mRNA_M-pyrifera_M_contig12245.4630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12245.4630.1
Unique NamemRNA_M-pyrifera_M_contig12245.4630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A6H5KSH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 7.020e-70
Identity = 112/140 (80.00%), Postives = 121/140 (86.43%), Query Frame = 1
Query:   31 MYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXG------RPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            MY GF+A+MAYAEGFKGFQ+KFSPLVVKRALTLD      XXXX       R GPLRLLLAGPYSMGLFHATKKR TVSW LT GVLCLV +VK+LPYPWRSIVDAGVVVGLSYGTLSIC+IWARAV+G+AP+IDPALPE
Sbjct:    1 MYAGFSAIMAYAEGFKGFQQKFSPLVVKRALTLDPAAXXXXXXXXXXXXXXRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAVLGRAPSIDPALPE 140          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 6.650e-61
Identity = 99/134 (73.88%), Postives = 108/134 (80.60%), Query Frame = 1
Query:   49 ALMAYAEGFKGFQKKFSPLVVKRALTLDSPKT------GGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            A+  ++    GFQKKFSPLVVKRALTLD          GG     R GPLRLLLAGPYSMGLFHATKKR TVSW LT GVLCLV +VK+LPYPWRSIVDAGVVVGLSYGTLSIC+IWARA++GKAP+IDPALPE
Sbjct:  175 AMQPFSRASLGFQKKFSPLVVKRALTLDQAAAAVPAADGGQKRRRRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAILGKAPSIDPALPE 308          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A836CIU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU2_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.910e-50
Identity = 86/142 (60.56%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    4 GDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALP 429
            GD T A W MY GFA LMAYAEG+K FQKKFSP+VV+RALTLD             GPLRL+LAGPYSMGLFHA++KR  VSW L+  VL LV  V+KLPYPWRSI+D GVV GLS+G+ +I   W R+  G  P +D  LP
Sbjct:  129 GDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSA----------GPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLP 260          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A835ZF77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF77_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.410e-50
Identity = 81/143 (56.64%), Postives = 101/143 (70.63%), Query Frame = 1
Query:    4 GDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            GD +   WA+Y  F ALMAY EG K FQKKFSP+VV+RALTLD  +T         GPLR++LAGPY MGLF+AT+KR  VSW L   V+ LV +V++LPYPWRSI+DAGVV GLS+G  +I   W R+  G+AP +D  +PE
Sbjct:   80 GDLSYGHWALYMSFVALMAYVEGHKAFQKKFSPMVVQRALTLDQARTSF-------GPLRIILAGPYCMGLFYATRKRKIVSWTLYISVIALVTVVRQLPYPWRSIIDAGVVAGLSWGASAILYFWVRSWFGRAPGVDAQMPE 215          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: W7TVP9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP9_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.380e-45
Identity = 85/141 (60.28%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   10 FTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            FT   WA Y GFA +MAYAEG+KGFQ KFSPLVVKRALTL            R   L  +LA PYSMGLFHA+KKR  VSW +  GV+ LV  VK L +P+RSIVDAGVV GLS+G LSI  I+A+A+ G  P+IDPALP+
Sbjct:  155 FTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGP----------RSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPD 285          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A7S3SW48_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SW48_EMIHU)

HSP 1 Score: 156 bits (395), Expect = 3.790e-45
Identity = 78/144 (54.17%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    1 QGDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            Q D T  QW +YGG  A  AY EG+K FQ KFSPLVV+RA+TL +           P  L  +LA  YSMGLFHA+KKR TVSW ++ GV C++ +VK+LPYPWRS+VDAGV  GL +G  SI +I+ RA+ GK+P +DP LP+
Sbjct:  103 QRDITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPP-------PPLLHSVLAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPK 239          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A0M0JX49_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX49_9EUKA)

HSP 1 Score: 149 bits (375), Expect = 2.190e-42
Identity = 75/144 (52.08%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 QGDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            Q D +  QW  YGG   + AY EG+  FQKKFSPLVV+RA+TL    +          P+ + LA  YSMGL HATKKR  VSW ++  V  +V IVK+LPYPWRSIVDAGV  GL++G +SI +I+ARA+ G  P +DP LP 
Sbjct:   86 QRDLSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTLKQSTS----------PVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLPS 219          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A7S0EQ72_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQ72_9EUKA)

HSP 1 Score: 147 bits (370), Expect = 1.840e-41
Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 QGDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGP-YSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMGKAPAIDPALPE 432
            Q D T  QW+++G   A  AY EG+K FQ KFSP++V+RA+TL    T          PL  +   P YSMGLFHATKKR  ++W +++GV  +V +VK+LPYPWRSIVDAGVV GL +G  SI  ++ RA++G +P +DP LPE
Sbjct:   99 QRDLTLLQWSLFGSTMAAFAYFEGYKAFQLKFSPMLVQRAMTLSREGT----------PLHHIALAPFYSMGLFHATKKRRIIAWTISSGVALMVGLVKRLPYPWRSIVDAGVVTGLLWGAASIINLYVRALLGSSPGVDPCLPE 233          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A7S4NCU3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCU3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.390e-39
Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   13 TTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARA-VMGKAPAIDPALPE 432
            T+ Q A+Y    A  AY EG+KGFQ KFSPLV  R+ TL           G    + +LLA  YSMGLFHAT+KR+ VSW +T GV  +V  VK+LPYPWR+IVDAGVVVGL++GTLSI L + +A V GK P  DPALPE
Sbjct:   73 TSVQLAIYAATCAWFAYVEGYKGFQLKFSPLVASRSRTL---------VPGTSSFVHILLAPLYSMGLFHATRKRMIVSWSVTLGVAGIVAAVKRLPYPWRNIVDAGVVVGLTWGTLSIMLSYVKAMVTGKNPC-DPALPE 203          
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Match: A0A7S3MHY7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHY7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.720e-39
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    1 QGDFTTAQWAMYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGXXXXGRPGPLRLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDAGVVVGLSYGTLSICLIWARAVMG---KAPAIDPALPEGA 438
            Q D    QWA+Y G+ A MAYAEG+K FQ KFSP+VV+RA  +             P    +LLAGPY MGLF A+KKR+ V W +T GV  L   VKKLPYP+R+IVDAGVVVGLSYGTLSI ++  +A  G   +AP  +    E A
Sbjct:  132 QKDMLPYQWALYAGWCAYMAYAEGYKAFQLKFSPMVVQRAFLIHQ----------NPNIFNVLLAGPYCMGLFGASKKRMIVGWAVTAGVFSLTLFVKKLPYPYRAIVDAGVVVGLSYGTLSILVLAVKAFFGGKVEAPGDEEVTSEPA 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12245.4630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSH0_9PHAE7.020e-7080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTY0_ECTSI6.650e-6173.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CIU2_9STRA2.910e-5060.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF77_9STRA7.410e-5056.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TVP9_9STRA3.380e-4560.28Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3SW48_EMIHU3.790e-4554.17Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A0M0JX49_9EUKA2.190e-4252.08Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0EQ72_9EUKA1.840e-4150.34Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4NCU3_9STRA4.390e-3956.03Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3MHY7_9STRA6.720e-3951.68Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12245contigM-pyrifera_M_contig12245:4521..4961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue5.9e-49
Seed eggNOG ortholog2880.D8LTY0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BRVF@1,2S1X8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3972967-CDS-M-pyrifera_M_contig12245:4520..49311622815744.3972967-CDS-M-pyrifera_M_contig12245:4520..4931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12245 4521..4931 -
1692277548.9423373-CDS-M-pyrifera_M_contig12245:4520..49311692277548.9423373-CDS-M-pyrifera_M_contig12245:4520..4931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12245 4521..4931 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.413199-UTR-M-pyrifera_M_contig12245:4931..49611622815744.413199-UTR-M-pyrifera_M_contig12245:4931..4961Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12245 4932..4961 -
1692277548.9535897-UTR-M-pyrifera_M_contig12245:4931..49611692277548.9535897-UTR-M-pyrifera_M_contig12245:4931..4961Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12245 4932..4961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12245.4630.1prot_M-pyrifera_M_contig12245.4630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12245 4521..4931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12245.4630.1

>prot_M-pyrifera_M_contig12245.4630.1 ID=prot_M-pyrifera_M_contig12245.4630.1|Name=mRNA_M-pyrifera_M_contig12245.4630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MYGGFAALMAYAEGFKGFQKKFSPLVVKRALTLDSPKTGGGGGGGRPGPL
RLLLAGPYSMGLFHATKKRLTVSWGLTTGVLCLVHIVKKLPYPWRSIVDA
GVVVGLSYGTLSICLIWARAVMGKAPAIDPALPEGA*
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mRNA from alignment at M-pyrifera_M_contig12245:4521..4961-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12245.4630.1 ID=mRNA_M-pyrifera_M_contig12245.4630.1|Name=mRNA_M-pyrifera_M_contig12245.4630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig12245:4521..4961- (Macrocystis pyrifera P11B4 male)
CAGGGAGACTTCACCACCGCGCAGTGGGCCATGTACGGCGGCTTCGCCGC ACTGATGGCGTACGCGGAGGGCTTTAAGGGTTTCCAGAAGAAATTCTCCC CGCTCGTGGTCAAGCGCGCGCTCACGCTCGACTCTCCGAAGACGGGCGGC GGCGGTGGGGGGGGGCGGCCGGGGCCCCTGCGCCTCCTCCTGGCGGGCCC GTACAGCATGGGCCTGTTCCACGCTACCAAGAAGCGACTGACGGTCAGCT GGGGACTGACCACGGGCGTGCTGTGCCTGGTGCATATCGTGAAGAAGCTC CCCTACCCGTGGAGGTCCATTGTCGATGCAGGGGTCGTGGTGGGGCTGTC CTACGGCACGCTCTCGATCTGCCTCATCTGGGCGAGGGCGGTGATGGGAA AAGCGCCCGCGATCGACCCGGCGCTGCCGGAGGGGGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12245:4521..4961-

>mRNA_M-pyrifera_M_contig12245.4630.1 ID=mRNA_M-pyrifera_M_contig12245.4630.1|Name=mRNA_M-pyrifera_M_contig12245.4630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig12245:4521..4961- (Macrocystis pyrifera P11B4 male)
ATGTACGGCGGCTTCGCCGCACTGATGGCGTACGCGGAGGGCTTTAAGGG
TTTCCAGAAGAAATTCTCCCCGCTCGTGGTCAAGCGCGCGCTCACGCTCG
ACTCTCCGAAGACGGGCGGCGGCGGTGGGGGGGGGCGGCCGGGGCCCCTG
CGCCTCCTCCTGGCGGGCCCGTACAGCATGGGCCTGTTCCACGCTACCAA
GAAGCGACTGACGGTCAGCTGGGGACTGACCACGGGCGTGCTGTGCCTGG
TGCATATCGTGAAGAAGCTCCCCTACCCGTGGAGGTCCATTGTCGATGCA
GGGGTCGTGGTGGGGCTGTCCTACGGCACGCTCTCGATCTGCCTCATCTG
GGCGAGGGCGGTGATGGGAAAAGCGCCCGCGATCGACCCGGCGCTGCCGG
AGGGGGCCTAAATGTACGGCGGCTTCGCCGCACTGATGGCGTACGCGGAG
GGCTTTAAGGGTTTCCAGAAGAAATTCTCCCCGCTCGTGGTCAAGCGCGC
GCTCACGCTCGACTCTCCGAAGACGGGCGGCGGCGGTGGGGGGGGGCGGC
CGGGGCCCCTGCGCCTCCTCCTGGCGGGCCCGTACAGCATGGGCCTGTTC
CACGCTACCAAGAAGCGACTGACGGTCAGCTGGGGACTGACCACGGGCGT
GCTGTGCCTGGTGCATATCGTGAAGAAGCTCCCCTACCCGTGGAGGTCCA
TTGTCGATGCAGGGGTCGTGGTGGGGCTGTCCTACGGCACGCTCTCGATC
TGCCTCATCTGGGCGAGGGCGGTGATGGGAAAAGCGCCCGCGATCGACCC
GGCGCTGCCGGAGGGGGCCTAA
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