mRNA_M-pyrifera_M_contig121751.4469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121751.4469.1
Unique NamemRNA_M-pyrifera_M_contig121751.4469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: A0A7S4HH96_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HH96_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 8.130e-24
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   16 IKRLQDTIYPRIDAFIRDTKSVISAELNADIT--NYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKH--RLDIVPVTGLVVSVLLRLENEHKTVLDLW 354
            IKRLQ+ IYP ID+F++D K V+S +   D+T  +++L QV++     K  +D Q+ +W+ + I DI YL EM  L+DPEY+  +    L IVP++GL+V + +RLENE KTV +LW
Sbjct:  510 IKRLQNLIYPVIDSFVQDAKIVLSEQFKMDLTGKDFSLPQVEEAFQKEKDSIDPQIRDWIASMIKDIHYLNEMHKLEDPEYASNQADPSLHIVPISGLIVGIFVRLENECKTVCELW 626          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: L8HFW0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFW0_ACACA)

HSP 1 Score: 96.3 bits (238), Expect = 1.010e-20
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 QMDTHIKRLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWG 357
            Q+   IKRL+  IYP+ID FI + + V++ + N     + LE+ +      +  +  ++ +W+E+ + DI+YL +M+ L+ P+  K K  LDIVPVTGL+V    RLENE +TVLD+WG
Sbjct:  479 QVQRLIKRLKSEIYPQIDRFISNAEIVLAEQFNIPYETFALEEAELKFAAERETLGAEVRDWIEDMLKDILYLRQMKRLEKPQNRKEKI-LDIVPVTGLIVGRFYRLENELRTVLDVWG 596          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: F1A120_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A120_DICPU)

HSP 1 Score: 71.2 bits (173), Expect = 5.980e-12
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   16 IKRLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWG 357
            I++L+  IYP ID FI+ + +V    LN D  N     +KDL    K  M + +   +E+ + D+ YLEEM+ L+    +   H   IVP++GLV+    R+ENE KT+++L+ 
Sbjct:  675 IEQLKSEIYPIIDDFIKRSHAVFCDILNVDNLNDN-NSIKDLLNERKPSMKSNLFSQLEDLLSDLEYLEEMKRLEANPEATSFH---IVPISGLVIGFFARIENELKTIIELYS 784          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: UPI000645114D (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645114D)

HSP 1 Score: 70.1 bits (170), Expect = 1.540e-11
Identity = 42/118 (35.59%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   16 IKRLQDTIYPRIDAFIRDTKSVISAELNADITNYTL----EQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWG 357
            IK L+  I P I+ FI+ +  V+S  L   ++N T+    E++KD     + ++D Q+   +++ + D+ YL EM  L+D   S+    L IVP++GLV++   R+ENE KTV++LW 
Sbjct:  703 IKELRQEIQPVINTFIKKSHIVLSEMLGLPLSNVTVQVASERLKDRRQ--QQQIDEQLASSIDDLLSDLEYLREMIHLEDATTSERS--LHIVPISGLVMNTFARIENELKTVVELWN 816          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: D3BT49_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BT49_POLPP)

HSP 1 Score: 69.3 bits (168), Expect = 2.820e-11
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    7 DTHIK--------RLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQV-----------KDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWGHLE 366
            DTHI+        +L  +IYP I+ F+   K VI    +A + N ++ Q+           K+L    K   D      +E    DI Y+ EM+ L   E +  + RLDIVP++G+    L RLENE +TVLD+W HL+
Sbjct:  600 DTHIRIQFKKLVEKLNHSIYPVIELFVLKCKLVILDSFDA-LENTSIAQMETSGHLEMSYLKELFNRRKDVTDKHRCNQIERLYKDIEYILEMKRL---ELNPSEKRLDIVPISGIAFGRLHRLENEMRTVLDIWKHLD 734          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: A0A7S4IX01_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IX01_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 3.790e-11
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 KRLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEM-RLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLW 354
            K L D +Y  I+ FIRD    +  EL    +       + +    K +   Q+ + + + + D  YLE+M R+ +D E+SK + R+  +PV+GLV+S   RLENEHK+VLDLW
Sbjct:  109 KSLCDKVYRIINDFIRDINFCVMLELKLPNSFIPTSNAQLIEMINKEKFPQQLKQQLIDVVKDKEYLEDMKRMENDKEFSKSR-RMVTIPVSGLVMSKFCRLENEHKSVLDLW 220          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: Q54WV3_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54WV3_DICDI)

HSP 1 Score: 66.2 bits (160), Expect = 3.430e-10
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   22 RLQDTIYPRIDAFIRDTKSVISAELN----ADITNYT------LEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWGHLE 366
            +L +TIYP ID F+  +  VI    +    A IT         LE VK+L    K  ++      +E  + DI Y  EM+ L++    K   RLDIV +TGLV   + RLENE +TV+D W HL+
Sbjct:  902 KLAETIYPMIDDFVLKSYLVILDSFDMFTTAKITELEEKGCLQLEFVKNLVLKKKDTLEKSKASQLEKLLKDIHYCIEMKQLENVPQEK---RLDIVTITGLVFGRVHRLENEMRTVVDNWKHLD 1023          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: UPI000644C48C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C48C)

HSP 1 Score: 65.5 bits (158), Expect = 6.300e-10
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   10 THIKRLQDTIYPRIDAFIRDTKSVIS----------AELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWGHLE 366
            T +++L   +YP+I+ F+   K V+           AEL A+     +++++ L    K  ++ Q    ++    DI YL +MR L+D   S  + RLDIV ++G+    L RLENE +TV++LW HLE
Sbjct:  684 TVVEKLVRDVYPKIELFVVKCKLVVLDCIGAFDVSLAELEAN-GMLDMDRLRQLYLMHKQNLERQKCSHIDRIFKDIEYLLDMRRLEDTT-SPTEKRLDIVTISGITFGRLHRLENEMRTVVELWKHLE 810          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: A0A8J4PP40_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PP40_9MYCE)

HSP 1 Score: 64.7 bits (156), Expect = 1.180e-9
Identity = 44/123 (35.77%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   25 LQDTIYPRIDAFIRDTKSVI---------SAELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWGHLE 366
            L +TIYP I+ FI  +K VI          A +  +     LE +K L    K  ++      +E  I DI Y  EM+ L+   + K     D+V +TGLV S + RLENE +TVL+ W HL+
Sbjct:  783 LTETIYPAIEDFILKSKLVILDQFDLFNQKASVLEEKGELDLENLKQLFQKKKETLEKSKSLQIEKIIKDIEYCIEMKRLEHHYHEKT---FDVVTITGLVFSRIHRLENEMRTVLENWKHLD 902          
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Match: A0A7S4KTD7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KTD7_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-9
Identity = 35/126 (27.78%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 QMDTHIKRLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQVKDLAGTLKGEMDTQMGEWVENTIMDIVYLEEMRLL----DDPEYSKGKHRLDIVPVTGLVVSVLLRLENEHKTVLDLWGHLE 366
            Q+   I  L   +Y R+D ++ + +++++ +  A+     L  +K     ++   +  +   +   I DI YLE M+ +    DDP     +    +VP +GL++S  LR E E +T L++WGHLE
Sbjct:  168 QLRNFISSLSAELYTRVDEYVEEGRALLAHQFGAEKEGLDLGSIKLELLAMESTFEPSVYRALCGMIEDIRYLETMKEMEKDVDDPLKKTSRIGAGVVPFSGLILSSFLRKEQEFRTALEVWGHLE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121751.4469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S4HH96_9EUKA8.130e-2445.30Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8HFW0_ACACA1.010e-2040.34Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
F1A120_DICPU5.980e-1235.96Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
UPI000645114D1.540e-1135.59hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BT49_POLPP2.820e-1134.53Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A7S4IX01_9EUKA3.790e-1137.17Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
Q54WV3_DICDI3.430e-1037.60Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
UPI000644C48C6.300e-1033.33hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PP40_9MYCE1.180e-935.77Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A7S4KTD7_9EUKA1.490e-927.78Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121751contigM-pyrifera_M_contig121751:3..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog5786.XP_003293361.1
Preferred nameANKRD55
Hectar predicted targeting categoryother localisation
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGs3XBAQ@554915,COG0666@1,KOG4412@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size366
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121751.4469.1prot_M-pyrifera_M_contig121751.4469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121751 3..428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.6967978-CDS-M-pyrifera_M_contig121751:2..1941622815736.6967978-CDS-M-pyrifera_M_contig121751:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121751 3..194 -
1692277545.435028-CDS-M-pyrifera_M_contig121751:2..1941692277545.435028-CDS-M-pyrifera_M_contig121751:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121751 3..194 -
1622815736.7079659-CDS-M-pyrifera_M_contig121751:257..4281622815736.7079659-CDS-M-pyrifera_M_contig121751:257..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121751 258..428 -
1692277545.4450634-CDS-M-pyrifera_M_contig121751:257..4281692277545.4450634-CDS-M-pyrifera_M_contig121751:257..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121751 258..428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.7220623-UTR-M-pyrifera_M_contig121751:428..4311622815736.7220623-UTR-M-pyrifera_M_contig121751:428..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121751 429..431 -
1692277545.4531765-UTR-M-pyrifera_M_contig121751:428..4311692277545.4531765-UTR-M-pyrifera_M_contig121751:428..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121751 429..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121751.4469.1

>prot_M-pyrifera_M_contig121751.4469.1 ID=prot_M-pyrifera_M_contig121751.4469.1|Name=mRNA_M-pyrifera_M_contig121751.4469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MDTHIKRLQDTIYPRIDAFIRDTKSVISAELNADITNYTLEQVKDLAGTL
KGEMDTQMGEWVENTIMDIVYLEEMRLLDDPEYSKGKHRLDIVPVTGLVV
SVLLRLENEHKTVLDLWGHLE
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mRNA from alignment at M-pyrifera_M_contig121751:3..431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121751.4469.1 ID=mRNA_M-pyrifera_M_contig121751.4469.1|Name=mRNA_M-pyrifera_M_contig121751.4469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig121751:3..431- (Macrocystis pyrifera P11B4 male)
CAGATGGATACACACATCAAGCGACTGCAAGATACCATCTACCCTCGCAT TGACGCCTTCATTCGTGACACGAAGTCTGTCATCTCAGCCGAGCTCAACG CCGACATCACGAACTACACCCTGGAGCAGGTGAAGGACCTGGCAGGCACT CTCAAGGGGGAGATGGACACACAGGTAAGGACGGCCACGCAATGCCCACT CTGCTGGCTGCCACACCTTGCTGACGAGAGAGCTTAGATGGGCGAGTGGG TGGAGAACACAATCATGGATATTGTCTACCTGGAGGAGATGCGCCTCTTG GACGACCCGGAGTATTCCAAGGGAAAACACAGGCTGGACATCGTGCCAGT GACTGGCCTGGTGGTTTCGGTGCTCCTCCGCCTGGAGAATGAGCACAAGA CAGTCCTCGACCTCTGGGGCCACCTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121751:3..431-

>mRNA_M-pyrifera_M_contig121751.4469.1 ID=mRNA_M-pyrifera_M_contig121751.4469.1|Name=mRNA_M-pyrifera_M_contig121751.4469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig121751:3..431- (Macrocystis pyrifera P11B4 male)
ATGGATACACACATCAAGCGACTGCAAGATACCATCTACCCTCGCATTGA
CGCCTTCATTCGTGACACGAAGTCTGTCATCTCAGCCGAGCTCAACGCCG
ACATCACGAACTACACCCTGGAGCAGGTGAAGGACCTGGCAGGCACTCTC
AAGGGGGAGATGGACACACAGATGGATACACACATCAAGCGACTGCAAGA
TACCATCTACCCTCGCATTGACGCCTTCATTCGTGACACGAAGTCTGTCA
TCTCAGCCGAGCTCAACGCCGACATCACGAACTACACCCTGGAGCAGGTG
AAGGACCTGGCAGGCACTCTCAAGGGGGAGATGGACACACAGATGGGCGA
GTGGGTGGAGAACACAATCATGGATATTGTCTACCTGGAGGAGATGCGCC
TCTTGGACGACCCGGAGTATTCCAAGGGAAAACACAGGCTGGACATCGTG
CCAGTGACTGGCCTGGTGGTTTCGGTGCTCCTCCGCCTGGAGAATGAGCA
CAAGACAGTCCTCGACCTCTGGGGCCACCTGGAAATGGGCGAGTGGGTGG
AGAACACAATCATGGATATTGTCTACCTGGAGGAGATGCGCCTCTTGGAC
GACCCGGAGTATTCCAAGGGAAAACACAGGCTGGACATCGTGCCAGTGAC
TGGCCTGGTGGTTTCGGTGCTCCTCCGCCTGGAGAATGAGCACAAGACAG
TCCTCGACCTCTGGGGCCACCTGGAA
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