mRNA_M-pyrifera_M_contig122627.4658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122627.4658.1
Unique NamemRNA_M-pyrifera_M_contig122627.4658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: UPI001BB19D2B (uncharacterized protein LOC121411139 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB19D2B)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-8
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLERED-RVLRLFTLNFAVFGWILDLFLLPSLVARANQ 195
            ++SL  AYL+ +PP+GLFG  H+YL R    V + FT    V GW +DLF +P LV +AN+
Sbjct:  169 KISLIDAYLMWLPPMGLFGIHHFYLGRTRYAVFQTFTFGLNVIGWTVDLFRMPWLVRKANE 229          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: UPI001E1D2726 (uncharacterized protein LOC123557541 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2726)

HSP 1 Score: 59.7 bits (143), Expect = 1.720e-8
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDRVLRLFTLNFAVFG--WILDLFLLPSLVARA 189
            E SL  AY+L +PPLG+FGA H+YL    R+  ++T  F +FG  WI+DLF +P LV +A
Sbjct:  130 EKSLGTAYILALPPLGIFGAYHYYLGNV-RLGLVYTFTFGIFGIGWIVDLFRMPRLVRKA 188          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: R7TJ04_CAPTE (TM2 domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TJ04_CAPTE)

HSP 1 Score: 56.6 bits (135), Expect = 9.360e-8
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDR--VLRLFTLNFAVFGWILDLFLLPSLVARANQQ---RLESAR 216
               L  AY++ +PPLGLFG  H YL +  +  +L  FTL     GWI DLF +P LV RAN +   R+ES+R
Sbjct:   68 RTRLSSAYVMSIPPLGLFGG-HHYLMKNTKWGLLYTFTLGLLGCGWIADLFRMPVLVTRANTENKLRMESSR 138          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: UPI001BB212EA (uncharacterized protein LOC121419836 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB212EA)

HSP 1 Score: 57.0 bits (136), Expect = 1.500e-7
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYL---EREDRVLRLFT--LNFAVFGWILDLFLLPSLVARANQ 195
            E SL  AYL  +PP GLFG  H YL    + D    ++T  L F  FGW+ DLF +P LV RAN+
Sbjct:  150 ERSLVNAYLYAIPPWGLFGMHHMYLGTFRKNDAFSLIYTATLGFIGFGWLFDLFRIPILVRRANE 214          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: UPI001E1DBB7D (uncharacterized protein LOC123557543 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBB7D)

HSP 1 Score: 56.6 bits (135), Expect = 2.040e-7
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDRVLRLFTLNFAVFG--WILDLFLLPSLVARA 189
            E SL  AY+L +PPLG+FGA H+YL      L ++T  F +FG  WI+DLF +  LV +A
Sbjct:  130 EKSLGTAYILALPPLGIFGAYHYYLGNIKLGL-IYTFTFGIFGIGWIIDLFRMSKLVRKA 188          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: A0A6A7G919_9CRUS (Caffeoylshikimate esterase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G919_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 3.800e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   22 SLCVAYLLCVPPLGLFGAVHWYLEREDRVLR-LFTLNFAVFGWILDLFLLPSLVARAN 192
            SL +AY+L +PP GLFG  ++YL R+++    LFT      GWI+D F LPSL+  AN
Sbjct:   34 SLILAYILWLPPFGLFGFHNFYLNRKEQGFAFLFTGGLLGIGWIIDFFRLPSLLTTAN 91          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: A0A7M7LP26_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LP26_STRPU)

HSP 1 Score: 55.1 bits (131), Expect = 7.030e-7
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDRV-LRLFTLNFAVFGWILDLFLLPSLVARANQQ 198
            ++SL  AYL+ +PP GLFG  H+YL R        F+    V GW+ DL  +P LV +AN++
Sbjct:  166 KISLVDAYLMWLPPFGLFGTHHYYLGRTRYASFHSFSFGLNVVGWVFDLLRMPWLVRKANEE 227          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: A0A7M7ND29_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7ND29_STRPU)

HSP 1 Score: 55.1 bits (131), Expect = 7.160e-7
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLE--REDRVLRLF---TLNFAVFGWILDLFLLPSLVARANQ 195
            E S+  AYL  +PP GLFG  + YL   R++ V  L    TL F  FGW+ DLF +P LV RAN+
Sbjct:  144 ERSIVNAYLYSIPPWGLFGIHYMYLGTFRKNDVFHLIYTATLGFMGFGWLFDLFRIPILVRRANE 208          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: UPI001E1D305F (uncharacterized protein LOC123557542 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D305F)

HSP 1 Score: 54.3 bits (129), Expect = 1.330e-6
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDRVLRLFTLNFAVFG--WILDLFLLPSLV 180
            E SL  AY+L +PPLG+FGA ++YL      L ++T  F +FG  WI+DLF +P LV
Sbjct:  130 EKSLGTAYILALPPLGIFGAYYYYLGNVSLGL-VYTFTFGMFGIGWIVDLFRMPRLV 185          
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Match: A0A7M7ST02_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7ST02_STRPU)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 EVSLCVAYLLCVPPLGLFGAVHWYLEREDR-VLRLFTLNFAVFGWILDLFLLPSLVARAN 192
            ++SLC AY+L +PP+GL G   +YL R+   +    TL     GW+LD   LP++V +AN
Sbjct:  168 KISLCDAYMLWLPPIGLLGFYQYYLGRKRYGIFHTLTLGRCGLGWLLDFCRLPAMVRKAN 227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122627.4658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI001BB19D2B1.170e-847.54uncharacterized protein LOC121411139 n=2 Tax=Lytec... [more]
UPI001E1D27261.720e-850.00uncharacterized protein LOC123557541 n=1 Tax=Merce... [more]
R7TJ04_CAPTE9.360e-845.83TM2 domain-containing protein (Fragment) n=1 Tax=C... [more]
UPI001BB212EA1.500e-747.69uncharacterized protein LOC121419836 n=2 Tax=Lytec... [more]
UPI001E1DBB7D2.040e-748.33uncharacterized protein LOC123557543 n=1 Tax=Merce... [more]
A0A6A7G919_9CRUS3.800e-748.28Caffeoylshikimate esterase n=1 Tax=Hirondellea gig... [more]
A0A7M7LP26_STRPU7.030e-741.94Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A7M7ND29_STRPU7.160e-747.69Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001E1D305F1.330e-649.12uncharacterized protein LOC123557542 n=1 Tax=Merce... [more]
A0A7M7ST02_STRPU2.570e-641.67Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122627contigM-pyrifera_M_contig122627:92..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.6323159-CDS-M-pyrifera_M_contig122627:91..3461622815745.6323159-CDS-M-pyrifera_M_contig122627:91..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122627 92..346 +
1692277549.4900436-CDS-M-pyrifera_M_contig122627:91..3461692277549.4900436-CDS-M-pyrifera_M_contig122627:91..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122627 92..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122627.4658.1prot_M-pyrifera_M_contig122627.4658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122627 92..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122627.4658.1

>prot_M-pyrifera_M_contig122627.4658.1 ID=prot_M-pyrifera_M_contig122627.4658.1|Name=mRNA_M-pyrifera_M_contig122627.4658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
VPRPPEVSLCVAYLLCVPPLGLFGAVHWYLEREDRVLRLFTLNFAVFGWI
LDLFLLPSLVARANQQRLESARQMALDHERRKRRG
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mRNA from alignment at M-pyrifera_M_contig122627:92..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122627.4658.1 ID=mRNA_M-pyrifera_M_contig122627.4658.1|Name=mRNA_M-pyrifera_M_contig122627.4658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig122627:92..346+ (Macrocystis pyrifera P11B4 male)
GTGCCGCGTCCCCCCGAGGTTTCTCTGTGCGTGGCGTACCTGCTGTGCGT GCCGCCTCTGGGGTTGTTCGGGGCCGTGCACTGGTACCTGGAGCGCGAGG ACCGCGTGTTGCGGCTGTTTACGCTGAATTTCGCGGTTTTTGGGTGGATC TTGGACCTTTTCCTCCTGCCTTCCCTGGTGGCCCGGGCGAACCAGCAGCG GCTCGAATCGGCTCGGCAGATGGCGCTGGACCACGAGCGCCGCAAACGAC GCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122627:92..346+

>mRNA_M-pyrifera_M_contig122627.4658.1 ID=mRNA_M-pyrifera_M_contig122627.4658.1|Name=mRNA_M-pyrifera_M_contig122627.4658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig122627:92..346+ (Macrocystis pyrifera P11B4 male)
GTGCCGCGTCCCCCCGAGGTTTCTCTGTGCGTGGCGTACCTGCTGTGCGT
GCCGCCTCTGGGGTTGTTCGGGGCCGTGCACTGGTACCTGGAGCGCGAGG
ACCGCGTGTTGCGGCTGTTTACGCTGAATTTCGCGGTTTTTGGGTGGATC
TTGGACCTTTTCCTCCTGCCTTCCCTGGTGGCCCGGGCGAACCAGCAGCG
GCTCGAATCGGCTCGGCAGATGGCGCTGGACCACGAGCGCCGCAAACGAC
GCGGTGTGCCGCGTCCCCCCGAGGTTTCTCTGTGCGTGGCGTACCTGCTG
TGCGTGCCGCCTCTGGGGTTGTTCGGGGCCGTGCACTGGTACCTGGAGCG
CGAGGACCGCGTGTTGCGGCTGTTTACGCTGAATTTCGCGGTTTTTGGGT
GGATCTTGGACCTTTTCCTCCTGCCTTCCCTGGTGGCCCGGGCGAACCAG
CAGCGGCTCGAATCGGCTCGGCAGATGGCGCTGGACCACGAGCGCCGCAA
ACGACGCGGT
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