mRNA_M-pyrifera_M_contig12267.4659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12267.4659.1
Unique NamemRNA_M-pyrifera_M_contig12267.4659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.640e-67
Identity = 155/435 (35.63%), Postives = 228/435 (52.41%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTS--SVEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDV-VSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGK-------NE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPERLIN 1351
            KTFTE  +A+ LR + K+VL VASTG AAL L GG T+HS  +LP+ D+     V N+ ++ +RA ++++++L I DE  +  +   +A + T +DL   D PF  +TIL SGDWRQ   +++     + V+ AF  S + + + RFRLN S   K           +  G    V + DG+    L     N D   T +   +   TDF++L+  VYPD  L      +N R IL  TN +ID  +  I D  PG      S+D +I+D +N      S E+LN + V G PPH+L LK   L     N+ F  GLVNG+       +  S V    LL     R  +L+ + +    + K+    +  T   FP+   Y+MTINK +GQTL ++GLDLR+    HGQLY ALSR+  R +++CL+    +I+
Sbjct:   10 KTFTEKCLASRLRGEDKVVLIVASTGIAALQLPGGWTAHSMFKLPMDDNLTPSCVCNISSQTQRAELIRQSNLIIWDELPMTHRYCVEALDRTLKDLMAVDQPFGGKTILFSGDWRQTGPIVKNAAPTDTVDAAFISSPLWKGVMRFRLNKSQRDKEDPQYASFVRSIGEGSRPTVTMSDGSKLTPLN----NHDNEDTANHFQLRYTTDFDELLRFVYPD--LSQQSRIWNTRAILATTNHSIDRSNDTISDNRPGNYVSFFSSDSLISDEKNRRTAFASPEHLNQLNVQGIPPHELKLKTDTLALITRNLNFSEGLVNGQKCVVLAVSASSRVLQVQLLTEERPRPIVLIPRINF---QGKVGRNGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIID 435          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 6.350e-61
Identity = 156/445 (35.06%), Postives = 223/445 (50.11%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSME------------TKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSS-----VEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*-----SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPERL 1345
            KT+TE  +   LRS  KLVLCVASTG A L L GG T+HS  +LP+ D  V G++ N+ AE +RA VL++  L + DE  +  + + +A NLT QDL  +D     +T+L SGD RQ+   ++ G     ++ +   S +  H+QR RL +S              +K        C     G        DG  AV L + +  +  F+T S      ++    FE+LI  VY D +L A+   +  R IL  TN  ID I+  + D +PG      S D +   H+N  D V+   LN++ V G PPH L LK+  +     N+ F  GLVNG+        + + H  LL   S    +   + +A V +     +  S       VC  YA+TINK +GQTL ++GLDLR++   HGQLY ALSR   R +++CL  P RL
Sbjct:  325 KTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEDKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPFIKHGGPAGTIDASLISSPLWPHVQRMRLTISQRHRKNAAYVRCFCSKCRYVGMSVCXXXGIGTQAHTTANDGIDAVPLAYRLFMK--FRTDSPKDQFVIDNTDSFEELIDFVYQD-ILTADPTDFKARAILSSTNATIDLINSHVLDILPGDMLTAYSCDTV-DPHDNNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGR---NGIAFSRLQLPLRVC--YALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARL 760          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.770e-57
Identity = 143/428 (33.41%), Postives = 208/428 (48.60%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSVEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*-----SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPERL 1345
            KT+TE  +   LRS  KLVLCVASTG A L L GG T+HS  +LP+ +  V G++ N+ AE +RA VL++  L + DE  +  + + +A NLT QDL  +D     +T+L SGD RQ+  V++ G   E ++ +   S +  H+QR RL +S  T+  +H+                  DG  AV L +     D  +    ++    FE+LI  VY D +L A+   +  R I                                +  H+N  D V+   LN++ V G PPH L LK+  +     N+ F  GLVNG+        + + H  LL   S    +   + +A V +     +  S       VC  YA+TINK +GQTL ++GLDLR++   HGQLY ALSR   R +++CL  P RL
Sbjct:   10 KTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPHVQRMRLTISQRTQ--AHTTTD---------------DGIDAVPLAYIHEVPDSPKDQFFIDNTDSFEELIDFVYQD-ILTADPTDFKARAIC-------------------------------LDPHDNNLDFVATADLNAIDVSGVPPHALELKLNCMVMITRNLNFKQGLVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGR---NGIAFSRLQLPLRVC--YALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARL 383          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A6P8Y9Z8_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y9Z8_THRPL)

HSP 1 Score: 184 bits (466), Expect = 8.370e-47
Identity = 132/428 (30.84%), Postives = 212/428 (49.53%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSV-FNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVG-TQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSVEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEP-VVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPERLIN 1351
            KT     I ++LR++GK+VLCVAS+G AAL + GG T+H+  +LP+  D  DG+  +N+    +RA +++ +SL + DE  +  K   +  + + +DL  +D PF  + +LCSGD+RQ   V++   T  ++++ +   S +   ++ F L     T+      K    +  G           P V    +    +       +   TD + LI  +YP+H+L +  +    R IL P NVN+  I++ + D + G  H + S D    + ++ P    V+ LN     G PPH L LK+GA+     N+  D GLVNG     +     L+  R    +           KF + P   L+     FP+   Y M+++K +GQT+  VG+DLR E   HGQLY ALSR   R+N+  LV P R+++
Sbjct:  878 KTAVLKVITSYLRARGKVVLCVASSGIAALNMDGGTTAHNMFRLPL--DLKDGTATWNLTNGSQRAELIRASSLIMFDEAPMMHKHILELLDRSLKDLMGNDHPFGGKILLCSGDFRQTPPVVESARTPNDVIDASIKSSCLWGRMKIFSLKTPQRTRNDPDYSKFLLDIGNGT---------APEVPFTTANDKREDLVALPGIGSVTDSKALIDMIYPEHIL-SQPDECAKRAILAPLNVNVSEINNIVLDMLIGPIHEMLSYDSTEKETDD-PLEADVDLLNQASAKGVPPHKLRLKVGAVCLITRNLNVDQGLVNGTKVIVQSISPNLVRVRKATSSESFG-IPRITFKFPMLPGSPLTVVRRQFPLQLAYGMSVHKSQGQTIDLVGVDLRTECFTHGQLYVALSRVRSRENIKLLVPPARVLH 1291          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: UPI000DC13776 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13776)

HSP 1 Score: 171 bits (432), Expect = 5.600e-44
Identity = 135/432 (31.25%), Postives = 207/432 (47.92%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWR-----LARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSVEGATDFEQLILSVYPDHLLE-ANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHE--NMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*F-----PVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVE 1333
            KTF    I   +RSQ K+ L VAS+G AA +L GG T+HST +LP+       ++ N+K     A VL+++S+ I DE+    K + +A N T QDL  ++  +    +L SGD+RQ   V+   T  + +      S + + ++  R+ ++M  ++ +    Q +      +  GKIEL      T  + L       D F T        D  ++I S++PD      NH   + R IL P NV++D I+      +PG      S D ++ ++E  N P    +E+LNS+ +PG PPH+L LKIG+    + N+K    L NG     +     +L +      +L  KF   V      P++ S +   F     P+   +AM+INK +GQT+   GLDL      HGQLY A SR     NL  L +
Sbjct:   96 KTFLISLILAKIRSQQKIALAVASSGIAATLLDGGRTAHSTFKLPLDVHNKPDAMCNIKKNSGIAAVLRKSSIIIWDEYTKAHKYSLEALNRTMQDLNSNNKLYGGAILLLSGDFRQTLPVIPRSTFADEINACLKQSFLWRSVETLRMTINMRVQLQNDPSAQLFSEQLLDIGNGKIEL---QPNTQYIKLP------DNFCTV-----VQDKNEMIQSIFPDIQNNYLNHEWLSQRAILAPKNVDVDEINFQKQQLLPGDLMSFKSIDTVVDENESVNFP----IEFLNSLDIPGMPPHNLRLKIGSPIILLRNLKLTQ-LCNGTRLVIKKITGNILET-----TILSGKFKGKVVLLPRIPMIPSDSTIPFKRLQFPIRLAFAMSINKSQGQTMSICGLDLENPCFSHGQLYVACSRVGKPSNLFVLAK 503          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A317YKU2_MAIZE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A317YKU2_MAIZE)

HSP 1 Score: 172 bits (437), Expect = 8.170e-44
Identity = 139/443 (31.38%), Postives = 211/443 (47.63%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSD------LPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSM---ETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSS----VEGATDFEQLILSVYPDHLLEANHNTY-NDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPD---VVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*-----SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPE 1339
            KTF   TI   LRS+ K+VL VAS+G A+L+L  G T+HS  ++P   D  D S  NV      A +++ +SL I DE  +  +   +A + T +D+          LPF  + ++  GD+RQ+  V++ G++  +V  +   S++ +H+   RL  +M   +  +   ++ +    A+  + +    DGT     + S                VEG      L+  VYPD LL     TY + R I+ P N  ID I+ +I   +PG      S D I    EN+PD   +   E+LNS+     P H L LK GA+   + N+  + GL NG           + H   L   +  + +L+ +     +  K  P  L      FPV   YAMTINK +GQTL RVG+ L+     HGQLY A+SR+  R+ L+ L+E E
Sbjct:  204 KTFLWNTIIARLRSEKKIVLAVASSGVASLLLPKGRTAHSRFKIPF--DVNDASTCNVNRGTMLAELIQVSSLIIWDEAPMTHRWCFEALDKTMRDILSEHTPSNALLPFGGKPVVLGGDFRQILPVVRKGSRSSIVNASITNSDLWRHVVLLRLRTNMRLFDPSLQVDARNELDMFAKWVLSV---GDGTLPAERRASEREATWITVPEDLLLRVEGDK-VAALVSKVYPDFLLNYRDPTYLSSRAIVCPNNATIDDINSYILSLVPGDTIQYLSCDVIAKSSENIPDFDVLYPTEFLNSIDANNFPTHKLELKKGAIVMLLRNLNQNKGLCNGTRLLVTQLGQRILHCVALTGSNVGEEVLIPRIALNTTDVKW-PFTLQRRQ--FPVRLCYAMTINKSQGQTLSRVGIYLKRPVFTHGQLYVAVSRSTSRNGLIILIENE 637          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A1W4VF09_DROFC (ATP-dependent DNA helicase n=8 Tax=Endopterygota TaxID=33392 RepID=A0A1W4VF09_DROFC)

HSP 1 Score: 167 bits (423), Expect = 2.760e-43
Identity = 135/430 (31.40%), Postives = 205/430 (47.67%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWR-----LARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSVEGATDFEQLILSVYPDHLLE-ANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*F-----PVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVE 1333
            KTF    I   +RSQ K+ L VAS+G AA +L GG T+HST +LP+       ++ N+K     A VL+++S+ I DE  +  K + +A   T QDL  ++  F    +L SGD+ Q   V+   T  + +      S + + ++  RL ++M  ++ +    Q +      +  GKIEL      T  + L       + F T        D  +LI S++PD      NHN  + R IL   NV++D I+  I   IPG      S D ++ + E++    + E+LNS+ +PG PPH+L LKIG+    + N+     L NG     +     +L +      +L  KF   V      P++ S +   F     P+   +AMTINK +GQT+   GLDL +    HGQLY A SR     NL  L +
Sbjct:   22 KTFLISLILAEIRSQQKIALAVASSGVAATLLDGGRTAHSTFKLPLDIHHKPDAMCNIKKNSGIAAVLRKSSIIIWDECTMAHKYSLEALQRTMQDLNSNNNLFGGTILLLSGDFYQTLPVIPRSTFADEINACLKQSFLWRSVETLRLTINMRVQLQNDPSAQIFSEKLLDIGNGKIEL---QPNTQCIKLP------ENFCTVLQ-----DKNELIQSIFPDIQNNYLNHNWLSHRAILTSKNVDVDEINLQIQQFIPGDLMSFKSIDTVVNEDESVN--FTTEFLNSLDLPGMPPHNLQLKIGSPIILLRNLN-PPQLCNGTRLIIKKITGNILEA-----TILAGKFKGKVVLLPRIPIIPSDSTIPFKRLQFPIRLAFAMTINKSQGQTMSICGLDLESPCFSHGQLYVACSRVGKPSNLFVLAK 429          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A6P8ZK23_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZK23_THRPL)

HSP 1 Score: 173 bits (438), Expect = 3.110e-43
Identity = 133/428 (31.07%), Postives = 215/428 (50.23%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDG-SVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSDLPFACQTILCSGDWRQVDHVL-QVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSVEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKL---EPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPERL 1345
            KT     IA++LRS+GK+ LCVAS+G AAL L GG T+H+  +LP+  D  DG   +N+    +RA +++ A+L I DE  +  +   +  + + +DL  +DLPF  + ILCSGD+RQ+  V+ +     ++V  +   S++ +  + F+L V   T+ +    +    +  G +      +G            ++      S+   T   QLI  +YP H+L +N +    R IL   N NI  I+  I   + G  H L S D++  + ++  DV   E L+  +  G P H L LKIGA+     N+  + GLVNG     E     ++  R    N   +       KF +    P++++     FP+   YAM+ +K +GQT+ +VG+DLR +   HGQLY  LSR    D+++ LV  +R+
Sbjct:  527 KTQLLKVIASYLRSKGKVSLCVASSGIAALNLEGGTTAHAMFRLPL--DLGDGLGNWNISNGTQRAQLVRAATLIIFDEAPMMHRHGFEMLDRSLKDLMGNDLPFGGKIILCSGDFRQIAPVVPRARCPSDVVAVSLRSSHLWEFFKVFKLTVPQRTRGSDDYSQYLLHVGNGTLPETTFGEGR----------EQEKLVPLRSLRHMTTLHQLIDEIYPGHIL-SNPDAAAQRAILATLNTNIRAINDVILHSLHGTLHELLSYDEVDKEADDGFDV-DEETLHQTRAKGVPDHILKLKIGAVCFITRNLNIEEGLVNGTKVVVEAVSPRIVRVRKAGGNETFA-IPRITFKFPIVDGAPLMINRRQ--FPLQLAYAMSFHKSQGQTINKVGVDLRTDCFTHGQLYVGLSRVRSPDDIVVLVPHDRI 937          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A8I6WT09_HORVV (ATP-dependent DNA helicase n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WT09_HORVV)

HSP 1 Score: 169 bits (428), Expect = 4.180e-43
Identity = 134/445 (30.11%), Postives = 218/445 (48.99%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCK------SDLPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSSV---EGATDFEQLILSVYPDHLLEANHNTY-NDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTD---KIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FP-----------VCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPE 1339
            KT+    I T LRS+GK+VL VAS G AAL+L GG T+HS  ++P+  +  + S   +K     A +LK+ SL +  E  + +K   +A + + +D+ +      ++ PF   T++  GD+RQ+  V+  G + ++V  +   S + +H + F L  +M  K  S    Q  ++A     ++ + DG        S   ED  +    +   +G    EQ++ S+YP+ L +     Y  +R IL P N  +  I+  I  +I G      S D   K  T+   M ++   E+LN++  PG P H L LK+G     + NI   +GL NG         +   +   Y +  +++  H    K  +  +++S +DS +P           VCF  AMTINK +GQ+L +VG+ L  +  CHGQLY ALSR   ++ L  L++ E
Sbjct:  117 KTYLWKAITTKLRSEGKIVLAVASCGIAALLLQGGRTAHSRFRIPL--NITEESTCEIKQGSHLAELLKKTSLILWGEAPMANKHCFEALDKSLRDILRFTNENSNEKPFGGMTVILGGDFRQILPVITKGRREQIVNASIKRSYLWKHFEIFELTQNMRLKCLSDDPIQKQKVAEFAEWILQIGDGKTT-----SDEGEDWIKIPKDLLLEKGENRKEQIVKSIYPNLLQKYCERDYLEERAILCPRNDTVKEINDHIMSQIQGEDVTYLSLDTVCKATTNTNIMMNMQPTEFLNTLTSPGIPDHKLTLKVGLPVMLLRNINQAAGLCNGTTM------TITQLGNKYIETQIITGTHVG-DKVYIPRIIMSPSDSKWPFVLKRRQYPLSVCF--AMTINKSQGQSLNKVGIYLPKQVFCHGQLYVALSRVTNKEGLKVLIDDE 545          
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Match: A0A3L6EV34_MAIZE (ATP-dependent DNA helicase n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6EV34_MAIZE)

HSP 1 Score: 166 bits (421), Expect = 1.550e-42
Identity = 141/443 (31.83%), Postives = 211/443 (47.63%), Query Frame = 2
Query:   77 KTFTECTIATHLRSQGKLVLCVASTGTAALILLGGLTSHSTSQLPVGDDAVDGSVFNVKAECERAVVLKRASLNI*DEFVVFSKCAPDAQNLTRQDLCKSD------LPFACQTILCSGDWRQVDHVLQVGTQYEMVEHAFFFSNM*QHIQRFRLNVSMETKMTSHSQKQCWRLARGKIELVFLPDGT-PAV--ALQHSVT----NEDGFQTTSSVEGATDFEQLILSVYPDHLLEANHNTY-NDRGILVPTNVNIDHIHHFIPDKIPGRGHHLPSTDKIITDHENMPD---VVSVEYLNSVQVPGTPPHDLHLKIGALFAFVGNIKFDSGLVNGKNE*-----SEVFHSGLLMSRSYRKNLLLSKFHAYVSKFKLEPVVLSSTDS*FPVCF*YAMTINKLRGQTLKRVGLDLRAEEVCHGQLYAALSRTICRDNLLCLVEPE 1339
            KTF   TI   LRS+ K+VL VAS+G A+L+L  G T+HS  ++P   D  D S  NV      A +++ +SL I DE  +  +   +A + T +D+          LPF  + ++  GD+RQ+  V++ G++  +V  +   SN+  H+   RL  +M     S        L      ++ + DGT PA   A +H  T     ED       VEG      L+  VYPD LL     TY +   I+ P N  ++ +++++   +PG      S D I    E++PD   +   E+LNS+     P H L LK GA+   + N+  + GL NG           + H   L   +  + +L+ +     +  K  P  L      FPV   YAMTINK  GQTL RVG+ L+     HGQLY A+SR+  R+ L+ L+E E
Sbjct:   43 KTFLWNTIIARLRSEKKIVLAVASSGVASLLLPKGHTAHSRFKIPF--DVNDASTCNVNRGTMLAELIQVSSLIIWDEAPMTHRWCFEALDKTMRDILSEHTPSNALLPFGGKPVVLGGDFRQILPVVRKGSRSSIVNASITNSNLWWHVVLLRLRTNMRLFDPSLQVDVRDELDMFAKWVLSVGDGTLPAERRASEHEATWITIPED---LLLRVEGDK-VAALVPKVYPDFLLNYRDPTYLSSCSIVCPNNATVNDVNNYVLSLVPGDTIQYLSCDVIAKSSEHIPDFDVLYPTEFLNSIDANNFPTHKLELKKGAIVMLLRNLNQNKGLYNGTRLLVTQLGQRILHCVALTGSNVGEEVLIPRIALNTTDVKW-PFTLQRRQ--FPVRLCYAMTINKSHGQTLSRVGIYLKGPVFTHGQLYVAVSRSTSRNGLIILIENE 476          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12267.4659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9C5_9PHAE1.640e-6735.63ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE6.350e-6135.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JNR7_9PHAE1.770e-5733.41ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6P8Y9Z8_THRPL8.370e-4730.84ATP-dependent DNA helicase n=1 Tax=Thrips palmi Ta... [more]
UPI000DC137765.600e-4431.25ATP-dependent DNA helicase PIF1-like n=2 Tax=Melan... [more]
A0A317YKU2_MAIZE8.170e-4431.38ATP-dependent DNA helicase (Fragment) n=1 Tax=Zea ... [more]
A0A1W4VF09_DROFC2.760e-4331.40ATP-dependent DNA helicase n=8 Tax=Endopterygota T... [more]
A0A6P8ZK23_THRPL3.110e-4331.07ATP-dependent DNA helicase n=1 Tax=Thrips palmi Ta... [more]
A0A8I6WT09_HORVV4.180e-4330.11ATP-dependent DNA helicase n=2 Tax=Hordeum vulgare... [more]
A0A3L6EV34_MAIZE1.550e-4231.83ATP-dependent DNA helicase n=1 Tax=Zea mays TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12267contigM-pyrifera_M_contig12267:2799..4152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size1354
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12267.4659.1prot_M-pyrifera_M_contig12267.4659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12267 3111..3620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.667427-UTR-M-pyrifera_M_contig12267:2798..31101622815745.667427-UTR-M-pyrifera_M_contig12267:2798..3110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12267 2799..3110 -
1692277549.5101948-UTR-M-pyrifera_M_contig12267:2798..31101692277549.5101948-UTR-M-pyrifera_M_contig12267:2798..3110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12267 2799..3110 -
1622815745.692033-UTR-M-pyrifera_M_contig12267:3620..41521622815745.692033-UTR-M-pyrifera_M_contig12267:3620..4152Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12267 3621..4152 -
1692277549.5434225-UTR-M-pyrifera_M_contig12267:3620..41521692277549.5434225-UTR-M-pyrifera_M_contig12267:3620..4152Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12267 3621..4152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.6789382-CDS-M-pyrifera_M_contig12267:3110..36201622815745.6789382-CDS-M-pyrifera_M_contig12267:3110..3620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12267 3111..3620 -
1692277549.5320811-CDS-M-pyrifera_M_contig12267:3110..36201692277549.5320811-CDS-M-pyrifera_M_contig12267:3110..3620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12267 3111..3620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12267.4659.1

>prot_M-pyrifera_M_contig12267.4659.1 ID=prot_M-pyrifera_M_contig12267.4659.1|Name=mRNA_M-pyrifera_M_contig12267.4659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
METKMTSHSQKQCWRLARGKIELVFLPDGTPAVALQHSVTNEDGFQTTSS
VEGATDFEQLILSVYPDHLLEANHNTYNDRGILVPTNVNIDHIHHFIPDK
IPGRGHHLPSTDKIITDHENMPDVVSVEYLNSVQVPGTPPHDLHLKIGAL
FAFVGNIKFDSGLVNGKNE*
back to top

mRNA from alignment at M-pyrifera_M_contig12267:2799..4152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12267.4659.1 ID=mRNA_M-pyrifera_M_contig12267.4659.1|Name=mRNA_M-pyrifera_M_contig12267.4659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1354bp|location=Sequence derived from alignment at M-pyrifera_M_contig12267:2799..4152- (Macrocystis pyrifera P11B4 male)
TTCGACACCATCGCTAAACATGCTCTTCAGGATTTGGGTGGCCTTTACAT GGTAGATGCTCCTGCCGGAATAAGATAAAACTTTCACAGAATGCACCATC GCAACCCACCTACGTTCTCAAGGAAAATTAGTGCTTTGTGTAGCCTCCAC AGGCACTGCCGCCCTCATACTGCTTGGTGGTCTCACTTCCCATTCCACGT CACAACTGCCGGTTGGTGATGATGCTGTTGATGGAAGTGTCTTCAACGTC AAAGCTGAATGTGAGCGTGCCGTTGTCCTCAAGCGAGCTTCGCTCAATAT CTGAGATGAATTTGTTGTGTTTTCAAAGTGTGCACCTGATGCACAGAACT TAACACGGCAAGACCTTTGCAAGAGTGACTTGCCATTCGCCTGCCAAACT ATTTTATGTAGCGGAGACTGGAGACAGGTTGACCATGTCCTCCAAGTTGG CACTCAATATGAAATGGTGGAACACGCCTTCTTTTTCTCTAATATGTGAC AACATATCCAACGCTTCCGTCTAAATGTGTCAATGGAGACAAAGATGACG TCCCATTCGCAAAAACAGTGCTGGCGGTTGGCAAGGGGGAAAATAGAGCT TGTTTTTCTACCAGATGGTACTCCTGCGGTCGCTTTGCAACACAGCGTGA CAAACGAAGACGGTTTTCAAACCACATCCTCTGTCGAAGGAGCCACAGAC TTTGAACAGCTCATCCTCAGTGTATACCCGGATCATCTCTTAGAAGCCAA CCACAACACCTACAATGACCGGGGCATTCTGGTTCCCACCAATGTCAACA TCGACCATATCCACCACTTTATCCCCGACAAAATTCCAGGACGAGGCCAT CACCTGCCAAGTACAGATAAAATCATAACCGACCACGAAAACATGCCAGA CGTCGTTTCGGTTGAGTACTTAAACAGTGTACAAGTGCCTGGCACTCCTC CTCATGACCTGCACCTCAAGATTGGAGCTTTGTTTGCTTTTGTTGGCAAC ATAAAATTCGACAGTGGTCTCGTCAACGGGAAAAATGAGTAATCAGAGGT ATTTCACAGCGGGTTATTGATGTCGAGGTCATATCGGAAGAATCTCCTAT TGTCAAAATTCCACGCATATGTTTCGAAGTTCAAGTTGGAGCCCGTGGTA TTGAGTTCTACCGATTCATAATTCCCTGTGTGTTTCTGATACGCTATGAC CATTAATAAATTACGAGGGCAAACGTTGAAAAGAGTAGGACTCGACCTCA GAGCCGAAGAGGTTTGCCATGGGCAACTGTATGCCGCTTTGAGTAGAACC ATCTGTCGGGACAACCTCCTATGCCTCGTCGAACCCGAACGGCTTATCAA CCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12267:2799..4152-

>mRNA_M-pyrifera_M_contig12267.4659.1 ID=mRNA_M-pyrifera_M_contig12267.4659.1|Name=mRNA_M-pyrifera_M_contig12267.4659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig12267:2799..4152- (Macrocystis pyrifera P11B4 male)
ATGGAGACAAAGATGACGTCCCATTCGCAAAAACAGTGCTGGCGGTTGGC
AAGGGGGAAAATAGAGCTTGTTTTTCTACCAGATGGTACTCCTGCGGTCG
CTTTGCAACACAGCGTGACAAACGAAGACGGTTTTCAAACCACATCCTCT
GTCGAAGGAGCCACAGACTTTGAACAGCTCATCCTCAGTGTATACCCGGA
TCATCTCTTAGAAGCCAACCACAACACCTACAATGACCGGGGCATTCTGG
TTCCCACCAATGTCAACATCGACCATATCCACCACTTTATCCCCGACAAA
ATTCCAGGACGAGGCCATCACCTGCCAAGTACAGATAAAATCATAACCGA
CCACGAAAACATGCCAGACGTCGTTTCGGTTGAGTACTTAAACAGTGTAC
AAGTGCCTGGCACTCCTCCTCATGACCTGCACCTCAAGATTGGAGCTTTG
TTTGCTTTTGTTGGCAACATAAAATTCGACAGTGGTCTCGTCAACGGGAA
AAATGAGTAAATGGAGACAAAGATGACGTCCCATTCGCAAAAACAGTGCT
GGCGGTTGGCAAGGGGGAAAATAGAGCTTGTTTTTCTACCAGATGGTACT
CCTGCGGTCGCTTTGCAACACAGCGTGACAAACGAAGACGGTTTTCAAAC
CACATCCTCTGTCGAAGGAGCCACAGACTTTGAACAGCTCATCCTCAGTG
TATACCCGGATCATCTCTTAGAAGCCAACCACAACACCTACAATGACCGG
GGCATTCTGGTTCCCACCAATGTCAACATCGACCATATCCACCACTTTAT
CCCCGACAAAATTCCAGGACGAGGCCATCACCTGCCAAGTACAGATAAAA
TCATAACCGACCACGAAAACATGCCAGACGTCGTTTCGGTTGAGTACTTA
AACAGTGTACAAGTGCCTGGCACTCCTCCTCATGACCTGCACCTCAAGAT
TGGAGCTTTGTTTGCTTTTGTTGGCAACATAAAATTCGACAGTGGTCTCG
TCAACGGGAAAAATGAGTAA
back to top