mRNA_M-pyrifera_M_contig122917.4703.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: A0A0W7WH79_9RHOB (Uncharacterized protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0W7WH79_9RHOB) HSP 1 Score: 304 bits (778), Expect = 6.650e-102 Identity = 152/162 (93.83%), Postives = 156/162 (96.30%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
F+GLY SFLFL+A F LAWVVYNHT WGAAVIAVGNSEENARLAGVNVDRVKIGVFM S LCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANW+LWQSRQ+EAH
Sbjct: 157 FLGLYWSFLFLLALFALAWVVYNHTSWGAAVIAVGNSEENARLAGVNVDRVKIGVFMVSGLCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWLLWQSRQVEAH 318
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: UPI001487E6C6 (ABC transporter permease n=2 Tax=Ruegeria TaxID=97050 RepID=UPI001487E6C6) HSP 1 Score: 297 bits (760), Expect = 3.610e-99 Identity = 144/162 (88.89%), Postives = 155/162 (95.68%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
FMG Y SFLFLV FVLA++VYNHTRWG+ V+A+GNSEENA+LAG+NVDRVKIG+FMFS LCSGFAGIMLS+RMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIG+INNALNLLNVEDVWHQVFKGAVILAALGANW+LWQSRQ EAH
Sbjct: 157 FMGFYWSFLFLVVLFVLAYIVYNHTRWGSYVVAIGNSEENAKLAGINVDRVKIGIFMFSGLCSGFAGIMLSTRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGVINNALNLLNVEDVWHQVFKGAVILAALGANWVLWQSRQAEAH 318
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: UPI0015CDE165 (ABC transporter permease n=1 Tax=Jannaschia marina TaxID=2741674 RepID=UPI0015CDE165) HSP 1 Score: 284 bits (727), Expect = 5.450e-94 Identity = 138/162 (85.19%), Postives = 152/162 (93.83%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
F+G+YLSF FLVA F LA+VVYNHTR G +IA+GNSEENA+LAG+N+DRVKIG+FMFS LCSGFAG+MLS+RMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIG++NNALNLLNVEDVWHQVFKG VILAALGANWILWQSR+ AH
Sbjct: 169 FLGIYLSFWFLVALFGLAYVVYNHTRIGTCIIAIGNSEENAKLAGINIDRVKIGIFMFSGLCSGFAGVMLSTRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGLVNNALNLLNVEDVWHQVFKGLVILAALGANWILWQSREATAH 330
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: A0A1M5QIP9_9RHOB (Ribose transport system permease protein n=1 Tax=Cognatishimia maritima TaxID=870908 RepID=A0A1M5QIP9_9RHOB) HSP 1 Score: 281 bits (719), Expect = 6.070e-93 Identity = 137/160 (85.62%), Postives = 150/160 (93.75%), Query Frame = 1
Query: 7 GLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
G Y SFLFLVA F LA+VVYNHTRWGA VIA+GNSEENA+LAG+NVDRVKIG+FMFSALCSGFAG++LSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGT+ GAFWGLLFIG+ NNALNLLNV DVWHQVFKG++ILAALGAN++LWQSRQ EA
Sbjct: 159 GFYASFLFLVALFALAYVVYNHTRWGAYVIAIGNSEENAKLAGINVDRVKIGIFMFSALCSGFAGVILSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTVTGAFWGLLFIGVTNNALNLLNVTDVWHQVFKGSIILAALGANYVLWQSRQAEAQ 318
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: A0A1I6HDS5_9RHOB (Ribose transport system permease protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I6HDS5_9RHOB) HSP 1 Score: 274 bits (700), Expect = 4.500e-90 Identity = 133/160 (83.12%), Postives = 146/160 (91.25%), Query Frame = 1
Query: 7 GLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
G+YLSFLFL+ A+VVYNHTR GAA+IA+GNSEENA+LAG+NVDRVKIG+FMFS LCSGFAGIMLS+RMGFVQPGLDGNGLLLD IAAIIIGGTLI GGRGTIGGA WG+ FIGI+NNALNLLNVEDVWHQVFKG VILAALG NW+LWQS+Q EAH
Sbjct: 158 GIYLSFLFLIGLCAAAYVVYNHTRIGAAIIAIGNSEENAKLAGINVDRVKIGIFMFSGLCSGFAGIMLSTRMGFVQPGLDGNGLLLDAIAAIIIGGTLIQGGRGTIGGALWGIAFIGIVNNALNLLNVEDVWHQVFKGVVILAALGVNWLLWQSKQSEAH 317
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: UPI0009E42312 (ABC transporter permease n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI0009E42312) HSP 1 Score: 271 bits (693), Expect = 5.360e-89 Identity = 135/161 (83.85%), Postives = 147/161 (91.30%), Query Frame = 1
Query: 4 MGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
+G+YLS FL+A LA+VVYNHTR GAA+IA+GNSE+NA+LAG+NVDRVKIGVFMFS LCSGFAGIMLS+RMGFVQPGLDGNGLLLD IAAIIIGGTLI GGRGTIGGA WG+ FIGIINNALNLLNVEDVWHQVFKG VILAALG NW+LWQSRQ EAH
Sbjct: 158 LGIYLSVWFLIALGGLAYVVYNHTRIGAAIIAIGNSEDNAKLAGINVDRVKIGVFMFSGLCSGFAGIMLSTRMGFVQPGLDGNGLLLDAIAAIIIGGTLIQGGRGTIGGALWGVAFIGIINNALNLLNVEDVWHQVFKGLVILAALGVNWLLWQSRQSEAH 318
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: UPI000DF382F9 (ABC transporter permease n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=UPI000DF382F9) HSP 1 Score: 268 bits (685), Expect = 8.760e-88 Identity = 129/162 (79.63%), Postives = 145/162 (89.51%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
F GLY SFLFL+A + A+ VYNHTRWG+ V+A+GNSE+NA+LAG++ DRVKIGVFMFS LCSG AGI+LS+RMGFVQPGLDGNGLLLD IAAIIIGGTLILGGRGTIGGA WGLLFIG+ NNALNLLNVEDVWH VFKG +IL ALG NW+LWQSRQ+EAH
Sbjct: 157 FAGLYWSFLFLLALYATAYFVYNHTRWGSYVVAIGNSEQNAQLAGIDTDRVKIGVFMFSGLCSGLAGIILSTRMGFVQPGLDGNGLLLDSIAAIIIGGTLILGGRGTIGGALWGLLFIGVTNNALNLLNVEDVWHLVFKGLIILVALGINWLLWQSRQVEAH 318
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: A0A3M1ADC0_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1ADC0_9PROT) HSP 1 Score: 268 bits (685), Expect = 1.410e-87 Identity = 132/158 (83.54%), Postives = 143/158 (90.51%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQ 474
F G Y SFLFLVA F LA VV TRWGA V+A+GNSEENARLAG+NVDRVKIG+FMFSALCSGFAG++LSSRMGFVQPGLDGNGLLLDGIAAI+IGGT ILGGRGT+ GAFWG+LFIGI+NNALNLLNVEDVWH VFKG VIL ALGANW+LWQSRQ
Sbjct: 172 FAGFYWSFLFLVALFALAHVVCTRTRWGAYVVAIGNSEENARLAGINVDRVKIGIFMFSALCSGFAGVVLSSRMGFVQPGLDGNGLLLDGIAAIVIGGTSILGGRGTVAGAFWGVLFIGIVNNALNLLNVEDVWHPVFKGGVILLALGANWLLWQSRQ 329
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: UPI000B25DE4C (ABC transporter permease n=1 Tax=Ectothiorhodospiraceae bacterium AqS1 TaxID=1725326 RepID=UPI000B25DE4C) HSP 1 Score: 263 bits (673), Expect = 6.360e-86 Identity = 132/162 (81.48%), Postives = 146/162 (90.12%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
F+G+Y+SFLFL A F LA++VYN T+ GA ++AVGNSEE A+LAG++V RVKIGVFMFSALCSGFAGIML+ RMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGT+GGA GLLFIGI+NNALNLLNVEDVWHQVFKG VIL ALGANWILWQSRQ E
Sbjct: 160 FLGVYISFLFLAALFALAYIVYNFTKIGAYIVAVGNSEEKAKLAGIDVVRVKIGVFMFSALCSGFAGIMLTPRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTVGGALLGLLFIGIVNNALNLLNVEDVWHQVFKGLVILVALGANWILWQSRQKEVQ 321
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Match: U4EBB6_9VIBR (Putative Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component n=6 Tax=Vibrio TaxID=662 RepID=U4EBB6_9VIBR) HSP 1 Score: 258 bits (660), Expect = 5.420e-84 Identity = 122/162 (75.31%), Postives = 147/162 (90.74%), Query Frame = 1
Query: 1 FMGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVKIGVFMFSALCSGFAGIMLSSRMGFVQPGLDGNGLLLDGIAAIIIGGTLILGGRGTIGGAFWGLLFIGIINNALNLLNVEDVWHQVFKGAVILAALGANWILWQSRQIEAH 486
F G Y+SFLFLV + LA+VVYNHTR GA +IA+GN+EENA+L+G+NVD VK+GVF F+ LCSGFAG++LS+RMGFVQPGLDGNG+L+DGIAAIIIGGTLILGG+GTIGGAFWG+LFIG+INN+LNLLNVEDVWH VFKG+VI+AAL NW+LWQSRQ ++
Sbjct: 157 FAGFYISFLFLVLLYALAYVVYNHTRIGAYIIAIGNNEENAKLSGINVDAVKVGVFTFAGLCSGFAGLVLSTRMGFVQPGLDGNGILMDGIAAIIIGGTLILGGKGTIGGAFWGVLFIGVINNSLNLLNVEDVWHLVFKGSVIIAALALNWLLWQSRQSTSY 318 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122917.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig122917.4703.1 >prot_M-pyrifera_M_contig122917.4703.1 ID=prot_M-pyrifera_M_contig122917.4703.1|Name=mRNA_M-pyrifera_M_contig122917.4703.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp MGLYLSFLFLVARFVLAWVVYNHTRWGAAVIAVGNSEENARLAGVNVDRVback to top mRNA from alignment at M-pyrifera_M_contig122917:3..491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig122917.4703.1 ID=mRNA_M-pyrifera_M_contig122917.4703.1|Name=mRNA_M-pyrifera_M_contig122917.4703.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig122917:3..491+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig122917:3..491+ >mRNA_M-pyrifera_M_contig122917.4703.1 ID=mRNA_M-pyrifera_M_contig122917.4703.1|Name=mRNA_M-pyrifera_M_contig122917.4703.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig122917:3..491+ (Macrocystis pyrifera P11B4 male)back to top |