mRNA_M-pyrifera_M_contig122199.4575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122199.4575.1
Unique NamemRNA_M-pyrifera_M_contig122199.4575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A109FF30_9BASI (SET domain-containing protein (Fragment) n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A109FF30_9BASI)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWSVTDEHG--GAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIP 204
            ++TP+L PG+DLLNH P A   WS TD HG  G+  +V  + ++ GS++FN Y   SN  LL  +GF +P
Sbjct:  172 NSTPVLFPGIDLLNHRPTAKVTWS-TDVHGVPGSLTIVLDEAVSAGSQIFNTYGAKSNEELLLGYGFVLP 240          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A7S4UBX5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UBX5_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 6.160e-8
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 TPLLTPGVDLLNHAPGAVTRWSVTDEHGGA---FHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            TP + P  DL NH PGA  R +V  +H  A     L+   ++APGSELF  Y +LSNA LL   GF++ +N
Sbjct:  196 TPCMAPFADLFNHDPGADRR-AVFPQHDAATGDLRLLCRSDVAPGSELFISYGELSNADLLFNSGFALESN 265          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A194S6H0_RHOGW (SET domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S6H0_RHOGW)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-7
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWSVTDEHG-----------GAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PG+D+LNH P A   WS +D H            G+  +V  +++  G ++FN Y   SN  LL  +GF +P+N
Sbjct:  393 NSTPVLFPGIDMLNHRPTAKVTWS-SDVHAEVASSDGEGDKGSLTIVLDEDVPAGEQVFNTYGAKSNEELLLGYGFVLPSN 472          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A0K3CHE7_RHOTO (BY PROTMAP: gi|342321631|gb|EGU13564.1| putative Cytoplasm protein [Rhodotorula glutinis ATCC 204091] n=3 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CHE7_RHOTO)

HSP 1 Score: 54.3 bits (129), Expect = 7.700e-7
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWSVTDE----------HGGAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PGVDLLNH P A   W    E            G+  +V  +E+  G++++N Y   +N  LL  +GF +P+N
Sbjct:  839 NSTPVLFPGVDLLNHRPEARVTWFSDTETEIKRVDGRVEKGSLTIVLDEEIPAGAQVYNTYGAKANEELLLGYGFVLPSN 918          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A511K8F2_RHOTO (Lysine methyltransferase n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511K8F2_RHOTO)

HSP 1 Score: 53.9 bits (128), Expect = 1.010e-6
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWSVTDEHG-----------GAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PGVDLLNH P A   W    + G           G+  +V  +E+  G++++N Y   +N  LL  +GF +P+N
Sbjct:  116 NSTPVLFPGVDLLNHRPDARVTWFRDLDAGIERADGVAAEKGSLTIVLDEEIPAGAQVYNTYGAKANEELLLGYGFVLPSN 196          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A8H3I5V8_9LECA (Uncharacterized protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3I5V8_9LECA)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    7 TPLLTPGVDLLNHAPGAVTRWSVTDEHGGAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            +P+L PGVDLLNH P A   W  T  +     LV  + L  G+ + N Y Q SN  L+  +GFS+  N
Sbjct:  221 SPVLIPGVDLLNHRPSAKVTWQWTSVN---CRLVINENLGAGTPICNNYGQKSNEELILGYGFSLADN 285          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: M7WYB3_RHOT1 (Lysine methyltransferase n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WYB3_RHOT1)

HSP 1 Score: 53.1 bits (126), Expect = 1.920e-6
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRW----SVTDEHG-------GAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PGVDLLNH P A   W       +E         G+  +V  +E+  G++++N Y   +N  LL  +GF +P+N
Sbjct:  205 NSTPVLFPGVDLLNHRPDARVTWFSDMDTENERADGRAVGKGSLTIVLDEEIPAGAQVYNTYGAKANEELLLGYGFVLPSN 285          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A5C5G6C5_9BASI (SET domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G6C5_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 2.630e-6
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWSV---------TDEHGG---AFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PG+D+LNH P A   WS          TD  GG   +  +V  +++  G ++FN Y   SN  LL  +GF +  N
Sbjct:  207 NSTPVLFPGIDMLNHRPTAKVTWSSDVRSVAPSGTDGDGGDKGSLTIVLDEDVGAGEQVFNTYGAKSNEELLLGYGFVLSPN 288          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A2S5BJB8_9BASI (SET domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BJB8_9BASI)

HSP 1 Score: 52.0 bits (123), Expect = 4.920e-6
Identity = 29/85 (34.12%), Postives = 42/85 (49.41%), Query Frame = 1
Query:    1 HNTPLLTPGVDLLNHAPGAVTRWS---------------VTDEHGGAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            ++TP+L PGVDLLNH P A   WS               V  E  G   +V  + ++  +++FN Y   SN  LL  +GF +P +
Sbjct:  215 NSTPVLFPGVDLLNHRPTAKVTWSTDKPMSLEAAAAARAVRVEDVGGLSIVVDERVSADTQVFNTYGAKSNEELLLGYGFVLPGS 299          
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Match: A0A1Y2FXT9_9BASI (SET domain-containing protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FXT9_9BASI)

HSP 1 Score: 48.9 bits (115), Expect = 6.000e-5
Identity = 28/76 (36.84%), Postives = 39/76 (51.32%), Query Frame = 1
Query:    4 NTPLLTPGVDLLNHAPGAVTRWSVTD-------EHGGAFHLVAGKELAPGSELFNEYAQLSNAVLLARHGFSIPAN 210
            +TP+L PGVD+LNH  GA   W +TD       E  G   +V  + +    + FN Y    N  LL  +GF+ P+N
Sbjct:  198 STPVLFPGVDMLNHRLGAKASW-ITDVNEPAVREPKGKLAIVLDEGVEKDQQAFNTYGPKPNEELLLGYGFTTPSN 272          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122199.4575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A109FF30_9BASI2.230e-1045.71SET domain-containing protein (Fragment) n=1 Tax=R... [more]
A0A7S4UBX5_9DINO6.160e-845.07Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A194S6H0_RHOGW1.160e-735.80SET domain-containing protein n=1 Tax=Rhodotorula ... [more]
A0A0K3CHE7_RHOTO7.700e-735.00BY PROTMAP: gi|342321631|gb|EGU13564.1| putative C... [more]
A0A511K8F2_RHOTO1.010e-634.57Lysine methyltransferase n=1 Tax=Rhodosporidium to... [more]
A0A8H3I5V8_9LECA1.040e-641.18Uncharacterized protein n=1 Tax=Heterodermia speci... [more]
M7WYB3_RHOT11.920e-634.57Lysine methyltransferase n=2 Tax=Rhodosporidium to... [more]
A0A5C5G6C5_9BASI2.630e-635.37SET domain-containing protein n=1 Tax=Rhodotorula ... [more]
A0A2S5BJB8_9BASI4.920e-634.12SET domain-containing protein n=1 Tax=Rhodotorula ... [more]
A0A1Y2FXT9_9BASI6.000e-536.84SET domain-containing protein n=1 Tax=Leucosporidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122199contigM-pyrifera_M_contig122199:1..210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.9015493-CDS-M-pyrifera_M_contig122199:0..2101622815741.9015493-CDS-M-pyrifera_M_contig122199:0..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122199 1..210 -
1692277547.8981118-CDS-M-pyrifera_M_contig122199:0..2101692277547.8981118-CDS-M-pyrifera_M_contig122199:0..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122199 1..210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122199.4575.1prot_M-pyrifera_M_contig122199.4575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122199 1..210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122199.4575.1

>prot_M-pyrifera_M_contig122199.4575.1 ID=prot_M-pyrifera_M_contig122199.4575.1|Name=mRNA_M-pyrifera_M_contig122199.4575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
HNTPLLTPGVDLLNHAPGAVTRWSVTDEHGGAFHLVAGKELAPGSELFNE
YAQLSNAVLLARHGFSIPAN
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mRNA from alignment at M-pyrifera_M_contig122199:1..210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122199.4575.1 ID=mRNA_M-pyrifera_M_contig122199.4575.1|Name=mRNA_M-pyrifera_M_contig122199.4575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig122199:1..210- (Macrocystis pyrifera P11B4 male)
CATAATACGCCATTGCTTACTCCAGGTGTTGACCTCCTCAATCATGCACC AGGTGCAGTGACACGATGGAGTGTCACAGATGAACATGGTGGAGCGTTTC ATCTGGTTGCTGGTAAAGAATTGGCTCCTGGAAGTGAGTTGTTCAATGAG TATGCTCAGCTCTCAAATGCTGTGCTTCTTGCAAGGCATGGGTTTTCTAT TCCAGCAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122199:1..210-

>mRNA_M-pyrifera_M_contig122199.4575.1 ID=mRNA_M-pyrifera_M_contig122199.4575.1|Name=mRNA_M-pyrifera_M_contig122199.4575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig122199:1..210- (Macrocystis pyrifera P11B4 male)
CATAATACGCCATTGCTTACTCCAGGTGTTGACCTCCTCAATCATGCACC
AGGTGCAGTGACACGATGGAGTGTCACAGATGAACATGGTGGAGCGTTTC
ATCTGGTTGCTGGTAAAGAATTGGCTCCTGGAAGTGAGTTGTTCAATGAG
TATGCTCAGCTCTCAAATGCTGTGCTTCTTGCAAGGCATGGGTTTTCTAT
TCCAGCAAATCATAATACGCCATTGCTTACTCCAGGTGTTGACCTCCTCA
ATCATGCACCAGGTGCAGTGACACGATGGAGTGTCACAGATGAACATGGT
GGAGCGTTTCATCTGGTTGCTGGTAAAGAATTGGCTCCTGGAAGTGAGTT
GTTCAATGAGTATGCTCAGCTCTCAAATGCTGTGCTTCTTGCAAGGCATG
GGTTTTCTATTCCAGCAAAT
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