mRNA_M-pyrifera_M_contig122802.4683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122802.4683.1
Unique NamemRNA_M-pyrifera_M_contig122802.4683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122802.4683.1 vs. uniprot
Match: A0A3D5DG90_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG90_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 4.570e-22
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 1 
Query:    1 KFRSSRIVTFAGLLFLLAEHGRQADGDVAWLLPHLDKTPLERVLYVFAQYDECDPTQFLSAYADVHALLSDGDIRRELIAASPRAAGD-PVQSEA-YAEIHALGARLMDELTRFALARHADWPLKIFRNWLL 390
            KFRS+R+VTFAGLLF + E    A G    L   L++TPL R+   F  Y   +   F+  Y  +H +LSD  IR EL+  SP +    PVQ    YA IH L   LM+ LT F LAR  DWP ++F +WLL
Sbjct:  209 KFRSTRVVTFAGLLFAIGE--ATASGYKTDLELELNRTPLGRIQSAFNSYPGVEFRAFIETYELLHRMLSDASIREELVRLSPISRDKVPVQYPGTYARIHDLSGELMEHLTEFILARRRDWPSQLFHSWLL 338
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122802.4683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D5DG90_9GAMM4.570e-2244.70Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122802contigM-pyrifera_M_contig122802:9..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.8025606-CDS-M-pyrifera_M_contig122802:8..4011622815746.8025606-CDS-M-pyrifera_M_contig122802:8..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122802 9..401 +
1692277550.1478102-CDS-M-pyrifera_M_contig122802:8..4011692277550.1478102-CDS-M-pyrifera_M_contig122802:8..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122802 9..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122802.4683.1prot_M-pyrifera_M_contig122802.4683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122802 9..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122802.4683.1

>prot_M-pyrifera_M_contig122802.4683.1 ID=prot_M-pyrifera_M_contig122802.4683.1|Name=mRNA_M-pyrifera_M_contig122802.4683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
KFRSSRIVTFAGLLFLLAEHGRQADGDVAWLLPHLDKTPLERVLYVFAQY
DECDPTQFLSAYADVHALLSDGDIRRELIAASPRAAGDPVQSEAYAEIHA
LGARLMDELTRFALARHADWPLKIFRNWLL*
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mRNA from alignment at M-pyrifera_M_contig122802:9..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122802.4683.1 ID=mRNA_M-pyrifera_M_contig122802.4683.1|Name=mRNA_M-pyrifera_M_contig122802.4683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig122802:9..401+ (Macrocystis pyrifera P11B4 male)
AAATTCCGGTCGAGCCGTATTGTGACGTTCGCCGGGCTGCTGTTTCTGTT
GGCCGAGCACGGGCGCCAGGCCGATGGCGATGTTGCCTGGCTCCTGCCAC
ACCTGGATAAAACGCCACTCGAACGTGTGTTGTACGTGTTTGCGCAGTAT
GACGAGTGCGATCCGACGCAATTCCTTTCTGCTTATGCCGACGTTCACGC
GCTGCTGTCCGATGGGGACATTCGGCGTGAATTGATTGCGGCGAGCCCGC
GTGCCGCCGGCGACCCGGTTCAAAGCGAGGCCTATGCGGAAATTCATGCA
CTGGGCGCGAGGCTGATGGATGAACTCACGCGTTTCGCGCTGGCGCGACA
TGCTGACTGGCCGCTGAAGATATTCCGCAACTGGCTGCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122802:9..401+

>mRNA_M-pyrifera_M_contig122802.4683.1 ID=mRNA_M-pyrifera_M_contig122802.4683.1|Name=mRNA_M-pyrifera_M_contig122802.4683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig122802:9..401+ (Macrocystis pyrifera P11B4 male)
AAATTCCGGTCGAGCCGTATTGTGACGTTCGCCGGGCTGCTGTTTCTGTT
GGCCGAGCACGGGCGCCAGGCCGATGGCGATGTTGCCTGGCTCCTGCCAC
ACCTGGATAAAACGCCACTCGAACGTGTGTTGTACGTGTTTGCGCAGTAT
GACGAGTGCGATCCGACGCAATTCCTTTCTGCTTATGCCGACGTTCACGC
GCTGCTGTCCGATGGGGACATTCGGCGTGAATTGATTGCGGCGAGCCCGC
GTGCCGCCGGCGACCCGGTTCAAAGCGAGGCCTATGCGGAAATTCATGCA
CTGGGCGCGAGGCTGATGGATGAACTCACGCGTTTCGCGCTGGCGCGACA
TGCTGACTGGCCGCTGAAGATATTCCGCAACTGGCTGCTCTAGAAATTCC
GGTCGAGCCGTATTGTGACGTTCGCCGGGCTGCTGTTTCTGTTGGCCGAG
CACGGGCGCCAGGCCGATGGCGATGTTGCCTGGCTCCTGCCACACCTGGA
TAAAACGCCACTCGAACGTGTGTTGTACGTGTTTGCGCAGTATGACGAGT
GCGATCCGACGCAATTCCTTTCTGCTTATGCCGACGTTCACGCGCTGCTG
TCCGATGGGGACATTCGGCGTGAATTGATTGCGGCGAGCCCGCGTGCCGC
CGGCGACCCGGTTCAAAGCGAGGCCTATGCGGAAATTCATGCACTGGGCG
CGAGGCTGATGGATGAACTCACGCGTTTCGCGCTGGCGCGACATGCTGAC
TGGCCGCTGAAGATATTCCGCAACTGGCTGCTCTAG
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