mRNA_M-pyrifera_M_contig122384.4615.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2E7KCX2_9PLAN (Transcriptional regulator n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCX2_9PLAN) HSP 1 Score: 290 bits (743), Expect = 7.990e-99 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQL+VSLRTVNNDWKYAKAWLYRELGPGTESDSADE
Sbjct: 35 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLEVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 182
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A6C669_9PLAN (DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=2 Tax=Gimesia TaxID=1649453 RepID=A6C669_9PLAN) HSP 1 Score: 266 bits (679), Expect = 4.540e-89 Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
HSLQPTLLVNDAYL+L+EQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGG +GRGIPLHISVADDA LDILELN+ALETLA ELPRAARIVELKFFGGLTGEEIA QLDVSLRTVNNDWKYAKAWLYR LGP TES+ AD+
Sbjct: 35 HSLQPTLLVNDAYLRLKEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGKEGRGIPLHISVADDAKGLDILELNEALETLAKELPRAARIVELKFFGGLTGEEIAEQLDVSLRTVNNDWKYAKAWLYRALGPDTESNQADD 182
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A6C240_9PLAN (DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C240_9PLAN) HSP 1 Score: 259 bits (662), Expect = 1.770e-86 Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
HSLQPTLLVNDAYL+LQEQ+NLDPADRS M+AAGATIIRRLLVDYAR+RKRLKRGG GRGIPLHISV D A +LDILELNDALE LA ELPRAARIVELKFFGGLTGEEIA QL+VSLRTVNNDWKYAKAWLYRELGPGTESD +E
Sbjct: 35 HSLQPTLLVNDAYLRLQEQRNLDPADRSQMMAAGATIIRRLLVDYARERKRLKRGGKAGRGIPLHISVTDAARELDILELNDALEALARELPRAARIVELKFFGGLTGEEIAEQLEVSLRTVNNDWKYAKAWLYRELGPGTESDETNE 182
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A518JW93_9BACT (RNA polymerase sigma factor n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JW93_9BACT) HSP 1 Score: 242 bits (617), Expect = 1.140e-79 Identity = 118/144 (81.94%), Postives = 132/144 (91.67%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESD 432
HS+QPTLLVNDA+L+LQ+Q+N+DP DRS+MLAAGATIIRRLLVDYARQRKR KRGG DGRGIPLH+SVAD+A LD+L LNDALE LA ELPRAARIVELKFFGGL GEEIA QL++SLRTVNNDWK+AKAWLYRELGP E+D
Sbjct: 36 HSMQPTLLVNDAFLRLQDQRNVDPGDRSMMLAAGATIIRRLLVDYARQRKRQKRGGKDGRGIPLHVSVADNAKGLDVLILNDALEALAKELPRAARIVELKFFGGLKGEEIAEQLNISLRTVNNDWKFAKAWLYRELGPDDEND 179
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2S8F2N0_9BACT (Transcriptional regulator n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F2N0_9BACT) HSP 1 Score: 226 bits (575), Expect = 3.460e-73 Identity = 109/148 (73.65%), Postives = 131/148 (88.51%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDSADE 444
HSLQPTLLV+DAYL+LQ+QQNL+ DRS+MLAAGA IIRRLLVDYARQRK KRGG GRGIPLHISVA+DAN++D+LELNDALE + +PRAA +VELKFFGG+TG+EIA +L +SLR+VNNDWK+AKAWLYRELG +ES++ D+
Sbjct: 35 HSLQPTLLVHDAYLRLQKQQNLNEDDRSMMLAAGANIIRRLLVDYARQRKSQKRGGKTGRGIPLHISVAEDANRIDVLELNDALEAFSKVMPRAAEVVELKFFGGMTGDEIANKLGISLRSVNNDWKFAKAWLYRELGSFSESENEDD 182
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A2E2BZ13_9PLAN (Transcriptional regulator n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2BZ13_9PLAN) HSP 1 Score: 212 bits (540), Expect = 5.280e-68 Identity = 104/138 (75.36%), Postives = 122/138 (88.41%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELG 414
HSLQPTLLVNDAY++L +Q+N +DRS +LAAGA IIRR+LVDYAR+RK KRGG DGRGI LH+SVADDANQ+DILELNDALE L SE PRAA++VELKFFGGL G+EIA QL +SLRTVNNDW++A+AWLYR+LG
Sbjct: 36 HSLQPTLLVNDAYMRLLDQRNFCLSDRSQVLAAGAVIIRRILVDYARKRKAQKRGGMDGRGIALHVSVADDANQIDILELNDALEALHSESPRAAQVVELKFFGGLCGDEIAQQLGISLRTVNNDWRFARAWLYRKLG 173
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: X1A2I7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1A2I7_9ZZZZ) HSP 1 Score: 199 bits (505), Expect = 2.410e-62 Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVA-----DDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYREL 411
HSLQPTLLVNDAYL+L EQ+N++P DRS ++AAGA IIRRLLVDYAR+RK LKRGG GRGIPLH+ + D+ NQL++LELN+ALE+L + PRAA++VELKFFGGLT +E++ Q+ VSLRTV NDW+ AKAWLYREL
Sbjct: 36 HSLQPTLLVNDAYLRLLEQRNVNPEDRSAVMAAGAKIIRRLLVDYARKRKSLKRGGEKGRGIPLHLLITANANQDNTNQLEVLELNEALESLGQQRPRAAQVVELKFFGGLTSQEVSEQIGVSLRTVKNDWRVAKAWLYREL 177
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A517QLH0_9PLAN (RNA polymerase sigma factor SigL n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QLH0_9PLAN) HSP 1 Score: 182 bits (461), Expect = 4.810e-56 Identity = 94/137 (68.61%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYREL 411
HSLQPTLL+NDAYLKL EQ+NL+ DRS +LAAGA IRRLL+DYAR RK L RGG+ GRGI L+ISVAD AN + +LEL+D L+ L E R A++VELK+FGGLT EIA +LDVSL TVNN+W AKAWLYREL
Sbjct: 32 HSLQPTLLLNDAYLKLIEQRNLNFEDRSQVLAAGAVAIRRLLIDYARSRKALSRGGSAGRGISLNISVADSANTIGLLELDDVLKRLGEENQRQAKVVELKYFGGLTVAEIAKELDVSLGTVNNEWVTAKAWLYREL 168
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A517QKY7_9PLAN (RNA polymerase sigma factor SigL n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QKY7_9PLAN) HSP 1 Score: 165 bits (418), Expect = 1.970e-49 Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESD 432
HSLQPTLLVNDA ++L EQ+N+D ADR +AAGA IIRRLLVDYAR+RK KRGG++ R + ++ ++DI+EL DALE+LA E PR +VE K FGG+TGEEIA L VSL TVN+DW+YAKAWL REL TES+
Sbjct: 35 HSLQPTLLVNDAVMRLLEQRNVDIADRCQAMAAGANIIRRLLVDYARRRKAQKRGGSEQRNRGVSPAIIAGTARIDIVELEDALESLARENPRLVEVVEQKVFGGMTGEEIAEYLKVSLTTVNSDWRYAKAWLARELR-STESE 177
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Match: A0A518HRW9_9BACT (RNA polymerase sigma factor n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HRW9_9BACT) HSP 1 Score: 163 bits (412), Expect = 1.870e-48 Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 1
Query: 1 HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKRLKRGGNDGRGIPLHISVADDANQLDILELNDALETLASELPRAARIVELKFFGGLTGEEIAAQLDVSLRTVNNDWKYAKAWLYRELGPGTESDS 435
HSLQPTLLVNDAYL+L EQ+N+DP +RS ++AAGATIIRRLLVDYAR+RK KRGG +GRG+ + I A + + PRAAR+VELKFFGGL+G+E+A++L V+ TV NDW++A+AWLY ELG ESD+
Sbjct: 35 HSLQPTLLVNDAYLRLLEQKNVDPENRSQVVAAGATIIRRLLVDYARRRKAKKRGGAEGRGVSMSIDQAXXXXXXXXXXXXXXXXXXSRQNPRAARVVELKFFGGLSGDEMASELGVTRVTVQNDWRHARAWLYTELG--NESDA 177 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122384.4615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig122384.4615.1 >prot_M-pyrifera_M_contig122384.4615.1 ID=prot_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp HSLQPTLLVNDAYLKLQEQQNLDPADRSLMLAAGATIIRRLLVDYARQRKback to top mRNA from alignment at M-pyrifera_M_contig122384:82..528- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig122384.4615.1 ID=mRNA_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig122384:82..528- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig122384:82..528- >mRNA_M-pyrifera_M_contig122384.4615.1 ID=mRNA_M-pyrifera_M_contig122384.4615.1|Name=mRNA_M-pyrifera_M_contig122384.4615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig122384:82..528- (Macrocystis pyrifera P11B4 male)back to top |