mRNA_M-pyrifera_M_contig121829.4489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121829.4489.1
Unique NamemRNA_M-pyrifera_M_contig121829.4489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A2E7KLP1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLP1_9PLAN)

HSP 1 Score: 231 bits (589), Expect = 3.800e-71
Identity = 163/176 (92.61%), Postives = 163/176 (92.61%), Query Frame = 1
Query:    1 GSRNRSGSSASNRSRSSVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGYRPGGIQSGFGSQHRHSNPGXXXXXHHHAGRGGTXXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            GSRNRSGSSASNRSRSSVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGY  GGIQSGFGSQHRHSNP XXXXX         XXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGL SWCGYNNLTPV
Sbjct:   10 GSRNRSGSSASNRSRSSVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGYSRGGIQSGFGSQHRHSNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLVSWCGYNNLTPV 185          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A6I6AI29_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AI29_9PLAN)

HSP 1 Score: 222 bits (565), Expect = 5.220e-66
Identity = 162/178 (91.01%), Postives = 162/178 (91.01%), Query Frame = 1
Query:    1 GSRNRSGSSASNRSRS--SVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGYRPGGIQSGFGSQHRHSNPGXXXXXHHHAGRGGTXXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            GSR RSGSS  NRSRS  SVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGY  GGIQSGFGSQHRHSNP XXXXX   AGR   XXXXXXXXXXXXXXXXYASRSY YNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGL SWCGYNNLTPV
Sbjct:  177 GSRIRSGSSDFNRSRSRSSVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGYSRGGIQSGFGSQHRHSNPXXXXXXXXXAGRXXXXXXXXXXXXXXXXXXXYASRSYRYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLVSWCGYNNLTPV 354          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A518A9Z5_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A9Z5_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 2.700e-23
Identity = 95/158 (60.13%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   55 QDFGSRRGSNISGLSSGGSRHGRTDQYYRGATGYRPGGIQSGFGSQHRHSNPGXXXXXHHHAGRGGTXXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            Q+FGSR+GS I+G  SGGS+HG T Q++R                  +H NP XXXX  HHAG    XXXXXXXXXXX     YA RSYHYNPGYWS XXXXXXXXXXXXXXXXX  Y R     PYYHY       W+WATYGGLASW GYN+LTPV
Sbjct:  196 QNFGSRQGSGITGFRSGGSQHGITSQHFRXXXXXXXXXXXXXXXXXXQHRNPXXXXXGQHHAGXXXXXXXXXXXXXXXNNYQRYAGRSYHYNPGYWSXXXXXXXXXXXXXXXXXXGYYGRXXXXXPYYHYXXXXXXXWVWATYGGLASWIGYNSLTPV 353          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A517RJA4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RJA4_9PLAN)

HSP 1 Score: 87.0 bits (214), Expect = 7.300e-17
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  307 ASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            A+RSY+Y PGYW+G                 SRYR GYGYYPYYHYRR   RPW+W T+GGL++W GYN+L PV
Sbjct:   91 ANRSYYYRPGYWTGYRPWYGLGLSYGYG---SRYR-GYGYYPYYHYRRXXXRPWVWTTFGGLSAWIGYNSLAPV 160          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A517XF32_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XF32_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 2.060e-15
Identity = 62/158 (39.24%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   88 SGLSSGGSRHGRTDQYYRGATGYRPGGIQSGFGSQH-RHSNPGXXXXXHHHAGRGGTXXXXXXXXXXXXXXXXYASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGY----------YPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            SG SS  +  G  D++  G+ G RPGG + G    H  H    XXXXXH ++G                    + +  YHY PGYWSG                 SRY  G G           YPYYHYRRYGYRPW+W+T+GGL++W GYN+L PV
Sbjct:  109 SGFSSSRNHQGSGDRH-SGSPGLRPGGGRHGNRDHHVSHXXXXXXXXXHRNSGN----------------HARHGNNRYHYRPGYWSGYR---------------SRYALGNGXXXXXXXXXXXYPYYHYRRYGYRPWVWSTFGGLSAWIGYNSLNPV 234          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A518IG40_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IG40_9PLAN)

HSP 1 Score: 69.7 bits (169), Expect = 6.880e-11
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  304 YASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            Y ++ Y Y PGYW G                   +R GY Y PY HY RYGYRPW WAT+GG+A+W GY+  TPV
Sbjct:   25 YGNKPY-YPPGYWHG-------------------HRPGYRYNPYQHYHRYGYRPWAWATFGGVAAWIGYSAATPV 79          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A518IG42_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IG42_9PLAN)

HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10
Identity = 37/89 (41.57%), Postives = 43/89 (48.31%), Query Frame = 1
Query:  310 SRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYY----------------HYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            +R YHY PGYW+G                  R R GYG+  +Y                  RRY YRPW+WAT+GGL SW GYNNL PV
Sbjct:   72 NRPYHYRPGYWTGY-----------------RPRYGYGFSSFYGPRYGRXXXXXXXXXXXXRRYAYRPWVWATFGGLTSWIGYNNLNPV 143          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A6CAT8_9PLAN (Probable mu-protocadherin-putative cell-suface protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CAT8_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 2.580e-8
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 1
Query:  439 HYRRYGYRPWIWATYGGLASWCGYNNLTPV 528
            HYRRYGYRPW+W+T+GGL++W GYN+L PV
Sbjct:   18 HYRRYGYRPWVWSTFGGLSAWIGYNSLNPV 47          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: UPI0011A53B2E (hypothetical protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=UPI0011A53B2E)

HSP 1 Score: 53.1 bits (126), Expect = 4.380e-5
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  304 YASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLT 522
            Y +R Y Y PGYW G XXXXXXXXXX                   HY RYGYRPW WAT+GG+A+W GY+ +T
Sbjct:   38 YGNRPY-YPPGYWHGYXXXXXXXXXX-------------------HYYRYGYRPWAWATFGGVAAWIGYSAVT 90          
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Match: A0A517WY40_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WY40_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.120e-5
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  304 YASRSYHYNPGYWSGXXXXXXXXXXXXXXXXXSRYRRGYGYYPYYHYRRYGYRPWIWATYGGLASWCGYNNLT 522
            Y +R Y Y PGYW G XXXXXXXXXX                   HY RYGYRPW WAT+GG+A+W GY+ +T
Sbjct:  249 YGNRPY-YPPGYWHGYXXXXXXXXXX-------------------HYYRYGYRPWAWATFGGVAAWIGYSAVT 301          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121829.4489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2E7KLP1_9PLAN3.800e-7192.61Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A6I6AI29_9PLAN5.220e-6691.01Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A9Z5_9PLAN2.700e-2360.13Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
A0A517RJA4_9PLAN7.300e-1755.41Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
A0A517XF32_9PLAN2.060e-1539.24Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A518IG40_9PLAN6.880e-1146.67Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518IG42_9PLAN4.170e-1041.57Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A6CAT8_9PLAN2.580e-873.33Probable mu-protocadherin-putative cell-suface pro... [more]
UPI0011A53B2E4.380e-552.05hypothetical protein n=1 Tax=Gimesia aquarii TaxID... [more]
A0A517WY40_9PLAN5.120e-552.05Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121829contigM-pyrifera_M_contig121829:3..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog344747.PM8797T_23911
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,COG5183@2
COG Functional cat.A
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.6939821-CDS-M-pyrifera_M_contig121829:2..5301622815737.6939821-CDS-M-pyrifera_M_contig121829:2..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121829 3..530 +
1692277545.8968596-CDS-M-pyrifera_M_contig121829:2..5301692277545.8968596-CDS-M-pyrifera_M_contig121829:2..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121829 3..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121829.4489.1prot_M-pyrifera_M_contig121829.4489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121829 3..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121829.4489.1

>prot_M-pyrifera_M_contig121829.4489.1 ID=prot_M-pyrifera_M_contig121829.4489.1|Name=mRNA_M-pyrifera_M_contig121829.4489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
GSRNRSGSSASNRSRSSVQDFGSRRGSNISGLSSGGSRHGRTDQYYRGAT
GYRPGGIQSGFGSQHRHSNPGLSSGGHHHAGRGGTGLRSGRNYNRGRGHT
GYASRSYHYNPGYWSGYRTGYGFGIGYGYGSGYSRYRRGYGYYPYYHYRR
YGYRPWIWATYGGLASWCGYNNLTPV
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mRNA from alignment at M-pyrifera_M_contig121829:3..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121829.4489.1 ID=mRNA_M-pyrifera_M_contig121829.4489.1|Name=mRNA_M-pyrifera_M_contig121829.4489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig121829:3..530+ (Macrocystis pyrifera P11B4 male)
GGCAGTCGTAACCGATCCGGTTCTTCCGCTTCCAACCGTTCCCGCTCGTC AGTTCAGGATTTCGGATCCCGCCGGGGAAGCAACATCAGCGGATTAAGCT CGGGGGGAAGTCGTCACGGCAGAACCGATCAATATTACCGGGGAGCCACC GGTTATCGTCCCGGGGGAATTCAGTCTGGCTTTGGCAGTCAGCATCGACA CAGTAATCCTGGTTTAAGCTCCGGAGGACATCATCATGCTGGACGTGGCG GTACCGGATTAAGATCAGGCCGAAACTACAATCGTGGCCGAGGTCATACC GGCTATGCCAGCAGATCCTATCATTATAATCCCGGTTACTGGTCCGGTTA CCGGACAGGCTACGGATTCGGAATCGGCTATGGATACGGTTCCGGCTATA GTCGTTATCGCCGCGGTTACGGATACTATCCTTACTACCATTATCGCAGA TACGGTTACCGTCCCTGGATCTGGGCTACTTACGGTGGTCTGGCTTCCTG GTGCGGTTACAATAATCTGACACCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121829:3..530+

>mRNA_M-pyrifera_M_contig121829.4489.1 ID=mRNA_M-pyrifera_M_contig121829.4489.1|Name=mRNA_M-pyrifera_M_contig121829.4489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig121829:3..530+ (Macrocystis pyrifera P11B4 male)
GGCAGTCGTAACCGATCCGGTTCTTCCGCTTCCAACCGTTCCCGCTCGTC
AGTTCAGGATTTCGGATCCCGCCGGGGAAGCAACATCAGCGGATTAAGCT
CGGGGGGAAGTCGTCACGGCAGAACCGATCAATATTACCGGGGAGCCACC
GGTTATCGTCCCGGGGGAATTCAGTCTGGCTTTGGCAGTCAGCATCGACA
CAGTAATCCTGGTTTAAGCTCCGGAGGACATCATCATGCTGGACGTGGCG
GTACCGGATTAAGATCAGGCCGAAACTACAATCGTGGCCGAGGTCATACC
GGCTATGCCAGCAGATCCTATCATTATAATCCCGGTTACTGGTCCGGTTA
CCGGACAGGCTACGGATTCGGAATCGGCTATGGATACGGTTCCGGCTATA
GTCGTTATCGCCGCGGTTACGGATACTATCCTTACTACCATTATCGCAGA
TACGGTTACCGTCCCTGGATCTGGGCTACTTACGGTGGTCTGGCTTCCTG
GTGCGGTTACAATAATCTGACACCCGTCGGCAGTCGTAACCGATCCGGTT
CTTCCGCTTCCAACCGTTCCCGCTCGTCAGTTCAGGATTTCGGATCCCGC
CGGGGAAGCAACATCAGCGGATTAAGCTCGGGGGGAAGTCGTCACGGCAG
AACCGATCAATATTACCGGGGAGCCACCGGTTATCGTCCCGGGGGAATTC
AGTCTGGCTTTGGCAGTCAGCATCGACACAGTAATCCTGGTTTAAGCTCC
GGAGGACATCATCATGCTGGACGTGGCGGTACCGGATTAAGATCAGGCCG
AAACTACAATCGTGGCCGAGGTCATACCGGCTATGCCAGCAGATCCTATC
ATTATAATCCCGGTTACTGGTCCGGTTACCGGACAGGCTACGGATTCGGA
ATCGGCTATGGATACGGTTCCGGCTATAGTCGTTATCGCCGCGGTTACGG
ATACTATCCTTACTACCATTATCGCAGATACGGTTACCGTCCCTGGATCT
GGGCTACTTACGGTGGTCTGGCTTCCTGGTGCGGTTACAATAATCTGACA
CCCGTC
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