mRNA_M-pyrifera_M_contig122810.4686.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122810.4686.1
Unique NamemRNA_M-pyrifera_M_contig122810.4686.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A2E8L8F2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L8F2_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 1.240e-56
Identity = 108/171 (63.16%), Postives = 131/171 (76.61%), Query Frame = 1
Query:    1 RDSSATSLGPSLDHIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            +DSSAT L  SL+H+DPD VELDESL+GR+ I+++EDFA DN   IG  F+I+F D + ETV V GIF D+SIYGNR++ LELW D + TG DQF+SV   +G+ ED ARAAI ++TD Y Q+ VD+REEFQER E  ID  L V NVLL V I+IALLGIAITLALSVFE
Sbjct:  763 QDSSATDLANSLEHLDPDFVELDESLIGRDTIWIYEDFAADNLLEIGDFFEIEFPDQVVETVTVGGIFTDASIYGNRVISLELWQDRYPTGGDQFLSVTTTNGIDEDRARAAILAITDSYPQLNVDSREEFQERQENSIDQALVVINVLLTVAIVIALLGIAITLALSVFE 933          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A7K1Z6V6_9ACTN (FtsX-like permease family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z6V6_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 1.540e-55
Identity = 105/171 (61.40%), Postives = 129/171 (75.44%), Query Frame = 1
Query:    1 RDSSATSLGPSLDHIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            RDSSA  L  SLDH+DPD V LDESL GRN+I+VHED A DN F +GS FDI+F DG  ETV VAGIF DSSIYGNR++ LELWAD F +  DQF+SV + DGV+E++ARAA++S TD+Y  + V+TR+EFQ+R  GQ+DS LTV NVL+ V ++IA        ALSVFE
Sbjct:  764 RDSSAADLAASLDHLDPDFVALDESLFGRNSIWVHEDMATDNDFVLGSAFDIEFPDGTVETVTVAGIFTDSSIYGNRVISLELWADRFPSSQDQFISVNIRDGVSEEQARAALQSYTDDYPTLNVETRDEFQDRQAGQVDSALTVINVLVGVSVLIAXXXXXXXXALSVFE 934          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A2E4XJU7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XJU7_9ACTN)

HSP 1 Score: 111 bits (277), Expect = 3.280e-25
Identity = 67/156 (42.95%), Postives = 103/156 (66.03%), Query Frame = 1
Query:   55 MVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNR-IVDLELWADH--FTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            ++++DESL G NA+++HED A   G  +GS   ++F D     + +AGIF+  S+  +  ++D  + A +       D FV VLV +GV+E  ARAAIE+V  +Y QI   T+EE +++++ QI+  LTV +VLL + +I+A+LG+AITLALSVFE
Sbjct:  648 IIDIDESLFGNNAVYLHEDEAQKYGVVVGSTLQVEFVDQSQRALKIAGIFSSKSVIDSGWLLDSSVKASNEKLVPQSDDFVGVLVREGVSEQAARAAIETVIGDYEQIEARTKEELKDQAQDQINQTLTVVSVLLFISVILAVLGVAITLALSVFE 803          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A2E3JA95_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3JA95_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.130e-24
Identity = 62/161 (38.51%), Postives = 106/161 (65.84%), Query Frame = 1
Query:   40 HIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNR-IVDLELWADH--FTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            H D  +++++E L+G NA+++HED A     ++GS   ++F D   + ++VAGIF+  S+  +  +VD  ++  +       D FV VL+ DGV+E EAR A+E+V  ++ Q+   T++E +E +E QI+  LT+ ++LL + +++A+LG+AITLALSVFE
Sbjct:  643 HFDIGLIDMNEVLIGNNAVYLHEDEAKKYELSLGSSIPVEFIDQSQKDLIVAGIFSSKSVIDSGWLVDSSVYESNANLVPQTDDFVGVLINDGVSEQEAREALEAVLVDFEQVKAQTKDEVKEDAENQINQTLTIVSILLFISVVLAVLGVAITLALSVFE 803          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A349B7F0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B7F0_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 9.750e-24
Identity = 69/145 (47.59%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   79 LGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            LG + IFVHED A D G   G E  + F+    +T  V GI AD++  GN ++  E    +FT   D  V    ADGVT  EAR+A+E+   E+ Q  +D R+EF +  E QID IL   NVLLL+ +IIA+LGIA TLALSVFE
Sbjct:  601 LGADGIFVHEDPARDLGLEAGDEVALAFSATGEQTFTVVGIHADATFAGNYVISTEAHDANFTDVTDGVVMARAADGVTPAEARSAVEAALVEFPQADIDDRQEFLDAQEAQIDQILVTVNVLLLLAVIIAVLGIANTLALSVFE 745          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A6L8H503_9ACTN (FtsX-like permease family protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8H503_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.750e-23
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   40 HIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            H+D D V       G N + VH D A+  G ++G    ++   G     VVAGIF DS++ G  +   E W  +F T VD F+SVL ADGV  D AR+AI+ V + Y Q+ V +REEF++    QID  L + NV L + ++IA+LGI  TLALSV E
Sbjct:  455 HLDVDPVAGTVRDPGPNDLLVHVDQAETYGLSVGDSLAVEVIGGQRADWVVAGIFEDSAVAGEWVTSAETWDSYFDTNVDLFLSVLAADGVALDVARSAIDDVAEGYPQVTVRSREEFRDAQTDQIDQALIIVNVFLGLSLVIAVLGIVATLALSVVE 612          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A6G2K656_9ACTN (FtsX-like permease family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K656_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.830e-23
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   40 HIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            H+D D V       G N + VH D A+  G ++G    ++   G     VVAGIF DS++ G  +   E W  +F T VD F+SVL ADGV  D AR+AI+ V + Y Q+ V +REEF++    QID  L + NV L + ++IA+LGI  TLALSV E
Sbjct:  646 HLDVDPVAGTVRDPGPNDLLVHVDQAETYGLSVGDSLAVEVIGGQRADWVVAGIFEDSAVAGEWVTSAETWDSYFDTNVDLFLSVLAADGVALDVARSAIDDVAEGYPQVTVRSREEFRDAQTDQIDQALIIVNVFLGLSLVIAVLGIVATLALSVVE 803          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A2E5NUM1_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NUM1_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 2.490e-23
Identity = 64/171 (37.43%), Postives = 101/171 (59.06%), Query Frame = 1
Query:    1 RDSSATSLGPSLDHIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            +D  A  L     H+D  ++E  E   G+  + +H D A D G + G E  ++F  G T  + VAGIF DS++ GN +VD+ ++  +  T    ++SVL  +G   D +RAA+E+ TD Y Q+ V+ R E +E  E Q+D +L++  V L + ++IA+LGI  T+ALSV+E
Sbjct:  635 KDLVAAELAILESHMDIQVIEGSEFGAGKGGVLIHVDPAADLGLSTGDEITLEFPGGRTSELTVAGIFQDSTLLGNWVVDVSVFDTYLPTAPLAWISVLFPEGADTDASRAAVEAYTDAYPQVAVEDRTELRETQEKQLDQLLSIIQVFLGLSLLIAVLGITNTMALSVYE 805          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A6B1BX01_9ACTN (FtsX-like permease family protein n=5 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BX01_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 3.380e-23
Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   40 HIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            H D ++     +  G   + +H D ADD    +G   +++F+DG T T  VA IF +++I+G+ ++DL  W  +     D F+S L A G T D+AR AIE  T  Y Q+ V  + EFQE  E QID+ L V N  L + +I+AL+G+A TLALSVFE
Sbjct:  630 HFDIEVTRGSLTDAGPGDVALHTDQADDLSVGVGDPVELEFSDGQTATFEVAAIFDNNAIFGSWLIDLADWDRYLVEQEDGFISALTAPGYTADQAREAIEQATLAYPQLNVRDQAEFQETQESQIDTFLGVVNAFLAISLIVALMGVANTLALSVFE 787          
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Match: A0A2D6UWJ9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UWJ9_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 3.400e-23
Identity = 62/152 (40.79%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   67 DESLLGRNAIFVHEDFADDNGFAIGSEFDIDFNDGITETVVVAGIFADSSIYGNR-IVDLELWADHFTTG--VDQFVSVLVADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLLLVVIIIALLGIAITLALSVFE 513
            D +LL  NA+++HED A   G  IGS   ++F D     +VVAGIF+  S+  +  ++D  +++ +       D FV VL+ +GV+ED+AR A+ESV  +Y Q+   T++E ++ +E QI+  +T+ +VLL + +++A+LG+AITLALSVFE
Sbjct:  679 DSTLLEDNALYIHEDEASKYGLGIGSFISVEFMDQSQMDLVVAGIFSSKSVIDSGWLLDSSVYSSNVNLAPQTDDFVGVLIKNGVSEDQARVALESVLVDYEQVRAQTKDEVKDEAENQINQTVTIVSVLLFISVVLAVLGVAITLALSVFE 830          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122810.4686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8L8F2_9ACTN1.240e-5663.16Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1Z6V6_9ACTN1.540e-5561.40FtsX-like permease family protein n=2 Tax=Acidimic... [more]
A0A2E4XJU7_9ACTN3.280e-2542.95Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E3JA95_9ACTN1.130e-2438.51Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A349B7F0_9ACTN9.750e-2447.59Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6L8H503_9ACTN1.750e-2343.04FtsX-like permease family protein (Fragment) n=1 T... [more]
A0A6G2K656_9ACTN1.830e-2343.04FtsX-like permease family protein n=2 Tax=Acidimic... [more]
A0A2E5NUM1_9ACTN2.490e-2337.43Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A6B1BX01_9ACTN3.380e-2341.14FtsX-like permease family protein n=5 Tax=Acidimic... [more]
A0A2D6UWJ9_9ACTN3.400e-2340.79Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122810contigM-pyrifera_M_contig122810:14..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score96.3
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog953739.SVEN_0693
KEGG koko:K02004
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC transporter (Permease)
EggNOG OGs2H37M@201174,COG3127@1,COG3127@2
COG Functional cat.Q
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.9240968-CDS-M-pyrifera_M_contig122810:13..5261622815746.9240968-CDS-M-pyrifera_M_contig122810:13..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122810 14..526 +
1692277550.1848936-CDS-M-pyrifera_M_contig122810:13..5261692277550.1848936-CDS-M-pyrifera_M_contig122810:13..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122810 14..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122810.4686.1prot_M-pyrifera_M_contig122810.4686.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122810 14..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122810.4686.1

>prot_M-pyrifera_M_contig122810.4686.1 ID=prot_M-pyrifera_M_contig122810.4686.1|Name=mRNA_M-pyrifera_M_contig122810.4686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
RDSSATSLGPSLDHIDPDMVELDESLLGRNAIFVHEDFADDNGFAIGSEF
DIDFNDGITETVVVAGIFADSSIYGNRIVDLELWADHFTTGVDQFVSVLV
ADGVTEDEARAAIESVTDEYSQIFVDTREEFQERSEGQIDSILTVFNVLL
LVVIIIALLGIAITLALSVFE
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mRNA from alignment at M-pyrifera_M_contig122810:14..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122810.4686.1 ID=mRNA_M-pyrifera_M_contig122810.4686.1|Name=mRNA_M-pyrifera_M_contig122810.4686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig122810:14..526+ (Macrocystis pyrifera P11B4 male)
CGCGACAGCTCGGCCACCAGCCTCGGGCCGTCGCTCGACCACATCGACCC GGACATGGTCGAGCTCGACGAATCGCTGCTGGGCCGCAATGCCATCTTCG TCCACGAGGACTTCGCCGACGACAACGGCTTCGCGATCGGTTCGGAGTTC GACATCGACTTCAACGACGGGATCACCGAGACCGTGGTCGTCGCCGGCAT CTTCGCCGACTCGAGCATCTACGGAAACCGCATCGTCGATCTCGAGTTGT GGGCCGACCACTTCACCACCGGTGTCGATCAGTTCGTCTCGGTCCTCGTC GCCGATGGTGTGACCGAAGACGAGGCGCGTGCCGCGATCGAATCGGTCAC CGACGAGTACTCGCAGATCTTCGTCGACACGCGCGAGGAGTTCCAGGAGC GGTCAGAGGGTCAGATCGATTCGATCCTCACGGTCTTCAACGTGCTGCTC CTCGTCGTGATCATCATCGCCCTCCTCGGCATCGCGATCACGCTCGCCCT CTCGGTGTTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122810:14..526+

>mRNA_M-pyrifera_M_contig122810.4686.1 ID=mRNA_M-pyrifera_M_contig122810.4686.1|Name=mRNA_M-pyrifera_M_contig122810.4686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig122810:14..526+ (Macrocystis pyrifera P11B4 male)
CGCGACAGCTCGGCCACCAGCCTCGGGCCGTCGCTCGACCACATCGACCC
GGACATGGTCGAGCTCGACGAATCGCTGCTGGGCCGCAATGCCATCTTCG
TCCACGAGGACTTCGCCGACGACAACGGCTTCGCGATCGGTTCGGAGTTC
GACATCGACTTCAACGACGGGATCACCGAGACCGTGGTCGTCGCCGGCAT
CTTCGCCGACTCGAGCATCTACGGAAACCGCATCGTCGATCTCGAGTTGT
GGGCCGACCACTTCACCACCGGTGTCGATCAGTTCGTCTCGGTCCTCGTC
GCCGATGGTGTGACCGAAGACGAGGCGCGTGCCGCGATCGAATCGGTCAC
CGACGAGTACTCGCAGATCTTCGTCGACACGCGCGAGGAGTTCCAGGAGC
GGTCAGAGGGTCAGATCGATTCGATCCTCACGGTCTTCAACGTGCTGCTC
CTCGTCGTGATCATCATCGCCCTCCTCGGCATCGCGATCACGCTCGCCCT
CTCGGTGTTCGAGCGCGACAGCTCGGCCACCAGCCTCGGGCCGTCGCTCG
ACCACATCGACCCGGACATGGTCGAGCTCGACGAATCGCTGCTGGGCCGC
AATGCCATCTTCGTCCACGAGGACTTCGCCGACGACAACGGCTTCGCGAT
CGGTTCGGAGTTCGACATCGACTTCAACGACGGGATCACCGAGACCGTGG
TCGTCGCCGGCATCTTCGCCGACTCGAGCATCTACGGAAACCGCATCGTC
GATCTCGAGTTGTGGGCCGACCACTTCACCACCGGTGTCGATCAGTTCGT
CTCGGTCCTCGTCGCCGATGGTGTGACCGAAGACGAGGCGCGTGCCGCGA
TCGAATCGGTCACCGACGAGTACTCGCAGATCTTCGTCGACACGCGCGAG
GAGTTCCAGGAGCGGTCAGAGGGTCAGATCGATTCGATCCTCACGGTCTT
CAACGTGCTGCTCCTCGTCGTGATCATCATCGCCCTCCTCGGCATCGCGA
TCACGCTCGCCCTCTCGGTGTTCGAG
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