mRNA_M-pyrifera_M_contig122948.4713.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122948.4713.1
Unique NamemRNA_M-pyrifera_M_contig122948.4713.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122948.4713.1 vs. uniprot
Match: X0U7W7_9ZZZZ (C-type lectin domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0U7W7_9ZZZZ)

HSP 1 Score: 60.1 bits (144), Expect = 1.940e-8
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:    1 PTCISMHAASEGTAFAEYSVPASTYFLLTGCAALHDSDTPPESPLTFRVLADGELLWSSDPIQVSGVRAPFQVLLPPALSASESIKLRLEVVCPGSNTNARSVFATPSL 327
            P  +SMH  S G +   Y +    +   +  AA +D      +P+TF+VL DG+LLW S PIQV G     +V        S   KL L V CPG ++ A +V+  P L
Sbjct:   82 PKGLSMHPLSNGASHVAYRLDGK-FRSFSAAAAQNDDMGSSSTPMTFKVLGDGKLLWVSPPIQVKGAAQECRV------DVSGVSKLELVVECPGIDSQAHAVWVEPRL 183
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BLAST of mRNA_M-pyrifera_M_contig122948.4713.1 vs. uniprot
Match: D2R3J4_PIRSD (Glycosyl hydrolase family 98 putative carbohydrate binding module n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2R3J4_PIRSD)

HSP 1 Score: 52.4 bits (124), Expect = 1.580e-5
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   79 LLTGCAALHDSDTPPE-SPLTFRVLADGELLWSSDPIQ-VSGVRAPFQVLLPPALSASESIKLRLEVVCPGSNTNARSVF 312
            +LTG  + +DS T    +PLT RV+ DG++LW+S PI+ VS V+A FQV        +   +L+LEVVCPG+N  + +V+
Sbjct:  524 MLTGAVSQNDSATDLAFTPLTMRVVGDGQVLWASRPIRSVSDVQA-FQV------DITGVNQLQLEVVCPGNNGKSHAVW 596
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122948.4713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
X0U7W7_9ZZZZ1.940e-835.78C-type lectin domain-containing protein (Fragment)... [more]
D2R3J4_PIRSD1.580e-543.75Glycosyl hydrolase family 98 putative carbohydrate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122948contigM-pyrifera_M_contig122948:54..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.450849-UTR-M-pyrifera_M_contig122948:53..681622815748.450849-UTR-M-pyrifera_M_contig122948:53..68Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122948 54..68 +
1692277551.0068262-UTR-M-pyrifera_M_contig122948:53..681692277551.0068262-UTR-M-pyrifera_M_contig122948:53..68Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122948 54..68 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.466657-CDS-M-pyrifera_M_contig122948:68..3801622815748.466657-CDS-M-pyrifera_M_contig122948:68..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122948 69..380 +
1692277551.0175486-CDS-M-pyrifera_M_contig122948:68..3801692277551.0175486-CDS-M-pyrifera_M_contig122948:68..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122948 69..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122948.4713.1prot_M-pyrifera_M_contig122948.4713.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122948 69..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122948.4713.1

>prot_M-pyrifera_M_contig122948.4713.1 ID=prot_M-pyrifera_M_contig122948.4713.1|Name=mRNA_M-pyrifera_M_contig122948.4713.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MHAASEGTAFAEYSVPASTYFLLTGCAALHDSDTPPESPLTFRVLADGEL
LWSSDPIQVSGVRAPFQVLLPPALSASESIKLRLEVVCPGSNTNARSVFA
TPSL
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mRNA from alignment at M-pyrifera_M_contig122948:54..380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122948.4713.1 ID=mRNA_M-pyrifera_M_contig122948.4713.1|Name=mRNA_M-pyrifera_M_contig122948.4713.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig122948:54..380+ (Macrocystis pyrifera P11B4 male)
CCCACCTGCATCTCCATGCACGCCGCCAGCGAAGGCACCGCGTTTGCCGA
GTACTCGGTGCCAGCATCCACCTACTTCCTCCTCACCGGCTGCGCCGCGC
TGCACGACAGCGACACCCCCCCGGAGTCGCCGCTCACCTTCCGCGTCCTC
GCCGACGGCGAGCTGCTGTGGAGCTCCGACCCCATCCAGGTGTCCGGCGT
CAGAGCGCCTTTCCAGGTGCTGCTGCCGCCGGCGCTGTCCGCCTCGGAGT
CCATCAAGCTGCGCCTCGAGGTGGTGTGCCCCGGCTCCAACACCAACGCG
CGCTCCGTGTTCGCCACCCCCTCCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122948:54..380+

>mRNA_M-pyrifera_M_contig122948.4713.1 ID=mRNA_M-pyrifera_M_contig122948.4713.1|Name=mRNA_M-pyrifera_M_contig122948.4713.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig122948:54..380+ (Macrocystis pyrifera P11B4 male)
ATGCACGCCGCCAGCGAAGGCACCGCGTTTGCCGAGTACTCGGTGCCAGC
ATCCACCTACTTCCTCCTCACCGGCTGCGCCGCGCTGCACGACAGCGACA
CCCCCCCGGAGTCGCCGCTCACCTTCCGCGTCCTCGCCGACGGCGAGCTG
CTGTGGAGCTCCGACCCCATCCAGGTGTCCGGCGTCAGAGCGCCTTTCCA
GGTGCTGCTGCCGCCGGCGCTGTCCGCCTCGGAGTCCATCAAGCTGCGCC
TCGAGGTGGTGTGCCCCGGCTCCAACACCAACGCGCGCTCCGTGTTCGCC
ACCCCCTCCCTGATGCACGCCGCCAGCGAAGGCACCGCGTTTGCCGAGTA
CTCGGTGCCAGCATCCACCTACTTCCTCCTCACCGGCTGCGCCGCGCTGC
ACGACAGCGACACCCCCCCGGAGTCGCCGCTCACCTTCCGCGTCCTCGCC
GACGGCGAGCTGCTGTGGAGCTCCGACCCCATCCAGGTGTCCGGCGTCAG
AGCGCCTTTCCAGGTGCTGCTGCCGCCGGCGCTGTCCGCCTCGGAGTCCA
TCAAGCTGCGCCTCGAGGTGGTGTGCCCCGGCTCCAACACCAACGCGCGC
TCCGTGTTCGCCACCCCCTCCCTG
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