mRNA_M-pyrifera_M_contig121972.4516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121972.4516.1
Unique NamemRNA_M-pyrifera_M_contig121972.4516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A6U1XB29_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1XB29_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 3.080e-25
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    4 GFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGG-YNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDI 288
            GFDLSY+QG VS S F CL  +GY FGII+AT G+    NPY++S +S   +  I  +DVY+FPDT   ASS M + I +L  DG LTNNM+WMDI
Sbjct:   22 GFDLSYYQGDVSSSDFSCLKSNGYDFGIIEATKGSQATLNPYISSVVSNARKH-IKNIDVYIFPDTSHSASSLMNSFIKDLKKDGVLTNNMIWMDI 116          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: D2VXK4_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VXK4_NAEGR)

HSP 1 Score: 97.8 bits (242), Expect = 2.160e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 LGFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDI 288
            LG DLSYFQG VSQSS++CL  SG  F IIQA   TG  NPYVA+DI+R   AGI  +D+Y+FP+ ++DA++ +   +N +  +GA T   +W+DI
Sbjct:   26 LGLDLSYFQGDVSQSSWNCLKQSGREFAIIQAQLSTGRVNPYVANDINRAKAAGIKYVDIYIFPNINEDAAAQVQNTVNFIKSNGA-TFGQIWLDI 120          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A146K4U1_9EUKA (Glycosyl hydrolase family 25 protein (Fragment) n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146K4U1_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 5.180e-20
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 GFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDI 288
            GFDLS FQG V QSSF+CLA +G  F I QA  G    NPY  +D  R   AGI  +D Y+FP   + A S +   +N L  +G LTNNM+W+DI
Sbjct:   10 GFDLSVFQGDVQQSSFNCLAQNGMKFAIFQAQRGPK-LNPYAINDYKRAKIAGIQYVDFYMFPTVQKSAISQVKETVNYLKSNGVLTNNMIWVDI 103          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A146KB08_9EUKA (Glycosyl hydrolase family 25 protein (Fragment) n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146KB08_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 4.430e-19
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    4 GFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDIGSRSL 303
            GFDLSY+QG VSQ+S  CL  +G +F I QA  G    +PY  +D  R   AGI  +D YVFP   +D        IN+L   G L NNM+W+DI S  L
Sbjct:    6 GFDLSYYQGDVSQTSMSCLKQNGMNFAIFQAQIGKT-ISPYAINDYKRAKAAGIANVDFYVFPTISKDPRQQARDTINHLKAGGVLQNNMIWLDIESHDL 104          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A146K1V3_9EUKA (Glycosyl hydrolase family 25 protein n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146K1V3_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 5.960e-19
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    4 GFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDIGSRSL 303
            GFDLSY+QG VSQ++ +CL +SG  F I QA  G    +PY A+D +R   AGI  +D Y+FP   +D        IN+L   G L  NMVW+DI +  L
Sbjct:   11 GFDLSYYQGDVSQNTMNCLKNSGMKFAIFQAQIGKT-ISPYAANDYNRAKAAGIANVDFYIFPTISKDPRQQARDTINHLKSKGVLKGNMVWLDIENHGL 109          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: UPI001CFD7B67 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD7B67)

HSP 1 Score: 84.0 bits (206), Expect = 5.800e-18
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 LGFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDI 288
            LG DLSYFQG V QSS++CL  +G  F IIQA   +G  NPY+ +DI+R   AGI  +D+Y+FP+ + D +  +   ++ +  +G  T   +W+D+
Sbjct:   31 LGLDLSYFQGDVPQSSWNCLKQNGREFAIIQAQTQSGHVNPYIVNDINRAKAAGIKYVDIYIFPNVNMDPAEQVRNTVSFIKQNGG-TFGQIWIDV 125          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A6A5BRH2_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BRH2_NAEFO)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-17
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 LGFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDI 288
            LG DLSYFQG V QSS++CL  +G  F IIQA   +G  NPY+ +DI+R   AGI  +D+Y+FP+ + D +  +   +N +  +G  +   +W+D+
Sbjct:   16 LGLDLSYFQGDVPQSSWNCLKQNGREFAIIQAQTQSGHVNPYIVNDINRAKAAGIQYVDIYIFPNVNMDPAEQVRNTVNFVKQNGG-SFGQIWIDV 110          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A146KHB9_9EUKA (Lysozyme family protein (Fragment) n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146KHB9_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 7.440e-14
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    4 GFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEA---GICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDIGSRSL 303
            G+D+SY++G  SQSSFDCL  +G  F I++A  G+     +V + I + H A   GI  +D Y+FP   +D    +   I  L   G L NNMVW+DI + +L
Sbjct:   26 GYDISYYEGLPSQSSFDCLYKNGMRFAIMEAQMGS----TWVQNSIEQYHRAIKSGIKNVDFYIFPTKQKDPKQQVQDTIKKLQKAGVLNNNMVWLDIENHNL 124          
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Match: A0A146K5G2_9EUKA (Glycosyl hydrolase family 25 protein n=1 Tax=Trepomonas sp. PC1 TaxID=1076344 RepID=A0A146K5G2_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 2.360e-12
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    1 LGFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRGHEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDIGSR 297
            +G+DLSYF+G V QSSFDCL  +G  F + +        N + A+D  R   AG   +D Y +P   QD    +   IN L ++ A+   M W+DI  R
Sbjct:    1 MGYDLSYFEGDVQQSSFDCLRKNGMEFAVFEVYVHNF-LNQFAANDYKRAKAAGFKRIDFYHYPSNKQDPRQQVRDSINYLKENDAMDFGMFWIDIEER 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121972.4516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6U1XB29_9EUKA3.080e-2555.21Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
D2VXK4_NAEGR2.160e-2351.04Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A146K4U1_9EUKA5.180e-2049.47Glycosyl hydrolase family 25 protein (Fragment) n=... [more]
A0A146KB08_9EUKA4.430e-1946.00Glycosyl hydrolase family 25 protein (Fragment) n=... [more]
A0A146K1V3_9EUKA5.960e-1945.00Glycosyl hydrolase family 25 protein n=1 Tax=Trepo... [more]
UPI001CFD7B675.800e-1841.67uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BRH2_NAEFO1.110e-1741.67Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A146KHB9_9EUKA7.440e-1439.81Lysozyme family protein (Fragment) n=1 Tax=Trepomo... [more]
A0A146K5G2_9EUKA2.360e-1237.37Glycosyl hydrolase family 25 protein n=1 Tax=Trepo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121972contigM-pyrifera_M_contig121972:176..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog5762.XP_002671268.1
Hectar predicted targeting categoryother localisation
GOsGO:0000270,GO:0003674,GO:0003796,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009253,GO:0009605,GO:0009607,GO:0009617,GO:0016787,GO:0016798,GO:0030203,GO:0031410,GO:0031982,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0050830,GO:0050896,GO:0051704,GO:0051707,GO:0061783,GO:0071704,GO:0097708,GO:0098542,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.peptidoglycan catabolic process
EggNOG OGs2D8YH@1,2S1SN@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.8876948-CDS-M-pyrifera_M_contig121972:175..4781622815738.8876948-CDS-M-pyrifera_M_contig121972:175..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121972 176..478 +
1692277546.3995433-CDS-M-pyrifera_M_contig121972:175..4781692277546.3995433-CDS-M-pyrifera_M_contig121972:175..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121972 176..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121972.4516.1prot_M-pyrifera_M_contig121972.4516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121972 176..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121972.4516.1

>prot_M-pyrifera_M_contig121972.4516.1 ID=prot_M-pyrifera_M_contig121972.4516.1|Name=mRNA_M-pyrifera_M_contig121972.4516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
LGFDLSYFQGQVSQSSFDCLADSGYSFGIIQATAGTGGYNPYVASDISRG
HEAGICCLDVYVFPDTDQDASSSMTTLINNLLDDGALTNNMVWMDIGSRS
L
back to top

mRNA from alignment at M-pyrifera_M_contig121972:176..478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121972.4516.1 ID=mRNA_M-pyrifera_M_contig121972.4516.1|Name=mRNA_M-pyrifera_M_contig121972.4516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig121972:176..478+ (Macrocystis pyrifera P11B4 male)
CTCGGGTTCGACCTGAGCTACTTCCAGGGCCAGGTGTCGCAGTCCTCCTT CGACTGCCTGGCGGACAGCGGCTACTCGTTCGGCATCATCCAGGCCACGG CCGGCACGGGCGGCTACAACCCCTACGTCGCCTCTGACATCTCGCGCGGC CACGAGGCCGGCATCTGCTGCCTCGACGTCTACGTCTTCCCCGACACCGA CCAGGACGCCTCCTCCTCCATGACCACCCTCATCAACAACCTCCTCGACG ACGGCGCCCTTACCAACAACATGGTCTGGATGGACATCGGTTCGCGCTCT CTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121972:176..478+

>mRNA_M-pyrifera_M_contig121972.4516.1 ID=mRNA_M-pyrifera_M_contig121972.4516.1|Name=mRNA_M-pyrifera_M_contig121972.4516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig121972:176..478+ (Macrocystis pyrifera P11B4 male)
CTCGGGTTCGACCTGAGCTACTTCCAGGGCCAGGTGTCGCAGTCCTCCTT
CGACTGCCTGGCGGACAGCGGCTACTCGTTCGGCATCATCCAGGCCACGG
CCGGCACGGGCGGCTACAACCCCTACGTCGCCTCTGACATCTCGCGCGGC
CACGAGGCCGGCATCTGCTGCCTCGACGTCTACGTCTTCCCCGACACCGA
CCAGGACGCCTCCTCCTCCATGACCACCCTCATCAACAACCTCCTCGACG
ACGGCGCCCTTACCAACAACATGGTCTGGATGGACATCGGTTCGCGCTCT
CTCCTCGGGTTCGACCTGAGCTACTTCCAGGGCCAGGTGTCGCAGTCCTC
CTTCGACTGCCTGGCGGACAGCGGCTACTCGTTCGGCATCATCCAGGCCA
CGGCCGGCACGGGCGGCTACAACCCCTACGTCGCCTCTGACATCTCGCGC
GGCCACGAGGCCGGCATCTGCTGCCTCGACGTCTACGTCTTCCCCGACAC
CGACCAGGACGCCTCCTCCTCCATGACCACCCTCATCAACAACCTCCTCG
ACGACGGCGCCCTTACCAACAACATGGTCTGGATGGACATCGGTTCGCGC
TCTCTC
back to top