6A4G3X5_9STRA1.610e-1236.17Protein kintoun n=6 Tax=Phytophthora TaxID=4783 Re... [more]
D7FKK0_ECTSI2.270e-1235.88PIH1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2P4XKG5_9STRA7.510e-1233.33Protein kintoun n=2 Tax=Phytophthora palmivora var... [more]
G4ZSA8_PHYSP7.520e-1235.42Protein kintoun n=1 Tax=Phytophthora sojae (strain... [more]
A0A421G292_9STRA1.330e-1134.03Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S3JX15_9STRA1.420e-1126.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123041contigM-pyrifera_M_contig123041:3..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue5e-13
Seed eggNOG ortholog44056.XP_009038702.1
KEGG rclassRC00026,RC00111,RC00202,RC00578
KEGG koko:K00288,ko:K19751
KEGG ReactionR00943,R01220,R01655
KEGG Pathwayko00670,ko01100,map00670,map01100
KEGG ModuleM00141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axonemal dynein complex assembly
EggNOG OGsCOG2759@1,KOG4230@2759,KOG4356@1,KOG4356@2759
EC1.5.1.5,3.5.4.9,6.3.4.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147,ko04812
Exons1
Model size417
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.6004717-UTR-M-pyrifera_M_contig123041:2..231622815749.6004717-UTR-M-pyrifera_M_contig123041:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123041 3..23 +
1692277551.5134003-UTR-M-pyrifera_M_contig123041:2..231692277551.5134003-UTR-M-pyrifera_M_contig123041:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123041 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.6113331-CDS-M-pyrifera_M_contig123041:23..4191622815749.6113331-CDS-M-pyrifera_M_contig123041:23..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123041 24..419 +
1692277551.523371-CDS-M-pyrifera_M_contig123041:23..4191692277551.523371-CDS-M-pyrifera_M_contig123041:23..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123041 24..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123041.4737.1prot_M-pyrifera_M_contig123041.4737.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123041 24..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123041.4737.1

>prot_M-pyrifera_M_contig123041.4737.1 ID=prot_M-pyrifera_M_contig123041.4737.1|Name=mRNA_M-pyrifera_M_contig123041.4737.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MLKDKEMRKEFFKVMEDMSDPKYRAEQEQYLRELEARAQIPEGMQLVKPD
AAFALQLESDAGLACFANVGYTDKVDKPGSGVSGIPVVTSPPRYELNAKE
ERTLTFDVVFHPEVIAGARSGRFYMQLLALVT
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mRNA from alignment at M-pyrifera_M_contig123041:3..419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123041.4737.1 ID=mRNA_M-pyrifera_M_contig123041.4737.1|Name=mRNA_M-pyrifera_M_contig123041.4737.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig123041:3..419+ (Macrocystis pyrifera P11B4 male)
GAAAGCAATCGTATTGTGGAGATGTTGAAGGATAAGGAGATGCGTAAGGA GTTTTTCAAGGTAATGGAGGATATGTCTGATCCCAAGTACCGCGCAGAGC AGGAACAATACTTGCGTGAGTTGGAAGCACGCGCTCAGATTCCAGAGGGG ATGCAATTGGTGAAACCTGATGCTGCTTTCGCATTGCAACTTGAGTCAGA TGCAGGGTTAGCATGCTTTGCGAATGTTGGATACACGGATAAAGTAGATA AGCCAGGGAGCGGTGTTTCTGGGATTCCTGTGGTGACTTCTCCTCCTCGC TATGAGCTGAACGCCAAAGAAGAGCGTACACTCACATTTGACGTAGTATT TCATCCTGAAGTGATTGCTGGTGCAAGGTCAGGACGCTTCTACATGCAAC TCCTCGCCCTTGTTACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123041:3..419+

>mRNA_M-pyrifera_M_contig123041.4737.1 ID=mRNA_M-pyrifera_M_contig123041.4737.1|Name=mRNA_M-pyrifera_M_contig123041.4737.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig123041:3..419+ (Macrocystis pyrifera P11B4 male)
ATGTTGAAGGATAAGGAGATGCGTAAGGAGTTTTTCAAGGTAATGGAGGA
TATGTCTGATCCCAAGTACCGCGCAGAGCAGGAACAATACTTGCGTGAGT
TGGAAGCACGCGCTCAGATTCCAGAGGGGATGCAATTGGTGAAACCTGAT
GCTGCTTTCGCATTGCAACTTGAGTCAGATGCAGGGTTAGCATGCTTTGC
GAATGTTGGATACACGGATAAAGTAGATAAGCCAGGGAGCGGTGTTTCTG
GGATTCCTGTGGTGACTTCTCCTCCTCGCTATGAGCTGAACGCCAAAGAA
GAGCGTACACTCACATTTGACGTAGTATTTCATCCTGAAGTGATTGCTGG
TGCAAGGTCAGGACGCTTCTACATGCAACTCCTCGCCCTTGTTACCATGT
TGAAGGATAAGGAGATGCGTAAGGAGTTTTTCAAGGTAATGGAGGATATG
TCTGATCCCAAGTACCGCGCAGAGCAGGAACAATACTTGCGTGAGTTGGA
AGCACGCGCTCAGATTCCAGAGGGGATGCAATTGGTGAAACCTGATGCTG
CTTTCGCATTGCAACTTGAGTCAGATGCAGGGTTAGCATGCTTTGCGAAT
GTTGGATACACGGATAAAGTAGATAAGCCAGGGAGCGGTGTTTCTGGGAT
TCCTGTGGTGACTTCTCCTCCTCGCTATGAGCTGAACGCCAAAGAAGAGC
GTACACTCACATTTGACGTAGTATTTCATCCTGAAGTGATTGCTGGTGCA
AGGTCAGGACGCTTCTACATGCAACTCCTCGCCCTTGTTACC
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