mRNA_M-pyrifera_M_contig122384.4615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122384.4615.1
Unique NamemRNA_M-pyrifera_M_contig122384.4615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2E7KCX2_9PLAN (Transcriptional regulator n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCX2_9PLAN)

HSP 1 Score: 290 bits (743), Expect = 7.990e-99
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
            HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQL+VSLRTVNNDWKYAKAWLYRELGPGTESDSADE
Sbjct:   35 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLEVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 182          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A6C669_9PLAN (DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=2 Tax=Gimesia TaxID=1649453 RepID=A6C669_9PLAN)

HSP 1 Score: 266 bits (679), Expect = 4.540e-89
Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
            HSLQPTLLVNDAYL+L+EQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGG +GRGIPLHISVADDA  LDILELN+ALETLA ELPRAARIVELKFFGGLTGEEIA QLDVSLRTVNNDWKYAKAWLYR LGP TES+ AD+
Sbjct:   35 HSLQPTLLVNDAYLRLKEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGKEGRGIPLHISVADDAKGLDILELNEALETLAKELPRAARIVELKFFGGLTGEEIAEQLDVSLRTVNNDWKYAKAWLYRALGPDTESNQADD 182          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A6C240_9PLAN (DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C240_9PLAN)

HSP 1 Score: 259 bits (662), Expect = 1.770e-86
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
            HSLQPTLLVNDAYL+LQEQ+NLDPADRS M+AAGATIIRRLLVDYAR+RKRLKRGG  GRGIPLHISV D A +LDILELNDALE LA ELPRAARIVELKFFGGLTGEEIA QL+VSLRTVNNDWKYAKAWLYRELGPGTESD  +E
Sbjct:   35 HSLQPTLLVNDAYLRLQEQRNLDPADRSQMMAAGATIIRRLLVDYARERKRLKRGGKAGRGIPLHISVTDAARELDILELNDALEALARELPRAARIVELKFFGGLTGEEIAEQLEVSLRTVNNDWKYAKAWLYRELGPGTESDETNE 182          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A518JW93_9BACT (RNA polymerase sigma factor n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JW93_9BACT)

HSP 1 Score: 242 bits (617), Expect = 1.140e-79
Identity = 118/144 (81.94%), Postives = 132/144 (91.67%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESD 432
            HS+QPTLLVNDA+L+LQ+Q+N+DP DRS+MLAAGATIIRRLLVDYARQRKR KRGG DGRGIPLH+SVAD+A  LD+L LNDALE LA ELPRAARIVELKFFGGL GEEIA QL++SLRTVNNDWK+AKAWLYRELGP  E+D
Sbjct:   36 HSMQPTLLVNDAFLRLQDQRNVDPGDRSMMLAAGATIIRRLLVDYARQRKRQKRGGKDGRGIPLHVSVADNAKGLDVLILNDALEALAKELPRAARIVELKFFGGLKGEEIAEQLNISLRTVNNDWKFAKAWLYRELGPDDEND 179          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2S8F2N0_9BACT (Transcriptional regulator n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F2N0_9BACT)

HSP 1 Score: 226 bits (575), Expect = 3.460e-73
Identity = 109/148 (73.65%), Postives = 131/148 (88.51%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
            HSLQPTLLV+DAYL+LQ+QQNL+  DRS+MLAAGA IIRRLLVDYARQRK  KRGG  GRGIPLHISVA+DAN++D+LELNDALE  +  +PRAA +VELKFFGG+TG+EIA +L +SLR+VNNDWK+AKAWLYRELG  +ES++ D+
Sbjct:   35 HSLQPTLLVHDAYLRLQKQQNLNEDDRSMMLAAGANIIRRLLVDYARQRKSQKRGGKTGRGIPLHISVAEDANRIDVLELNDALEAFSKVMPRAAEVVELKFFGGMTGDEIANKLGISLRSVNNDWKFAKAWLYRELGSFSESENEDD 182          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2E2BZ13_9PLAN (Transcriptional regulator n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2BZ13_9PLAN)

HSP 1 Score: 212 bits (540), Expect = 5.280e-68
Identity = 104/138 (75.36%), Postives = 122/138 (88.41%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELG 414
            HSLQPTLLVNDAY++L +Q+N   +DRS +LAAGA IIRR+LVDYAR+RK  KRGG DGRGI LH+SVADDANQ+DILELNDALE L SE PRAA++VELKFFGGL G+EIA QL +SLRTVNNDW++A+AWLYR+LG
Sbjct:   36 HSLQPTLLVNDAYMRLLDQRNFCLSDRSQVLAAGAVIIRRILVDYARKRKAQKRGGMDGRGIALHVSVADDANQIDILELNDALEALHSESPRAAQVVELKFFGGLCGDEIAQQLGISLRTVNNDWRFARAWLYRKLG 173          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: X1A2I7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1A2I7_9ZZZZ)

HSP 1 Score: 199 bits (505), Expect = 2.410e-62
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVA-----DDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYREL 411
            HSLQPTLLVNDAYL+L EQ+N++P DRS ++AAGA IIRRLLVDYAR+RK LKRGG  GRGIPLH+ +      D+ NQL++LELN+ALE+L  + PRAA++VELKFFGGLT +E++ Q+ VSLRTV NDW+ AKAWLYREL
Sbjct:   36 HSLQPTLLVNDAYLRLLEQRNVNPEDRSAVMAAGAKIIRRLLVDYARKRKSLKRGGEKGRGIPLHLLITANANQDNTNQLEVLELNEALESLGQQRPRAAQVVELKFFGGLTSQEVSEQIGVSLRTVKNDWRVAKAWLYREL 177          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A517QLH0_9PLAN (RNA polymerase sigma factor SigL n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QLH0_9PLAN)

HSP 1 Score: 182 bits (461), Expect = 4.810e-56
Identity = 94/137 (68.61%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYREL 411
            HSLQPTLL+NDAYLKL EQ+NL+  DRS +LAAGA  IRRLL+DYAR RK L RGG+ GRGI L+ISVAD AN + +LEL+D L+ L  E  R A++VELK+FGGLT  EIA +LDVSL TVNN+W  AKAWLYREL
Sbjct:   32 HSLQPTLLLNDAYLKLIEQRNLNFEDRSQVLAAGAVAIRRLLIDYARSRKALSRGGSAGRGISLNISVADSANTIGLLELDDVLKRLGEENQRQAKVVELKYFGGLTVAEIAKELDVSLGTVNNEWVTAKAWLYREL 168          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A517QKY7_9PLAN (RNA polymerase sigma factor SigL n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QKY7_9PLAN)

HSP 1 Score: 165 bits (418), Expect = 1.970e-49
Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESD 432
            HSLQPTLLVNDA ++L EQ+N+D ADR   +AAGA IIRRLLVDYAR+RK  KRGG++ R   +  ++     ++DI+EL DALE+LA E PR   +VE K FGG+TGEEIA  L VSL TVN+DW+YAKAWL REL   TES+
Sbjct:   35 HSLQPTLLVNDAVMRLLEQRNVDIADRCQAMAAGANIIRRLLVDYARRRKAQKRGGSEQRNRGVSPAIIAGTARIDIVELEDALESLARENPRLVEVVEQKVFGGMTGEEIAEYLKVSLTTVNSDWRYAKAWLARELR-STESE 177          
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A518HRW9_9BACT (RNA polymerase sigma factor n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HRW9_9BACT)

HSP 1 Score: 163 bits (412), Expect = 1.870e-48
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDS 435
            HSLQPTLLVNDAYL+L EQ+N+DP +RS ++AAGATIIRRLLVDYAR+RK  KRGG +GRG+ + I  A                  + + PRAAR+VELKFFGGL+G+E+A++L V+  TV NDW++A+AWLY ELG   ESD+
Sbjct:   35 HSLQPTLLVNDAYLRLLEQKNVDPENRSQVVAAGATIIRRLLVDYARRRKAKKRGGAEGRGVSMSIDQAXXXXXXXXXXXXXXXXXXSRQNPRAARVVELKFFGGLSGDEMASELGVTRVTVQNDWRHARAWLYTELG--NESDA 177          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KCX2_9PLAN7.990e-9999.32Transcriptional regulator n=4 Tax=Gimesia TaxID=16... [more]
A6C669_9PLAN4.540e-8990.54DNA-directed RNA polymerase specialized sigma subu... [more]
A6C240_9PLAN1.770e-8687.84DNA-directed RNA polymerase specialized sigma subu... [more]
A0A518JW93_9BACT1.140e-7981.94RNA polymerase sigma factor n=1 Tax=Rosistilla car... [more]
A0A2S8F2N0_9BACT3.460e-7373.65Transcriptional regulator n=2 Tax=Pirellulaceae Ta... [more]
A0A2E2BZ13_9PLAN5.280e-6875.36Transcriptional regulator n=1 Tax=Gimesia sp. TaxI... [more]
X1A2I7_9ZZZZ2.410e-6268.31Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A517QLH0_9PLAN4.810e-5668.61RNA polymerase sigma factor SigL n=1 Tax=Thalassog... [more]
A0A517QKY7_9PLAN1.970e-4961.11RNA polymerase sigma factor SigL n=1 Tax=Thalassog... [more]
A0A518HRW9_9BACT1.870e-4857.93RNA polymerase sigma factor n=1 Tax=Stieleria nept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122384contigM-pyrifera_M_contig122384:82..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score265.4
Seed ortholog evalue1.6e-68
Seed eggNOG ortholog344747.PM8797T_31223
KEGG koko:K02405
KEGG Pathwayko02020,ko02025,ko02026,ko02040,ko05111,map02020,map02025,map02026,map02040,map05111
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog
EggNOG OGs2J3FS@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko03021
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.7135715-CDS-M-pyrifera_M_contig122384:81..5281622815743.7135715-CDS-M-pyrifera_M_contig122384:81..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122384 82..528 -
1692277548.612775-CDS-M-pyrifera_M_contig122384:81..5281692277548.612775-CDS-M-pyrifera_M_contig122384:81..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122384 82..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122384.4615.1prot_M-pyrifera_M_contig122384.4615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122384 82..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122384.4615.1

>prot_M-pyrifera_M_contig122384.4615.1 ID=prot_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRK
RLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVEL
KFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE*
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mRNA from alignment at M-pyrifera_M_contig122384:82..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122384.4615.1 ID=mRNA_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig122384:82..528- (Macrocystis pyrifera P11B4 male)
CATTCCCTGCAACCCACGCTGCTCGTCAACGATGCGTACCTCAAACTGCA GGAACAGCAGAATCTCGATCCCGCAGATCGATCCCTGATGCTGGCCGCCG GCGCGACCATTATTCGTCGCCTGCTTGTCGATTACGCCCGGCAGCGAAAA CGACTCAAACGGGGAGGAAATGACGGTCGTGGAATTCCGTTGCACATTTC TGTCGCCGATGACGCCAATCAGTTAGACATCCTGGAATTGAATGACGCCC TGGAGACGCTCGCCAGCGAGTTGCCCCGGGCAGCCAGGATTGTGGAACTG AAATTTTTTGGTGGTTTGACGGGCGAAGAGATCGCCGCACAACTGGATGT CTCATTACGGACAGTCAATAACGACTGGAAGTATGCGAAAGCCTGGTTGT ATCGCGAACTCGGTCCCGGCACAGAAAGTGATTCTGCAGATGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122384:82..528-

>mRNA_M-pyrifera_M_contig122384.4615.1 ID=mRNA_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig122384:82..528- (Macrocystis pyrifera P11B4 male)
CATTCCCTGCAACCCACGCTGCTCGTCAACGATGCGTACCTCAAACTGCA
GGAACAGCAGAATCTCGATCCCGCAGATCGATCCCTGATGCTGGCCGCCG
GCGCGACCATTATTCGTCGCCTGCTTGTCGATTACGCCCGGCAGCGAAAA
CGACTCAAACGGGGAGGAAATGACGGTCGTGGAATTCCGTTGCACATTTC
TGTCGCCGATGACGCCAATCAGTTAGACATCCTGGAATTGAATGACGCCC
TGGAGACGCTCGCCAGCGAGTTGCCCCGGGCAGCCAGGATTGTGGAACTG
AAATTTTTTGGTGGTTTGACGGGCGAAGAGATCGCCGCACAACTGGATGT
CTCATTACGGACAGTCAATAACGACTGGAAGTATGCGAAAGCCTGGTTGT
ATCGCGAACTCGGTCCCGGCACAGAAAGTGATTCTGCAGATGAGTAACAT
TCCCTGCAACCCACGCTGCTCGTCAACGATGCGTACCTCAAACTGCAGGA
ACAGCAGAATCTCGATCCCGCAGATCGATCCCTGATGCTGGCCGCCGGCG
CGACCATTATTCGTCGCCTGCTTGTCGATTACGCCCGGCAGCGAAAACGA
CTCAAACGGGGAGGAAATGACGGTCGTGGAATTCCGTTGCACATTTCTGT
CGCCGATGACGCCAATCAGTTAGACATCCTGGAATTGAATGACGCCCTGG
AGACGCTCGCCAGCGAGTTGCCCCGGGCAGCCAGGATTGTGGAACTGAAA
TTTTTTGGTGGTTTGACGGGCGAAGAGATCGCCGCACAACTGGATGTCTC
ATTACGGACAGTCAATAACGACTGGAAGTATGCGAAAGCCTGGTTGTATC
GCGAACTCGGTCCCGGCACAGAAAGTGATTCTGCAGATGAGTAA
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