mRNA_M-pyrifera_M_contig122998.4727.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122998.4727.1
Unique NamemRNA_M-pyrifera_M_contig122998.4727.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: A0A059FA61_9PROT (Group 1 glycosyl transferase n=5 Tax=Hyphomonas TaxID=85 RepID=A0A059FA61_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 4.750e-8
Identity = 40/149 (26.85%), Postives = 73/149 (48.99%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVYTNLQL---VLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRAQYLAL 438
            Y    R + AII  S+  + ++ ++ AV PN + + P +    L  +        +S++D AE R +  +   Y+ YP    PHKNHLRL EAM ++     +   +++TG  H P + EA+   + +  + ++V   G +   +  A+
Sbjct:  153 YRAACRTSHAIIVNSQWIKDDVVAQFAVSPNKVQIIPEAAPTQLLAE--------VSEEDKAETRAKYVLPERYIFYPNNTWPHKNHLRLFEAMAWLRDEKGVTVPLVSTGARHEP-SREALDNRVRELGLENQVQFLGFVSNEELRAI 292          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: A0A838LH89_9ACTN (Glycosyltransferase family 4 protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A838LH89_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.580e-6
Identity = 48/148 (32.43%), Postives = 69/148 (46.62%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYV---YTNLQLVLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRAQYLA 435
            Y    R A A+I +SE ++ +I     +DP+T+ V+   VD S +  PV  E E                   +++YPA   PHKNH RLLEAMR V      L+LVLT G   + G  + +   +D + +  R  +     RA  LA
Sbjct:  155 YDRPTRRASAVITISEFSKQQIVRHYGLDPDTVHVAHLGVDTSHFA-PVVGERE------------------DFVLYPARGWPHKNHGRLLEAMRLVREEVPGLRLVLTGGGLDSLG--DDLPEWVDRRGLVSREELLSLYRRASVLA 281          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: UPI001FFB5CCB (glycosyltransferase family 4 protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001FFB5CCB)

HSP 1 Score: 54.3 bits (129), Expect = 8.890e-6
Identity = 40/149 (26.85%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVYTN---LQLVLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRAQYLAL 438
            +V  +R A  IIC SE  +++I     V    + V        +   P+          ++ EVR ++ +   +++YPA F PHKNHLRL++A + V      L+LVLT  +  +    E + RA+ +  +   +L  G + ++   A+
Sbjct:  131 HVCLSRRAGRIICESEYVKSDIVRFFGVRDECVAV--------IAAPPLRQRTAEFDAAELEEVRGRLRLPDRFILYPAQFWPHKNHLRLIDAFKQVVAKAPELKLVLTGKKRDD---YEVVMRAVGEAGLEGNILHLGYIEQSDLQAI 268          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: UPI0019933B91 (Glycosyltransferase family 4 protein n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=UPI0019933B91)

HSP 1 Score: 53.9 bits (128), Expect = 1.180e-5
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYV---YTNLQLVLTTGETHNPGA 345
            Y   AR ADA+I +SE  ++ + + L + P  I V+  +VD        A +Y           R   G   ++++YPA   PHKNH RL+ AMR V     ++QLVLT G     GA
Sbjct:  139 YEGAARRADAVITISEFAKSRMVALLDLAPGKIHVAHLAVD--------AEQY-----------RPNFGARKSFVLYPARGWPHKNHTRLIAAMRRVRDEIPDMQLVLTGGGLDTLGA 237          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: A0A354F3Y5_9BACT (Uncharacterized protein n=5 Tax=Nitrospirae TaxID=40117 RepID=A0A354F3Y5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPS-------VDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEA---MRYVYTNLQLVLTTGETHN 336
            Y  +A  AD II +SE T+  +  +  +    I V+ P        +DD+  ++ V S+Y+L+S+               +++YPA+  PHKNH++LLEA   +R  Y+  + V+ TG + N
Sbjct:  175 YRPSAERADVIIAISEYTKKTLIEKYNIKAKKIVVAYPGCSKDFKKIDDTALLNSVRSKYDLLSE---------------FMLYPASTWPHKNHIKLLEAISILRSKYSFEKPVVLTGASQN 281          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: UPI000BEA95DD (FkbM family methyltransferase n=1 Tax=Bradyrhizobium ottawaense TaxID=931866 RepID=UPI000BEA95DD)

HSP 1 Score: 53.5 bits (127), Expect = 1.940e-5
Identity = 41/144 (28.47%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVY-----TNLQLVLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALP 417
            Y  +A  ADAI+  S+  R ++ +++ V P  +F  P +     W   V +     S +D      +  +   Y+VYPA F PHKNH RL++A+R V       +L+LV T    H+     A++  I++  +   V+    +P
Sbjct:  736 YSLSASLADAIVVSSDFVRDDLITQMQVPPTKVFTVPVT-----WDPRVIAGLSAFSIEDAIS---RYNLPSRYVVYPAQFWPHKNHARLVQALRIVRDKRPNADLKLVFTGYRGHS--GWPAVKATIEELGLGPHVVCIDHVP 869          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: UPI0015EFAE6A (glycosyltransferase family 4 protein n=1 Tax=Pseudarthrobacter sp. B4EP4b TaxID=2590664 RepID=UPI0015EFAE6A)

HSP 1 Score: 52.4 bits (124), Expect = 4.090e-5
Identity = 35/111 (31.53%), Postives = 51/111 (45.95%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVYTN---LQLVLTTG 324
            Y   ARDADAI+ +S+  +  I + L +DP  IF +   V                   D  E    +G    +++YPA    HKNH  L EAM+ +  +   L+L+LT G
Sbjct:  136 YEKAARDADAIVTISDFAKESIVNHLGIDPGKIFTAHLGV-------------------DAKEFTPNLGQRGKFIMYPARGWKHKNHATLFEAMKLLAVSDPELRLILTGG 227          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: A0A496Q3N8_9BACT (Glycos_transf_1 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A496Q3N8_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 4.190e-5
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  220 YLVYPAAFRPHKNHLRLLEAMRYVYTNL-------QLVLT-TGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRAQYLA 435
            + +YPA F PHKNHLRLLEA R     +        LVLT  G T    A + +  AI ++ ++ RV+ AG L RA YLA
Sbjct:  211 FFIYPANFWPHKNHLRLLEAFRLFLDAVPERSDVWSLVLTGAGRT----AGDDVDCAIQEQGLAGRVIRAGYLERADYLA 286          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: A0A4Q5N5H9_9CELL (D-inositol 3-phosphate glycosyltransferase n=2 Tax=Cellulomonas sp. HLT2-17 TaxID=1259133 RepID=A0A4Q5N5H9_9CELL)

HSP 1 Score: 52.4 bits (124), Expect = 4.190e-5
Identity = 39/118 (33.05%), Postives = 54/118 (45.76%), Query Frame = 1
Query:    1 YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVYTN---LQLVLTTGETHNPGA 345
            Y   AR ADA+I +SE  +  I + L +DP  I V+   V                   D A     +G    +L YPA    HKNH RL+EA+R +  +   L+LVLT G   + G+
Sbjct:  173 YDAAARRADAVITISEFAKASIVARLGIDPGRITVAHLGV-------------------DAAAYSPHLGERSNFLFYPARGWAHKNHARLVEAVRLLRVDDPTLRLVLTGGGLESLGS 271          
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Match: UPI0019802136 (glycosyltransferase family 4 protein n=1 Tax=Rhodoferax bucti TaxID=2576305 RepID=UPI0019802136)

HSP 1 Score: 52.0 bits (123), Expect = 5.750e-5
Identity = 40/137 (29.20%), Postives = 65/137 (47.45%), Query Frame = 1
Query:   22 ADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVASEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYV---YTNLQLVLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRA 423
            +DA++  SE  R ++     V PN          + +W  P  +   L+     A+     G+   ++ YPA F PHKNHLRLLEA+  V   + ++ LVL+ G+ H     +A  +A+    +  +V   G +P A
Sbjct:  172 SDAVLVDSEVGRVQVVESYHV-PN----------ERIWQLPYVAPSYLLDTTPRADFDAHYGLPERFVFYPAQFWPHKNHLRLLEAISIVANAHPDIALVLSGGKQHAFEQVQAQAKALC---IDSKVFFVGYVPDA 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122998.4727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A059FA61_9PROT4.750e-826.85Group 1 glycosyl transferase n=5 Tax=Hyphomonas Ta... [more]
A0A838LH89_9ACTN2.580e-632.43Glycosyltransferase family 4 protein n=2 Tax=uncla... [more]
UPI001FFB5CCB8.890e-626.85glycosyltransferase family 4 protein n=2 Tax=uncla... [more]
UPI0019933B911.180e-534.75Glycosyltransferase family 4 protein n=1 Tax=Candi... [more]
A0A354F3Y5_9BACT1.260e-530.33Uncharacterized protein n=5 Tax=Nitrospirae TaxID=... [more]
UPI000BEA95DD1.940e-528.47FkbM family methyltransferase n=1 Tax=Bradyrhizobi... [more]
UPI0015EFAE6A4.090e-531.53glycosyltransferase family 4 protein n=1 Tax=Pseud... [more]
A0A496Q3N8_9BACT4.190e-543.75Glycos_transf_1 domain-containing protein n=1 Tax=... [more]
A0A4Q5N5H9_9CELL4.190e-533.05D-inositol 3-phosphate glycosyltransferase n=2 Tax... [more]
UPI00198021365.750e-529.20glycosyltransferase family 4 protein n=1 Tax=Rhodo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122998contigM-pyrifera_M_contig122998:80..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog1280952.HJA_13135
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG0438@1,COG0438@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.0559056-CDS-M-pyrifera_M_contig122998:79..5171622815749.0559056-CDS-M-pyrifera_M_contig122998:79..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122998 80..517 +
1692277551.2607434-CDS-M-pyrifera_M_contig122998:79..5171692277551.2607434-CDS-M-pyrifera_M_contig122998:79..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122998 80..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122998.4727.1prot_M-pyrifera_M_contig122998.4727.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122998 80..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122998.4727.1

>prot_M-pyrifera_M_contig122998.4727.1 ID=prot_M-pyrifera_M_contig122998.4727.1|Name=mRNA_M-pyrifera_M_contig122998.4727.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
YVDTARDADAIICLSEPTRTEIASELAVDPNTIFVSPPSVDDSLWVDPVA
SEYELISDDDIAEVRRQVGVTFTYLVYPAAFRPHKNHLRLLEAMRYVYTN
LQLVLTTGETHNPGAAEAMQRAIDDKNMSHRVLVAGALPRAQYLAL
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mRNA from alignment at M-pyrifera_M_contig122998:80..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122998.4727.1 ID=mRNA_M-pyrifera_M_contig122998.4727.1|Name=mRNA_M-pyrifera_M_contig122998.4727.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig122998:80..517+ (Macrocystis pyrifera P11B4 male)
TACGTGGACACCGCGCGTGATGCCGATGCGATCATCTGTCTGAGTGAGCC GACCCGGACCGAGATCGCGTCGGAGCTAGCGGTCGACCCCAACACGATCT TCGTGTCGCCTCCCTCGGTCGACGATTCCCTCTGGGTCGATCCGGTGGCG AGCGAGTACGAGCTGATCTCCGATGACGACATCGCAGAGGTTCGTCGACA GGTGGGTGTCACGTTCACCTATCTCGTGTACCCGGCGGCGTTTCGGCCCC ACAAGAACCACCTCCGCCTTCTCGAGGCGATGCGGTACGTCTACACGAAT CTGCAGCTCGTGCTCACCACCGGTGAGACCCACAACCCTGGGGCGGCCGA AGCGATGCAGCGCGCCATCGACGACAAGAACATGTCGCATCGTGTCCTAG TGGCCGGGGCCCTCCCCCGAGCGCAGTATCTGGCGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122998:80..517+

>mRNA_M-pyrifera_M_contig122998.4727.1 ID=mRNA_M-pyrifera_M_contig122998.4727.1|Name=mRNA_M-pyrifera_M_contig122998.4727.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig122998:80..517+ (Macrocystis pyrifera P11B4 male)
TACGTGGACACCGCGCGTGATGCCGATGCGATCATCTGTCTGAGTGAGCC
GACCCGGACCGAGATCGCGTCGGAGCTAGCGGTCGACCCCAACACGATCT
TCGTGTCGCCTCCCTCGGTCGACGATTCCCTCTGGGTCGATCCGGTGGCG
AGCGAGTACGAGCTGATCTCCGATGACGACATCGCAGAGGTTCGTCGACA
GGTGGGTGTCACGTTCACCTATCTCGTGTACCCGGCGGCGTTTCGGCCCC
ACAAGAACCACCTCCGCCTTCTCGAGGCGATGCGGTACGTCTACACGAAT
CTGCAGCTCGTGCTCACCACCGGTGAGACCCACAACCCTGGGGCGGCCGA
AGCGATGCAGCGCGCCATCGACGACAAGAACATGTCGCATCGTGTCCTAG
TGGCCGGGGCCCTCCCCCGAGCGCAGTATCTGGCGTTGTACGTGGACACC
GCGCGTGATGCCGATGCGATCATCTGTCTGAGTGAGCCGACCCGGACCGA
GATCGCGTCGGAGCTAGCGGTCGACCCCAACACGATCTTCGTGTCGCCTC
CCTCGGTCGACGATTCCCTCTGGGTCGATCCGGTGGCGAGCGAGTACGAG
CTGATCTCCGATGACGACATCGCAGAGGTTCGTCGACAGGTGGGTGTCAC
GTTCACCTATCTCGTGTACCCGGCGGCGTTTCGGCCCCACAAGAACCACC
TCCGCCTTCTCGAGGCGATGCGGTACGTCTACACGAATCTGCAGCTCGTG
CTCACCACCGGTGAGACCCACAACCCTGGGGCGGCCGAAGCGATGCAGCG
CGCCATCGACGACAAGAACATGTCGCATCGTGTCCTAGTGGCCGGGGCCC
TCCCCCGAGCGCAGTATCTGGCGTTG
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