mRNA_M-pyrifera_M_contig122773.4674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122773.4674.1
Unique NamemRNA_M-pyrifera_M_contig122773.4674.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122773.4674.1 vs. uniprot
Match: A0A2D9C4M7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9C4M7_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 5.260e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   10 ETVAMPESSREKHV-RSMTFILCMGMLAGVLIWAKLRLVTDIPRSAYAEPEE 162
            ET +   S R+    RS++ +LC+G LAGVLIWAKLRLVTDIPRSAYAEP+E
Sbjct:    5 ETTSSDRSQRQSGATRSLSLLLCLGALAGVLIWAKLRLVTDIPRSAYAEPKE 56
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BLAST of mRNA_M-pyrifera_M_contig122773.4674.1 vs. uniprot
Match: A0A3M2CD87_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CD87_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 3.870e-11
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   28 ESSREKHVRSMTFILCMGMLAGVLIWAKLRLVTDIPRSAYAEPE 159
            ESSR++  R   F+L  G LAGVLIWAKLRLV +IPRSAYAEP+
Sbjct:    2 ESSRDRRSRQAAFVLSAGALAGVLIWAKLRLVENIPRSAYAEPD 45
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BLAST of mRNA_M-pyrifera_M_contig122773.4674.1 vs. uniprot
Match: A0A812XXM1_9DINO (XcpT protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XXM1_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-9
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   40 EKHVRSMTFILCMGMLAGVLIWAKLRLVTDIPRSAYAEPEEV 165
            ++  R++TF+L +GMLAGVLIWAKLRLVTD+PRSA A P+EV
Sbjct:  329 QRRSRALTFMLSLGMLAGVLIWAKLRLVTDLPRSALAVPKEV 370
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BLAST of mRNA_M-pyrifera_M_contig122773.4674.1 vs. uniprot
Match: A0A7C5WN16_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WN16_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.360e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   82 MLAGVLIWAKLRLVTDIPRSAYAEPEEVTADQ 177
            + AG+L W KLRLV+DIPRSAYAEP E  ADQ
Sbjct:   13 LFAGMLFWTKLRLVSDIPRSAYAEPREKQADQ 44
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122773.4674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D9C4M7_9BACT5.260e-1365.38Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3M2CD87_9BACT3.870e-1168.18Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A812XXM1_9DINO2.010e-969.05XcpT protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A7C5WN16_9BACT3.360e-671.88Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122773contigM-pyrifera_M_contig122773:159..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3628428-CDS-M-pyrifera_M_contig122773:158..3711622815746.3628428-CDS-M-pyrifera_M_contig122773:158..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122773 159..371 +
1692277549.8888772-CDS-M-pyrifera_M_contig122773:158..3711692277549.8888772-CDS-M-pyrifera_M_contig122773:158..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122773 159..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122773.4674.1prot_M-pyrifera_M_contig122773.4674.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122773 159..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122773.4674.1

>prot_M-pyrifera_M_contig122773.4674.1 ID=prot_M-pyrifera_M_contig122773.4674.1|Name=mRNA_M-pyrifera_M_contig122773.4674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MARETVAMPESSREKHVRSMTFILCMGMLAGVLIWAKLRLVTDIPRSAYA
EPEEVTADQIESTAASAHADD
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mRNA from alignment at M-pyrifera_M_contig122773:159..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122773.4674.1 ID=mRNA_M-pyrifera_M_contig122773.4674.1|Name=mRNA_M-pyrifera_M_contig122773.4674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig122773:159..371+ (Macrocystis pyrifera P11B4 male)
ATGGCACGGGAGACTGTTGCCATGCCTGAAAGCTCACGCGAGAAACACGT
CCGTTCGATGACCTTCATTCTCTGTATGGGCATGCTGGCAGGGGTCCTGA
TCTGGGCGAAGCTCCGTCTTGTCACTGATATCCCGCGCAGCGCTTATGCT
GAGCCTGAGGAAGTGACTGCGGATCAGATCGAAAGCACAGCGGCGTCGGC
GCATGCGGACGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122773:159..371+

>mRNA_M-pyrifera_M_contig122773.4674.1 ID=mRNA_M-pyrifera_M_contig122773.4674.1|Name=mRNA_M-pyrifera_M_contig122773.4674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig122773:159..371+ (Macrocystis pyrifera P11B4 male)
ATGGCACGGGAGACTGTTGCCATGCCTGAAAGCTCACGCGAGAAACACGT
CCGTTCGATGACCTTCATTCTCTGTATGGGCATGCTGGCAGGGGTCCTGA
TCTGGGCGAAGCTCCGTCTTGTCACTGATATCCCGCGCAGCGCTTATGCT
GAGCCTGAGGAAGTGACTGCGGATCAGATCGAAAGCACAGCGGCGTCGGC
GCATGCGGACGATATGGCACGGGAGACTGTTGCCATGCCTGAAAGCTCAC
GCGAGAAACACGTCCGTTCGATGACCTTCATTCTCTGTATGGGCATGCTG
GCAGGGGTCCTGATCTGGGCGAAGCTCCGTCTTGTCACTGATATCCCGCG
CAGCGCTTATGCTGAGCCTGAGGAAGTGACTGCGGATCAGATCGAAAGCA
CAGCGGCGTCGGCGCATGCGGACGAT
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