mRNA_M-pyrifera_M_contig122135.4554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122135.4554.1
Unique NamemRNA_M-pyrifera_M_contig122135.4554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: A0A506PFD6_9FLAO (HYR domain-containing protein (Fragment) n=1 Tax=Paucihalobacter ruber TaxID=2567861 RepID=A0A506PFD6_9FLAO)

HSP 1 Score: 67.4 bits (163), Expect = 8.170e-11
Identity = 47/132 (35.61%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    1 TQQIFITDMEGPVLTAAPA-LDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPA--------DFVGNCNSVASIGTPTGTDDC 369
            TQ I + D   P L   PA + VE D   A  + T        D C+  +     +  +T   G   IVR W   DN GN   + TQTIT  DNTPP++T PA        D  GNC ++  +G PT +D+C
Sbjct:   73 TQTISVVDSTAPELVGVPADITVECDAIPALPNVTAT------DNCDTTLSVNYTETSNTVTDGVGTIVRQWSITDNGGNT-TTETQTITVVDNTPPIITCPANITAQTSNDGAGNCTTIVDLGNPTVSDNC 197          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: A0A7Y3FRW3_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y3FRW3_9FLAO)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-10
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    1 TQQIFITDMEGPVLTAAPALDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPSTP--CPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPADFVGNCN-----SVASIGTPTGTDDC 369
            +Q I + D   PV  A PA D+ L C  +D  A    + T  D C+G I  +P  N +TP  C    ++VRTW   D+CGN   S +QTIT  D+TPP++T PAD           S A+ G+ T TD+C
Sbjct:   60 SQTITVNDDTAPVPPAPPA-DLNLQCA-SDVPAAV--DLTATDNCDGDITVSPTAN-TTPGACANDFVMVRTWTFTDDCGNTS-SVSQTITVNDDTPPVITCPADLTLEAGPNLDISPANTGSATATDNC 183          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: UPI00115DE7FC (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Changchengzhania lutea TaxID=2049305 RepID=UPI00115DE7FC)

HSP 1 Score: 65.1 bits (157), Expect = 1.020e-9
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 1
Query:    1 TQQIFITDMEGPVLT-AAPALDVELDCFMADTSATTNG-EPTFDDVC---NGAIRSAPFDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPADFVGNCN---SVASIGTPTGTDDC 369
            T    I D   P+++  A  LD  L+C  AD  A      PT  D C   N  + +    N  T CP   +  R W+  D CGN  ++FTQTIT  D TPP V  P++    C+   S  + GT T TD+C
Sbjct: 1254 TATYLIKDGTAPIISNTAGDLDTTLECSDADGIAAALALSPTASDDCSTPNLVLINNETAN-DTECPNAYVQTRIWNFVDACGNLSDTFTQTITVVDTTPPTVVFPSNVTAECSDDLSPIAFGTATATDNC 1383          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: A0A2V2S6A0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2S6A0_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.620e-9
Identity = 42/128 (32.81%), Postives = 59/128 (46.09%), Query Frame = 1
Query:    4 QQIFITDMEGPVLTAAPALDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPADFVGNC---NSVASIGTPTGTDDCSSV 378
            Q I + D   P L+  P  +  L C  A+ +    G  T  D C+  +     D+ + PCPG+++I RTW + D CGN      Q IT  D  PP +T P +    C    S    G  T +D CS+V
Sbjct:  769 QTITLRDTTPPSLSLPP--NKVLQC-PANVTTNNTGTATAQDACSAPVAIRFSDSVTNPCPGSSVITRTWTATDACGNSTNGI-QMITVQDTNPPTITPPQNVTLECPADTSTNHTGMATASDTCSAV 892          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: V6SHP1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 TaxID=1341181 RepID=V6SHP1_9FLAO)

HSP 1 Score: 62.4 bits (150), Expect = 8.810e-9
Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 1
Query:    1 TQQIFITDMEGPVLTAAPALDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTA--PADFVGNCNSVASIGTPTGTDDCSSV 378
            TQ I + D   PV       ++ L+C     +  T    T  D CN A  +   +  +  CPG + I+RTW +AD CGN+     QTI+  D TPP+ T   P +    C ++ +  T T TD C  V
Sbjct: 1070 TQTIRVNDTTAPVFNETLPTNLTLECNAGIPNPVTL---TATDNCNSATVTFEEETTNGTCPGNSEIIRTWRTADACGNENTHI-QTISILDTTPPVFTGNLPPNQTLECGNIPTAPTLTATDSCGEV 1193          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: A0A7V1ZTR8_9BACT (HYR domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7V1ZTR8_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.660e-8
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   61 DVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFD----NPSTP--CPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPADFVGNCNSVASIGTPTGTDDCSSV 378
            DV++DC  + T  +  G P  +  C       PFD    +  TP  CP    I R W   D  G   +S  Q I+ +D TPP++T PAD V  C++V   G+ T TDDC  V
Sbjct:  431 DVQIDCTES-TDPSNTGNPVVEGNC------PPFDVTYEDTQTPGSCPQEYTITRLWIVVDASGM-SDSCEQIISVSDETPPVITCPADLVFECDAVGDFGSATATDDCGQV 534          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: UPI00142F4887 (hypothetical protein n=1 Tax=Tenacibaculum mesophilum TaxID=104268 RepID=UPI00142F4887)

HSP 1 Score: 58.5 bits (140), Expect = 1.950e-7
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   43 TAAPALDVELDCFMADTSATTNGEP-TFDDVCNGAIRSAP--FDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTA-PADFVGNCNSVASIGTPTGTDDCSSV 378
            T   +LD  + C   D++A    +  T +  C+  I   P  F+  +T CP        W   D+CG     FTQTIT TD T P+++A PAD   +C ++ S+ T T TD+C SV
Sbjct:  530 TTVDSLDRTVSC--EDSAALATAQLLTPEASCDLTITKIPGSFEASTTNCPVIGTYTNIWTFTDSCGRTSGQFTQTITVTDTTAPVLSATPADVSVDCEAIPSVPTITATDNCDSV 643          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: UPI00064AF2E3 (hypothetical protein n=1 Tax=Tenacibaculum mesophilum TaxID=104268 RepID=UPI00064AF2E3)

HSP 1 Score: 58.5 bits (140), Expect = 2.000e-7
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   43 TAAPALDVELDCFMADTSATTNGEP-TFDDVCNGAIRSAP--FDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTA-PADFVGNCNSVASIGTPTGTDDCSSV 378
            T   +LD  + C   D++A    +  T +  C+  I   P  F+  +T CP        W   D+CG     FTQTIT TD T P+++A PAD   +C ++ S+ T T TD+C SV
Sbjct:  530 TTVDSLDRTVSC--EDSTALATAQLLTPEASCDLTITKIPGSFEASTTNCPVIGTYTNIWTFTDSCGRTSGQFTQTITVTDTTAPVLSATPADVSVDCEAIPSVPTITATDNCDSV 643          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: UPI001422ABEA (hypothetical protein n=1 Tax=Paraflavitalea devenefica TaxID=2716334 RepID=UPI001422ABEA)

HSP 1 Score: 57.8 bits (138), Expect = 3.740e-7
Identity = 46/126 (36.51%), Postives = 60/126 (47.62%), Query Frame = 1
Query:    1 TQQIFITDMEGPVLTAAPALDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTA-PADFVGNCNSVASIGTPTGTDDCSS 375
            TQ + + D   PVL + PA DV + C     +AT     T  D C+  +    F   ST   G   I RTW +         + TQT+T TDNTPP++T  PAD    C SV    T T +D+C S
Sbjct: 2466 TQTLTVQDNIPPVLISVPA-DVTVQCGNVPAAATV----TATDNCDPTV-PVTFAETSTVVDGCGTITRTW-ATTXXXXXXXTATQTLTVTDNTPPVLTGVPADATVQCGSVPVAATVTASDNCDS 2584          
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Match: A0A1M5FSU8_9FLAO (Gliding motility-associated C-terminal domain-containing protein n=2 Tax=Tenacibaculum TaxID=104267 RepID=A0A1M5FSU8_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 6.900e-7
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   43 TAAPALDVELDCFMADTSATTNGEP-TFDDVCNGAIRSAP--FDNPSTPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTA-PADFVGNCNSVASIGTPTGTDDCSSV 378
            T   +LD  + C   D++A    +  T +  C+  I   P  F+  +T CP        W   D+CG     FTQTIT TD + P+++A PAD   +C ++ S+ T T TD+C SV
Sbjct:  530 TTVDSLDRTVSC--EDSAALATAQLLTPEASCDLTITKIPGSFEASTTNCPVIGTYTNIWTFTDSCGRTSGQFTQTITVTDTSAPVLSATPADVSVDCEAIPSVPTITATDNCDSV 643          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122135.4554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A506PFD6_9FLAO8.170e-1135.61HYR domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7Y3FRW3_9FLAO1.120e-1039.23T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00115DE7FC1.020e-935.88gliding motility-associated C-terminal domain-cont... [more]
A0A2V2S6A0_9BACT2.620e-932.81Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
V6SHP1_9FLAO8.810e-932.81Uncharacterized protein n=1 Tax=Flavobacterium lim... [more]
A0A7V1ZTR8_9BACT5.660e-836.61HYR domain-containing protein n=1 Tax=candidate di... [more]
UPI00142F48871.950e-735.34hypothetical protein n=1 Tax=Tenacibaculum mesophi... [more]
UPI00064AF2E32.000e-735.34hypothetical protein n=1 Tax=Tenacibaculum mesophi... [more]
UPI001422ABEA3.740e-736.51hypothetical protein n=1 Tax=Paraflavitalea devene... [more]
A0A1M5FSU8_9FLAO6.900e-734.48Gliding motility-associated C-terminal domain-cont... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122135contigM-pyrifera_M_contig122135:8..385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog1122176.KB903565_gene3379
Preferred namerapB2
KEGG koko:K07004,ko:K12548
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S8 family
EggNOG OGs1IXV1@117747,4PKD0@976,COG2304@1,COG2304@2
COG Functional cat.O
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size378
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.1081347-CDS-M-pyrifera_M_contig122135:7..3611622815741.1081347-CDS-M-pyrifera_M_contig122135:7..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122135 8..361 -
1692277547.590082-CDS-M-pyrifera_M_contig122135:7..3611692277547.590082-CDS-M-pyrifera_M_contig122135:7..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122135 8..361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.120619-UTR-M-pyrifera_M_contig122135:361..3851622815741.120619-UTR-M-pyrifera_M_contig122135:361..385Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122135 362..385 -
1692277547.6060505-UTR-M-pyrifera_M_contig122135:361..3851692277547.6060505-UTR-M-pyrifera_M_contig122135:361..385Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122135 362..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122135.4554.1prot_M-pyrifera_M_contig122135.4554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122135 8..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122135.4554.1

>prot_M-pyrifera_M_contig122135.4554.1 ID=prot_M-pyrifera_M_contig122135.4554.1|Name=mRNA_M-pyrifera_M_contig122135.4554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MEGPVLTAAPALDVELDCFMADTSATTNGEPTFDDVCNGAIRSAPFDNPS
TPCPGTTIIVRTWDSADNCGNDGESFTQTITTTDNTPPMVTAPADFVGNC
NSVASIGTPTGTDDCSSV
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mRNA from alignment at M-pyrifera_M_contig122135:8..385-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122135.4554.1 ID=mRNA_M-pyrifera_M_contig122135.4554.1|Name=mRNA_M-pyrifera_M_contig122135.4554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig122135:8..385- (Macrocystis pyrifera P11B4 male)
ACCCAGCAGATATTCATTACCGATATGGAGGGGCCCGTATTGACCGCCGC TCCTGCACTCGACGTCGAACTTGACTGTTTTATGGCAGACACCAGCGCCA CCACCAATGGCGAGCCAACTTTCGATGACGTTTGTAACGGAGCCATTAGA TCAGCCCCGTTTGACAATCCGAGCACCCCTTGCCCCGGCACCACTATTAT TGTTCGCACGTGGGATAGTGCTGACAATTGCGGCAATGACGGCGAATCTT TCACTCAAACGATTACTACCACCGATAACACACCACCTATGGTAACGGCG CCCGCCGATTTTGTCGGAAATTGCAACTCTGTTGCCAGTATTGGGACTCC GACCGGAACAGACGACTGCAGCTCTGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122135:8..385-

>mRNA_M-pyrifera_M_contig122135.4554.1 ID=mRNA_M-pyrifera_M_contig122135.4554.1|Name=mRNA_M-pyrifera_M_contig122135.4554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig122135:8..385- (Macrocystis pyrifera P11B4 male)
ATGGAGGGGCCCGTATTGACCGCCGCTCCTGCACTCGACGTCGAACTTGA
CTGTTTTATGGCAGACACCAGCGCCACCACCAATGGCGAGCCAACTTTCG
ATGACGTTTGTAACGGAGCCATTAGATCAGCCCCGTTTGACAATCCGAGC
ACCCCTTGCCCCGGCACCACTATTATTGTTCGCACGTGGGATAGTGCTGA
CAATTGCGGCAATGACGGCGAATCTTTCACTCAAACGATTACTACCACCG
ATAACACACCACCTATGGTAACGGCGCCCGCCGATTTTGTCGGAAATTGC
AACTCTGTTGCCAGTATTGGGACTCCGACCGGAACAGACGACTGCAGCTC
TGTAATGGAGGGGCCCGTATTGACCGCCGCTCCTGCACTCGACGTCGAAC
TTGACTGTTTTATGGCAGACACCAGCGCCACCACCAATGGCGAGCCAACT
TTCGATGACGTTTGTAACGGAGCCATTAGATCAGCCCCGTTTGACAATCC
GAGCACCCCTTGCCCCGGCACCACTATTATTGTTCGCACGTGGGATAGTG
CTGACAATTGCGGCAATGACGGCGAATCTTTCACTCAAACGATTACTACC
ACCGATAACACACCACCTATGGTAACGGCGCCCGCCGATTTTGTCGGAAA
TTGCAACTCTGTTGCCAGTATTGGGACTCCGACCGGAACAGACGACTGCA
GCTCTGTA
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