mRNA_M-pyrifera_M_contig122764.4672.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A353QZ50_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353QZ50_9GAMM) HSP 1 Score: 143 bits (361), Expect = 5.300e-40 Identity = 74/177 (41.81%), Postives = 111/177 (62.71%), Query Frame = 1
Query: 4 LPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYYFQPQ---ERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
+PG+ V V+D ++ F+ YM+T +ELL P HDI+GEG L G+ D+G + PPTL++ +Y PQ + + P+IG GVN T +++ QA +A++G T +++D+S G+AV +G D+ ++D F LWYVDI +A+LKT G L DVD+DP V M G G+RF
Sbjct: 37 IPGSGVEVQDGISLGFSVTYMVTPQIGVELLAALPFKHDIKGEGSLNGV---DIGRIKHLPPTLTLQWY--PQLGVDWVQPYIGAGVNYTTFFDEQADGDLEAIVGK-TKISLDDSWGYAVELGADWAVSDNCFINTSLWYVDISTDATLKTAGAGTLKTDVDIDPLVFMLGVGMRF 207
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A2S7K8S6_9PROT (Uncharacterized protein n=1 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K8S6_9PROT) HSP 1 Score: 133 bits (334), Expect = 8.140e-36 Identity = 74/176 (42.05%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 1 GLPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLN-IDVDVDPRVAMFGFGVRF 525
G PG +V VE++V Y LTN+ EL+ + + HD++G G L GLG VGD+ PPTL++ Y+F P+ ++ P+ G GVN T +++ AS +GP T+L++D+S+G A +GLDY +NDR+F + Y+ ID A+L T G +N +DVD+DP VA G G+RF
Sbjct: 48 GFPGGSVNVENAVVPELDFTYFLTNNIGAELI-LATSPHDLQGTGTLSGLG--KVGDVMALPPTLTLQYHFNPEGKIRPYAGVGVNWTIFYSEDASDSLVNAIGP-TNLSLDDSVGVAYQVGLDYALNDRWFVNFDVKYIQIDTTATLNTG--GAINTVDVDLDPIVAGVGIGMRF 217
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A1F3A8E2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 TaxID=1797224 RepID=A0A1F3A8E2_9PROT) HSP 1 Score: 132 bits (332), Expect = 1.760e-35 Identity = 69/175 (39.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 4 LPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLN-IDVDVDPRVAMFGFGVRF 525
+P +V VED++ Y TN+ A EL+ + + HDI G G L GL +++ D PPTL++ Y+F P ++ P++G GVN T +++ + A LG TD+++D+S GWAV G+D+DI +R F + Y+DID A+L T G +N +DV +DP V GFG+RF
Sbjct: 51 VPTGSVTVEDAIVPELDFTYFFTNNIAAELI-LATSPHDISGAGALSGL--NEIADTMALPPTLTLQYHFMPNAKIRPYVGAGVNWTIFYSEDSKASLDTALGGATDVSLDDSFGWAVQAGIDFDITERVFLNLDVKYIDIDTTATLDTA--GSINTVDVQIDPIVFGVGFGMRF 220
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A251X7Q3_9GAMM (Uncharacterized protein n=2 Tax=Thioflexithrix psekupsensis TaxID=1570016 RepID=A0A251X7Q3_9GAMM) HSP 1 Score: 130 bits (327), Expect = 1.260e-34 Identity = 62/175 (35.43%), Postives = 103/175 (58.86%), Query Frame = 1
Query: 4 LPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGI-LPGLGVSDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
+P V V+ + T YM+T++F +ELL P H + +G L L ++ + PP+L + Y+F PQ ++ P++GFG N T +++ +++A LG DL +D+S+GWA G+D+D+ + +F A + Y+DI+ AS K+ ALG + +DVD++P V G G RF
Sbjct: 55 VPATDVSVDSAFTLDLDITYMITSNFGVELLLDIPTKHSVSSKGATLKSLAPGEILSARVLPPSLLLQYHFLPQGQIRPYVGFGANYTLFFDEESTASLNTGLGGVKDLELDSSVGWAAQAGVDFDMGNDWFLNADVKYIDINTTASFKSGALGNVEVDVDINPWVLGLGVGRRF 229
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A1Y5FKW2_9GAMM (Outer membrane protein OmpW n=1 Tax=Gammaproteobacteria bacterium 53_120_T64 TaxID=1856295 RepID=A0A1Y5FKW2_9GAMM) HSP 1 Score: 129 bits (324), Expect = 3.370e-34 Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 10 GATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYY-FQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
G VGV+ T YMLT+H I LL P HDI+ G+ GL D GD PPTL++ Y+ +P P++G GVN T +++ + +A LG DL +D+SIG AV +G DY I++ + A +WY+DID EA K + ++ DVD+DP V M G G +F
Sbjct: 61 GTGVGVDGDEQLGLTGTYMLTSHLGIGLLAATPFEHDIKANGL--GL---DAGDSKQLPPTLTLQYFPMEPSSAFQPYVGIGVNYTAFFDEGVDSDLEAFLGESGDLELDDSIGLAVQVGFDYAIDEHWLLNASVWYIDIDTEADFKFDTV-RIKADVDIDPWVYMVGVGYKF 227
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A1G3E7J4_9GAMM (Outer membrane protein OmpW n=1 Tax=Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 TaxID=1802009 RepID=A0A1G3E7J4_9GAMM) HSP 1 Score: 127 bits (320), Expect = 1.520e-33 Identity = 67/181 (37.02%), Postives = 98/181 (54.14%), Query Frame = 1
Query: 4 LPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGV------SDVGDLDIFPPTLSVNYY-FQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
+ G + GV T YM+T+H IELL P NHDI +GI LG D+ PPTLS+ YY + P++G G+N T +++ + + KA ++L++DNS+G A +G DY + D A +WY+DID A+ +ALG++ +DVDVDP V M G G +F
Sbjct: 54 IDGTSAGVNSDTQLGLTGTYMITDHVGIELLAATPFNHDISVKGIDAALGTPAGTIDGSFADVKQLPPTLSLQYYPMEASSAFQPYVGAGLNYTIFFDDNLTGRQKA--NGFSNLDLDNSVGLAFQVGTDYMLTDNILVNAAVWYIDIDTTATADHSALGKVKVDVDVDPFVYMVGLGYKF 232
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A219B2B6_9SPHN (Uncharacterized protein n=1 Tax=Pacificimonas flava TaxID=1234595 RepID=A0A219B2B6_9SPHN) HSP 1 Score: 127 bits (319), Expect = 1.620e-33 Identity = 65/173 (37.57%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 7 PGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEG-EGILPGLGVSDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVR 522
PG TV + D+V F YM T++ IEL+ H +G G+ GLG D+ + + PPT+++ Y+F P ++ P++G G+N T++W+ +A +GP T + + +S GWA+ G+D D+N+RFF Y+D++ + L TTA G IDVDV+P V GFG+R
Sbjct: 52 PGETVSLTDAVAPEFDLTYMATDNVGIELIAA-TTKHQADGVTGVTGGLG--DLVETWVLPPTVTLQYHFAPNSKVRPYVGAGLNYTFFWDEEAQDPLTNAVGP-TKVTLSDSFGWALQAGVDIDLNERFFLNLDAKYIDMNTDVELDTTAAGMQTIDVDVNPFVFGVGFGIR 220
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: UPI0016690956 (outer membrane beta-barrel protein n=1 Tax=Marinicella pacifica TaxID=1171543 RepID=UPI0016690956) HSP 1 Score: 127 bits (318), Expect = 2.350e-33 Identity = 65/177 (36.72%), Postives = 107/177 (60.45%), Query Frame = 1
Query: 4 LPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGV---SDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
+PG +V V+D+ + + GYM+++H+AIELL + H + G L LGV +DV D ++ PPT+ + Y F+P + P+ G G N T ++N + S + VLG +L++D+S GWA G+D+++++ + + Y+DI+ EA+ T ALG +DVD++P V GFG F
Sbjct: 49 VPGTSVSVDDNYSLDISIGYMISDHWAIELLADLSSKHTVSAHG-LSALGVPDGTDVVDTNVLPPTVFLQYQFRPTASVRPYFGVGANYTHFFNEELSGPAQEVLG-AENLDLDSSFGWAAQFGIDWELSNNWSFNMDVKYIDINTEATFNT-ALGSAAVDVDINPTVIGIGFGKTF 222
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A3B8X172_9GAMM (OmpW family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3B8X172_9GAMM) HSP 1 Score: 126 bits (317), Expect = 3.770e-33 Identity = 63/172 (36.63%), Postives = 102/172 (59.30%), Query Frame = 1
Query: 10 GATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYYFQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPGTDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASLKTTALGQLNIDVDVDPRVAMFGFGVRF 525
G G++ V YMLT H+ +EL+ + + HD++ +G L GLG ++ D PPTL++ Y+F P ++ P+ G G+N T +++ AS K G ++++D SIG A +G+D + D +F + Y+D++ +AS+ TTALG+L IDVD+DP V G G +F
Sbjct: 59 GTKAGLDSDVVPELDFTYMLTPHWGLELI-LASSEHDVKAKGALSGLG--NIIDSRTLPPTLTLQYHFLPDNKIQPYAGIGINYTHFFSEDASTSLKTAAGGRANVDLDPSIGIAFQVGMDVALQDDWFINFDVKYIDMETDASISTTALGKLKIDVDIDPWVYGIGIGKKF 227
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Match: A0A1G8MP13_9PSED (Outer membrane protein n=6 Tax=Pseudomonas TaxID=286 RepID=A0A1G8MP13_9PSED) HSP 1 Score: 126 bits (316), Expect = 5.470e-33 Identity = 67/178 (37.64%), Postives = 98/178 (55.06%), Query Frame = 1
Query: 7 PGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLGVSDVGDLDIFPPTLSVNYY-FQPQERLSPHIGFGVNSTWYWNTQASAQTKAVLGPG-TDLNIDNSIGWAVNIGLDYDINDRFFATAGLWYVDIDAEASL---KTTALGQLNIDVDVDPRVAMFGFGVRF 525
PG ++ T YMLT+H +ELL P H + +G+ GL + D+ PPTLS+ YY + + P+ G GVN TW+++ S+ K G G DL+IDNS GWA +G+DY + D A +WYVDI+ +A+L ++ + ++VDVDP V M GFG +F
Sbjct: 55 PGTKATLDSDTQLGLTFAYMLTDHVGVELLASTPFQHTVAIKGLGAGLD-GKLADVKQLPPTLSLQYYPMEANSKFQPYAGLGVNYTWFYDENLSSDRK---GQGMNDLHIDNSWGWAGQVGMDYMLTDHVMVNAAVWYVDINTQATLDGPSALSMARTKVNVDVDPWVYMLGFGYKF 228 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122764.4672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig122764.4672.1 >prot_M-pyrifera_M_contig122764.4672.1 ID=prot_M-pyrifera_M_contig122764.4672.1|Name=mRNA_M-pyrifera_M_contig122764.4672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp GLPGATVGVEDSVTFAFTAGYMLTNHFAIELLGIWPANHDIEGEGILPGLback to top mRNA from alignment at M-pyrifera_M_contig122764:2..526+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig122764.4672.1 ID=mRNA_M-pyrifera_M_contig122764.4672.1|Name=mRNA_M-pyrifera_M_contig122764.4672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig122764:2..526+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig122764:2..526+ >mRNA_M-pyrifera_M_contig122764.4672.1 ID=mRNA_M-pyrifera_M_contig122764.4672.1|Name=mRNA_M-pyrifera_M_contig122764.4672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig122764:2..526+ (Macrocystis pyrifera P11B4 male)back to top |